Wall clock time and date at job start Mon Mar 30 2020 07:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47170 * 2 1 4 4 C 1.50704 * 109.47322 * 119.99998 * 2 1 3 5 5 C 1.38262 * 120.08769 * 299.72604 * 4 2 1 6 6 C 1.38009 * 119.87062 * 180.20972 * 5 4 2 7 7 C 1.38726 * 120.37732 * 359.93289 * 6 5 4 8 8 C 1.37831 * 119.72799 * 0.17141 * 7 6 5 9 9 C 1.38035 * 120.08612 * 120.00086 * 4 2 1 10 10 C 1.50712 * 121.66793 * 179.69121 * 8 7 6 11 11 C 1.52895 * 109.95303 * 16.90788 * 10 8 7 12 12 N 1.47158 * 108.50665 * 309.59827 * 11 10 8 13 13 C 1.46901 * 110.99731 * 307.85057 * 12 11 10 14 14 C 1.46633 * 110.25095 * 71.26392 * 12 11 10 15 15 H 1.09000 * 109.26845 * 67.75463 * 14 12 11 16 16 C 1.50705 * 109.27425 * 187.26264 * 14 12 11 17 17 H 1.07995 * 119.99993 * 120.00218 * 16 14 12 18 18 C 1.37877 * 119.99547 * 300.00279 * 16 14 12 19 19 N 1.31507 * 120.00660 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99556 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47286 * 60.00239 * 20 18 16 22 22 H 1.48504 * 109.46837 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47439 * 300.00147 * 20 18 16 24 24 H 1.08998 * 109.47026 * 299.99624 * 1 2 3 25 25 H 1.09001 * 109.46901 * 60.00221 * 1 2 3 26 26 H 1.09000 * 109.46628 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47679 * 240.00286 * 2 1 3 28 28 H 1.09004 * 109.47039 * 59.99899 * 3 2 1 29 29 H 1.08999 * 109.47647 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47386 * 300.00359 * 3 2 1 31 31 H 1.08006 * 120.06143 * 0.18801 * 5 4 2 32 32 H 1.08003 * 119.81237 * 179.97438 * 6 5 4 33 33 H 1.08003 * 119.82297 * 359.79545 * 9 4 2 34 34 H 1.08995 * 109.39767 * 137.05843 * 10 8 7 35 35 H 1.08998 * 109.39285 * 256.76830 * 10 8 7 36 36 H 1.08997 * 109.63182 * 69.30455 * 11 10 8 37 37 H 1.09004 * 109.63304 * 189.69577 * 11 10 8 38 38 H 1.08997 * 109.47458 * 63.94982 * 13 12 11 39 39 H 1.09009 * 109.46946 * 183.94827 * 13 12 11 40 40 H 1.09001 * 109.47345 * 303.94417 * 13 12 11 41 41 H 0.97002 * 120.00517 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.7042 -0.2363 2.4871 6 6 2.1703 -0.8879 3.6109 7 6 2.9658 -2.0176 3.4875 8 6 3.2945 -2.4886 2.2345 9 6 2.8261 -1.8328 1.1059 10 6 4.1612 -3.7076 2.0496 11 6 4.2233 -4.5060 3.3520 12 7 4.5726 -3.5871 4.4471 13 6 5.7797 -2.8155 4.1219 14 6 3.4447 -2.6982 4.7430 15 1 2.6289 -3.2819 5.1694 16 6 3.8819 -1.6540 5.7379 17 1 3.8334 -0.6069 5.4782 18 6 4.3437 -2.0358 6.9797 19 7 4.4033 -3.3109 7.2958 20 14 4.8863 -0.7416 8.2127 21 1 3.7474 0.1618 8.5157 22 1 5.3375 -1.4063 9.4617 23 1 6.0061 0.0485 7.6407 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.0845 0.6424 2.5890 32 1 1.9137 -0.5165 4.5921 33 1 3.0834 -2.2025 0.1242 34 1 3.7427 -4.3332 1.2613 35 1 5.1672 -3.3970 1.7674 36 1 3.2522 -4.9595 3.5503 37 1 4.9809 -5.2852 3.2682 38 1 5.5826 -2.1789 3.2593 39 1 6.0557 -2.1959 4.9752 40 1 6.5964 -3.4991 3.8900 41 1 4.7279 -3.5794 8.1695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527422929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:08 Heat of formation + Delta-G solvation = 17.382529 kcal Electronic energy + Delta-G solvation = -20004.421803 eV Core-core repulsion = 17269.383989 eV Total energy + Delta-G solvation = -2735.037814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.76508 -37.29078 -34.39859 -33.16171 -31.26383 -29.58374 -28.51129 -27.06687 -26.19682 -25.07846 -22.65909 -22.51171 -21.04697 -20.07167 -17.91150 -16.30348 -15.86372 -15.24267 -14.72661 -14.42329 -14.21060 -13.89068 -13.54961 -13.28583 -13.04059 -12.98470 -12.41789 -12.25781 -12.13499 -11.79311 -11.53588 -11.30737 -11.13308 -11.03352 -10.93139 -10.72609 -10.64489 -10.48771 -10.29628 -10.20874 -9.95715 -9.72441 -9.07399 -8.43085 -8.04099 -7.59347 -6.78887 -5.91628 -4.04013 2.05498 2.10843 3.32533 3.38136 3.40589 4.37770 4.49295 4.89114 5.00054 5.17216 5.32245 5.42879 5.52988 5.57522 5.65303 5.66269 5.79621 5.81804 5.87792 5.89005 6.00229 6.03021 6.12054 6.12604 6.28515 6.31516 6.47237 6.50342 6.56634 6.64243 6.72415 6.77933 6.91164 7.16737 7.19213 7.25895 7.40202 7.56179 7.75049 7.86666 8.12971 8.56881 8.71309 9.05563 9.61345 11.12333 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.006724 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.054916 B = 4162.990955 C = 4957.895391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.142 4.142 4 C -0.101 4.101 5 C -0.127 4.127 6 C -0.100 4.100 7 C -0.070 4.070 8 C -0.091 4.091 9 C -0.125 4.125 10 C -0.113 4.113 11 C 0.047 3.953 12 N -0.492 5.492 13 C 0.047 3.953 14 C 0.244 3.756 15 H 0.056 0.944 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.082 3.918 19 N -0.846 5.846 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.278 1.278 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.007 0.993 39 H 0.076 0.924 40 H 0.032 0.968 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 3.502 -12.043 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.199 4.199 4 C -0.101 4.101 5 C -0.145 4.145 6 C -0.119 4.119 7 C -0.072 4.072 8 C -0.091 4.091 9 C -0.143 4.143 10 C -0.151 4.151 11 C -0.082 4.082 12 N -0.213 5.213 13 C -0.102 4.102 14 C 0.138 3.862 15 H 0.073 0.927 16 C -0.568 4.568 17 H 0.077 0.923 18 C -0.125 4.125 19 N -0.480 5.480 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.595 3.047 -11.439 12.371 hybrid contribution 0.219 1.200 -0.118 1.225 sum -3.376 4.247 -11.557 12.767 Atomic orbital electron populations 1.21836 0.94915 1.01751 1.01378 1.20008 0.95482 0.95700 0.95689 1.21839 1.01181 0.95532 1.01370 1.19516 0.99878 0.96591 0.94154 1.20837 1.01340 1.00091 0.92278 1.21256 0.97115 0.95129 0.98379 1.21138 0.94679 0.94991 0.96417 1.19590 0.99407 0.97338 0.92809 1.20797 0.99736 0.96398 0.97367 1.21086 0.98491 0.95207 1.00349 1.22216 1.00645 0.96255 0.89061 1.62869 1.04596 1.19555 1.34230 1.22057 0.92221 0.96313 0.99573 1.18379 0.89971 0.90547 0.87315 0.92690 1.20882 1.46498 0.91751 0.97682 0.92346 1.24946 0.95071 0.94793 0.97676 1.70086 1.43243 1.14248 1.20427 0.86861 0.79187 0.82108 0.80995 1.20292 1.21299 1.20324 0.92497 0.93025 0.92721 0.91283 0.92494 0.92707 0.93016 0.87355 0.85503 0.87635 0.92083 0.91393 0.91848 0.92063 0.97467 0.90494 0.94944 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.01 37.16 0.33 -1.27 16 2 C -0.05 -0.64 3.10 -91.77 -0.28 -0.93 16 3 C -0.14 -1.66 9.00 37.16 0.33 -1.32 16 4 C -0.10 -1.64 4.77 -104.69 -0.50 -2.14 16 5 C -0.13 -2.21 8.72 -39.66 -0.35 -2.55 16 6 C -0.10 -2.04 8.73 -39.48 -0.34 -2.38 16 7 C -0.07 -1.53 4.94 -104.63 -0.52 -2.05 16 8 C -0.09 -1.78 5.05 -104.60 -0.53 -2.30 16 9 C -0.12 -2.15 9.29 -39.49 -0.37 -2.52 16 10 C -0.11 -1.99 5.16 -27.93 -0.14 -2.14 16 11 C 0.05 0.94 6.06 -3.74 -0.02 0.91 16 12 N -0.49 -11.57 4.44 -237.79 -1.06 -12.63 16 13 C 0.05 1.05 8.25 60.06 0.50 1.55 16 14 C 0.24 6.01 2.11 -70.20 -0.15 5.86 16 15 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 16 C -0.53 -13.90 6.14 -34.44 -0.21 -14.11 16 17 H 0.06 1.54 6.74 -52.49 -0.35 1.18 16 18 C 0.08 2.20 4.89 -17.82 -0.09 2.11 16 19 N -0.85 -23.74 12.76 55.43 0.71 -23.03 16 20 Si 0.88 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.06 0.65 7.41 -51.93 -0.38 0.27 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 28 H 0.06 0.67 7.39 -51.93 -0.38 0.29 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.11 1.64 7.12 -52.48 -0.37 1.27 16 32 H 0.13 2.63 7.10 -52.48 -0.37 2.26 16 33 H 0.11 1.59 7.94 -52.48 -0.42 1.18 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.18 6.93 -51.93 -0.36 0.82 16 36 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.01 0.15 5.68 -51.93 -0.29 -0.14 16 39 H 0.08 1.91 6.48 -51.92 -0.34 1.57 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -27.72 315.44 -9.57 -37.30 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.62 Total: 1.20 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -2.33 Total: -23.28 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.35 Total: -35.66 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.72 -9.57 -37.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527422929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.680 kcal (2) G-P(sol) polarization free energy of solvation -27.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds