Wall clock time and date at job start Mon Mar 30 2020 07:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47207 * 2 1 4 4 H 1.09000 * 112.84871 * 43.79700 * 3 2 1 5 5 C 1.53782 * 113.61158 * 272.49159 * 3 2 1 6 6 C 1.53953 * 87.11215 * 220.08949 * 5 3 2 7 7 C 1.53775 * 113.61468 * 174.99864 * 3 2 1 8 8 H 1.09000 * 113.61580 * 25.34455 * 7 3 2 9 9 N 1.46908 * 113.61341 * 254.52887 * 7 3 2 10 10 C 1.46903 * 111.00006 * 156.53098 * 9 7 3 11 11 C 1.50697 * 109.47089 * 179.97438 * 10 9 7 12 12 C 1.38633 * 119.74949 * 269.72815 * 11 10 9 13 13 C 1.37619 * 120.24729 * 179.71954 * 12 11 10 14 14 C 1.40721 * 119.74248 * 0.57052 * 13 12 11 15 15 C 1.41402 * 120.24105 * 179.68297 * 14 13 12 16 16 H 1.07999 * 119.99551 * 204.40991 * 15 14 13 17 17 C 1.39940 * 120.00012 * 24.40252 * 15 14 13 18 18 N 1.30825 * 120.00049 * 17.85251 * 17 15 14 19 19 Si 1.86804 * 119.99952 * 197.84801 * 17 15 14 20 20 H 1.48499 * 109.46965 * 90.00080 * 19 17 15 21 21 H 1.48502 * 109.47012 * 210.00137 * 19 17 15 22 22 H 1.48498 * 109.46903 * 330.00249 * 19 17 15 23 23 C 1.40705 * 119.51384 * 359.70257 * 14 13 12 24 24 C 1.37618 * 119.74473 * 359.97438 * 23 14 13 25 25 H 1.08996 * 109.47058 * 300.00362 * 1 2 3 26 26 H 1.09001 * 109.46494 * 60.00292 * 1 2 3 27 27 H 1.09000 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47677 * 239.99204 * 2 1 3 29 29 H 1.09008 * 109.46617 * 119.99327 * 2 1 3 30 30 H 1.08997 * 113.61383 * 334.57285 * 5 3 2 31 31 H 1.08998 * 113.61115 * 105.38436 * 5 3 2 32 32 H 1.08998 * 113.61386 * 270.84266 * 6 5 3 33 33 H 1.08998 * 113.66228 * 139.88918 * 6 5 3 34 34 H 1.00898 * 110.99538 * 280.47985 * 9 7 3 35 35 H 1.08994 * 109.47145 * 59.99604 * 10 9 7 36 36 H 1.08996 * 109.46720 * 299.99684 * 10 9 7 37 37 H 1.07997 * 119.87819 * 359.97438 * 12 11 10 38 38 H 1.07997 * 120.12883 * 180.27640 * 13 12 11 39 39 H 0.97006 * 119.99615 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.13141 * 180.02562 * 23 14 13 41 41 H 1.08005 * 119.87795 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.4976 2.0832 0.6952 5 6 2.1876 2.0436 -1.4077 6 6 3.4915 2.6929 -0.9091 7 6 3.5687 1.5554 0.1228 8 1 4.1019 0.6752 -0.2366 9 7 4.0217 1.9942 1.4497 10 6 5.4046 1.5675 1.7016 11 6 5.8335 2.0351 3.0685 12 6 6.4387 3.2739 3.2131 13 6 6.8292 3.7137 4.4574 14 6 6.6229 2.8954 5.5835 15 6 7.0261 3.3339 6.8659 16 1 7.2409 2.6124 7.6403 17 6 7.1469 4.7025 7.1314 18 7 6.5699 5.5748 6.3455 19 14 8.1320 5.2840 8.6083 20 1 9.5475 5.4895 8.2092 21 1 7.5674 6.5638 9.1071 22 1 8.0641 4.2609 9.6825 23 6 6.0128 1.6375 5.4239 24 6 5.6243 1.2211 4.1711 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8935 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 2.3431 1.2976 -2.1870 31 1 1.4078 2.7623 -1.6595 32 1 3.3466 3.6772 -0.4639 33 1 4.2981 2.6732 -1.6419 34 1 3.9274 2.9936 1.5516 35 1 6.0615 2.0002 0.9472 36 1 5.4635 0.4801 1.6542 37 1 6.6006 3.8981 2.3468 38 1 7.2965 4.6809 4.5685 39 1 6.6534 6.5235 6.5298 40 1 5.8493 1.0016 6.2813 41 1 5.1555 0.2562 4.0462 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516769156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:02 Heat of formation + Delta-G solvation = 2.247780 kcal Electronic energy + Delta-G solvation = -18549.282206 eV Core-core repulsion = 15813.588101 eV Total energy + Delta-G solvation = -2735.694105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.39917 -39.38863 -36.21583 -34.87215 -33.24086 -31.54873 -31.08979 -28.14462 -26.51124 -25.39165 -23.96467 -22.87586 -22.31706 -21.68822 -20.36812 -19.20687 -17.29695 -16.84173 -16.33606 -15.91834 -15.67648 -15.43217 -15.20950 -14.88246 -14.33051 -14.16064 -13.80179 -13.61281 -13.48200 -13.41327 -13.07112 -12.91951 -12.73780 -12.64609 -12.45581 -12.19165 -12.07241 -11.97584 -11.55557 -11.43279 -11.26678 -11.04983 -10.94465 -10.86589 -9.37560 -9.23038 -9.05094 -8.62963 -6.32488 0.95602 1.16956 1.37648 1.50990 1.51776 2.21046 2.70127 3.41212 3.70497 3.78770 3.87128 3.93691 4.08220 4.32196 4.38865 4.42361 4.45788 4.61652 4.65466 4.70327 4.74565 4.82471 4.85846 4.93473 5.05731 5.07332 5.09455 5.17351 5.21189 5.26032 5.38458 5.40783 5.49261 5.49611 5.63373 5.72620 5.97901 6.11568 6.24919 6.34798 6.41509 6.56138 6.71895 6.95607 7.05711 8.33969 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035962 B = 0.003585 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.405372 B = 7808.831166 C = 7992.852093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.098 4.098 4 H 0.077 0.923 5 C -0.123 4.123 6 C -0.170 4.170 7 C 0.064 3.936 8 H 0.096 0.904 9 N -0.684 5.684 10 C 0.133 3.867 11 C -0.200 4.200 12 C -0.098 4.098 13 C -0.190 4.190 14 C 0.079 3.921 15 C -0.504 4.504 16 H 0.073 0.927 17 C 0.035 3.965 18 N -0.826 5.826 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.246 4.246 24 C -0.074 4.074 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.338 0.662 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.287 0.713 40 H 0.093 0.907 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.659 -5.115 -13.106 15.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.117 4.117 4 H 0.095 0.905 5 C -0.161 4.161 6 C -0.209 4.209 7 C -0.046 4.046 8 H 0.114 0.886 9 N -0.313 5.313 10 C 0.005 3.995 11 C -0.202 4.202 12 C -0.117 4.117 13 C -0.209 4.209 14 C 0.077 3.923 15 C -0.534 4.534 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.452 5.452 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.265 4.265 24 C -0.092 4.092 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.156 0.844 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.984 -5.419 -12.804 15.559 hybrid contribution 0.898 1.148 0.432 1.520 sum -6.086 -4.271 -12.372 14.434 Atomic orbital electron populations 1.21725 0.95375 1.01716 1.01657 1.21439 0.96255 0.95473 1.01569 1.22720 0.95006 0.97004 0.97012 0.90513 1.22826 0.96967 1.00069 0.96246 1.23617 0.99160 0.98427 0.99729 1.23272 0.96507 0.97924 0.86897 0.88582 1.60508 1.22180 1.19451 1.29193 1.20476 0.87963 0.99235 0.91849 1.19376 1.09305 0.96262 0.95251 1.20773 0.99226 0.95630 0.96059 1.21252 1.06510 1.00932 0.92252 1.17960 0.88866 0.91751 0.93726 1.19845 1.42815 0.92932 0.97781 0.90896 1.26754 0.94004 0.96332 1.00888 1.69888 1.33388 1.03780 1.38109 0.85201 0.78748 0.78215 0.77504 1.18660 1.19167 1.18298 1.21174 1.09084 0.99423 0.96828 1.20641 0.97957 0.98452 0.92164 0.93611 0.92120 0.92335 0.91217 0.93179 0.88993 0.90902 0.90728 0.91191 0.84396 0.95298 0.91087 0.87878 0.88281 0.90206 0.88865 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.90 71.98 0.71 -1.80 16 2 C -0.11 -2.12 5.77 30.60 0.18 -1.95 16 3 C -0.10 -2.09 3.45 -10.27 -0.04 -2.12 16 4 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16 5 C -0.12 -2.14 7.64 31.18 0.24 -1.90 16 6 C -0.17 -3.49 7.72 31.18 0.24 -3.25 16 7 C 0.06 1.53 3.72 45.44 0.17 1.70 16 8 H 0.10 2.20 7.84 -2.39 -0.02 2.18 16 9 N -0.68 -21.08 6.60 -492.86 -3.25 -24.33 16 10 C 0.13 4.43 5.66 85.56 0.48 4.92 16 11 C -0.20 -8.54 5.41 -19.68 -0.11 -8.65 16 12 C -0.10 -4.56 9.67 22.22 0.21 -4.35 16 13 C -0.19 -10.23 8.70 22.73 0.20 -10.04 16 14 C 0.08 4.43 5.58 -21.29 -0.12 4.31 16 15 C -0.50 -28.14 9.05 23.46 0.21 -27.92 16 16 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 17 C 0.03 1.80 5.14 85.26 0.44 2.24 16 18 N -0.83 -44.20 10.95 21.83 0.24 -43.96 16 19 Si 0.98 39.10 29.60 68.60 2.03 41.13 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 C -0.25 -12.56 9.80 22.73 0.22 -12.34 16 24 C -0.07 -3.32 9.67 22.22 0.21 -3.11 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 1.16 7.84 -2.39 -0.02 1.14 16 29 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.09 1.35 7.90 -2.39 -0.02 1.33 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.64 7.83 -2.39 -0.02 1.62 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.34 10.92 8.20 -89.70 -0.74 10.18 16 35 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 36 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 37 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 38 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 39 H 0.29 13.87 8.30 -92.70 -0.77 13.10 16 40 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -58.67 334.60 2.53 -56.14 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.26 Total: 35.30 kcal Atomic # 6 Polarization: -67.53 SS G_CDS: 3.26 Total: -64.27 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -3.02 Total: -68.29 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -58.67 2.53 -56.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516769156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.390 kcal (2) G-P(sol) polarization free energy of solvation -58.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds