Wall clock time and date at job start Mon Mar 30 2020 07:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47170 * 2 1 4 4 C 1.50704 * 109.47322 * 119.99998 * 2 1 3 5 5 C 1.38262 * 120.08769 * 299.72604 * 4 2 1 6 6 C 1.38009 * 119.87062 * 180.20972 * 5 4 2 7 7 C 1.38726 * 120.37732 * 359.93289 * 6 5 4 8 8 C 1.37831 * 119.72799 * 0.17141 * 7 6 5 9 9 C 1.38035 * 120.08612 * 120.00086 * 4 2 1 10 10 C 1.50712 * 121.66793 * 179.69121 * 8 7 6 11 11 C 1.52895 * 109.95303 * 16.90788 * 10 8 7 12 12 N 1.47158 * 108.50665 * 309.59827 * 11 10 8 13 13 C 1.46901 * 110.99731 * 307.85057 * 12 11 10 14 14 C 1.46633 * 110.25095 * 71.26392 * 12 11 10 15 15 H 1.09000 * 109.26845 * 67.75463 * 14 12 11 16 16 C 1.50705 * 109.27425 * 187.26264 * 14 12 11 17 17 H 1.07995 * 119.99993 * 120.00218 * 16 14 12 18 18 C 1.37877 * 119.99547 * 300.00279 * 16 14 12 19 19 N 1.31507 * 120.00660 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99556 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47286 * 60.00239 * 20 18 16 22 22 H 1.48504 * 109.46837 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47439 * 300.00147 * 20 18 16 24 24 H 1.08998 * 109.47026 * 299.99624 * 1 2 3 25 25 H 1.09001 * 109.46901 * 60.00221 * 1 2 3 26 26 H 1.09000 * 109.46628 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47679 * 240.00286 * 2 1 3 28 28 H 1.09004 * 109.47039 * 59.99899 * 3 2 1 29 29 H 1.08999 * 109.47647 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47386 * 300.00359 * 3 2 1 31 31 H 1.08006 * 120.06143 * 0.18801 * 5 4 2 32 32 H 1.08003 * 119.81237 * 179.97438 * 6 5 4 33 33 H 1.08003 * 119.82297 * 359.79545 * 9 4 2 34 34 H 1.08995 * 109.39767 * 137.05843 * 10 8 7 35 35 H 1.08998 * 109.39285 * 256.76830 * 10 8 7 36 36 H 1.08997 * 109.63182 * 69.30455 * 11 10 8 37 37 H 1.09004 * 109.63304 * 189.69577 * 11 10 8 38 38 H 1.08997 * 109.47458 * 63.94982 * 13 12 11 39 39 H 1.09009 * 109.46946 * 183.94827 * 13 12 11 40 40 H 1.09001 * 109.47345 * 303.94417 * 13 12 11 41 41 H 0.97002 * 120.00517 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.7042 -0.2363 2.4871 6 6 2.1703 -0.8879 3.6109 7 6 2.9658 -2.0176 3.4875 8 6 3.2945 -2.4886 2.2345 9 6 2.8261 -1.8328 1.1059 10 6 4.1612 -3.7076 2.0496 11 6 4.2233 -4.5060 3.3520 12 7 4.5726 -3.5871 4.4471 13 6 5.7797 -2.8155 4.1219 14 6 3.4447 -2.6982 4.7430 15 1 2.6289 -3.2819 5.1694 16 6 3.8819 -1.6540 5.7379 17 1 3.8334 -0.6069 5.4782 18 6 4.3437 -2.0358 6.9797 19 7 4.4033 -3.3109 7.2958 20 14 4.8863 -0.7416 8.2127 21 1 3.7474 0.1618 8.5157 22 1 5.3375 -1.4063 9.4617 23 1 6.0061 0.0485 7.6407 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.0845 0.6424 2.5890 32 1 1.9137 -0.5165 4.5921 33 1 3.0834 -2.2025 0.1242 34 1 3.7427 -4.3332 1.2613 35 1 5.1672 -3.3970 1.7674 36 1 3.2522 -4.9595 3.5503 37 1 4.9809 -5.2852 3.2682 38 1 5.5826 -2.1789 3.2593 39 1 6.0557 -2.1959 4.9752 40 1 6.5964 -3.4991 3.8900 41 1 4.7279 -3.5794 8.1695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527422929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:07 Heat of formation + Delta-G solvation = 2.898285 kcal Electronic energy + Delta-G solvation = -20005.049887 eV Core-core repulsion = 17269.383989 eV Total energy + Delta-G solvation = -2735.665897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.27963 -38.72954 -35.67061 -35.00154 -33.01026 -31.06618 -30.05620 -27.93811 -27.91040 -26.95197 -24.17623 -23.94988 -22.63844 -21.45660 -19.37526 -18.29358 -17.34639 -16.70865 -16.25650 -16.18500 -15.82787 -15.15508 -14.96581 -14.63816 -14.58702 -14.20310 -14.03641 -13.65907 -13.42612 -13.11787 -13.03669 -12.87609 -12.70378 -12.54824 -12.46121 -12.29356 -12.08806 -11.90264 -11.81052 -11.76751 -11.49638 -11.31618 -10.92973 -10.49623 -9.48433 -9.11360 -8.54006 -7.97217 -6.15026 0.60454 0.65188 1.42627 1.43387 1.50350 2.45774 2.96913 3.22022 3.71244 3.82266 3.93864 4.12474 4.21697 4.32342 4.35014 4.38545 4.46657 4.53661 4.67526 4.71104 4.79941 4.83930 4.84609 4.94303 4.99260 5.02631 5.08046 5.14512 5.16856 5.29387 5.32980 5.38384 5.43161 5.45241 5.53334 5.73170 5.80099 5.84050 5.86858 6.17324 6.34274 6.67759 6.89215 7.09606 7.53164 9.05873 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.006724 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.054916 B = 4162.990955 C = 4957.895391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C -0.141 4.141 4 C -0.090 4.090 5 C -0.125 4.125 6 C -0.120 4.120 7 C -0.103 4.103 8 C -0.101 4.101 9 C -0.126 4.126 10 C -0.104 4.104 11 C 0.046 3.954 12 N -0.518 5.518 13 C 0.060 3.940 14 C 0.251 3.749 15 H 0.009 0.991 16 C -0.533 4.533 17 H 0.050 0.950 18 C 0.039 3.961 19 N -0.878 5.878 20 Si 0.939 3.061 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.011 0.989 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 4.505 -14.928 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.090 4.090 5 C -0.143 4.143 6 C -0.139 4.139 7 C -0.105 4.105 8 C -0.101 4.101 9 C -0.144 4.144 10 C -0.142 4.142 11 C -0.082 4.082 12 N -0.239 5.239 13 C -0.088 4.088 14 C 0.144 3.856 15 H 0.026 0.974 16 C -0.572 4.572 17 H 0.068 0.932 18 C -0.165 4.165 19 N -0.514 5.514 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.200 1.200 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.147 0.853 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.029 0.971 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.687 4.060 -14.333 15.346 hybrid contribution 0.176 0.900 0.693 1.150 sum -3.511 4.960 -13.640 14.932 Atomic orbital electron populations 1.21827 0.93715 1.01778 1.02409 1.20104 0.96400 0.96032 0.94189 1.21833 1.00682 0.94886 1.02410 1.19986 0.98068 0.95873 0.95077 1.21023 1.01042 1.00341 0.91908 1.21212 0.98189 0.95730 0.98762 1.20899 0.97031 0.96308 0.96282 1.19826 0.99661 0.98111 0.92504 1.21133 0.99111 0.96291 0.97827 1.21027 0.98876 0.94604 0.99710 1.22249 1.00602 0.96119 0.89248 1.62649 1.04556 1.19973 1.36731 1.21883 0.92426 0.96293 0.98217 1.17983 0.89087 0.89909 0.88613 0.97355 1.21087 1.45722 0.91842 0.98501 0.93196 1.25580 0.95242 0.96401 0.99263 1.70212 1.44604 1.15891 1.20705 0.85938 0.78786 0.79903 0.78880 1.19851 1.21038 1.20014 0.92928 0.90632 0.93228 0.89722 0.92976 0.93506 0.90562 0.85261 0.87506 0.84597 0.88997 0.90575 0.92937 0.90275 0.97104 0.93648 0.92837 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.01 71.98 0.65 -2.01 16 2 C -0.05 -1.05 3.10 -11.54 -0.04 -1.09 16 3 C -0.14 -2.77 9.00 71.98 0.65 -2.12 16 4 C -0.09 -2.67 4.77 -19.91 -0.10 -2.77 16 5 C -0.13 -4.21 8.72 22.22 0.19 -4.01 16 6 C -0.12 -5.02 8.73 22.33 0.19 -4.83 16 7 C -0.10 -4.60 4.94 -19.87 -0.10 -4.70 16 8 C -0.10 -3.80 5.05 -19.85 -0.10 -3.90 16 9 C -0.13 -3.97 9.29 22.33 0.21 -3.76 16 10 C -0.10 -3.46 5.16 29.82 0.15 -3.30 16 11 C 0.05 1.82 6.06 86.22 0.52 2.34 16 12 N -0.52 -24.97 4.44 -906.25 -4.03 -29.00 16 13 C 0.06 2.72 8.25 127.69 1.05 3.78 16 14 C 0.25 12.98 2.11 43.45 0.09 13.07 16 15 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 16 C -0.53 -29.29 6.14 25.60 0.16 -29.14 16 17 H 0.05 2.75 6.74 -2.91 -0.02 2.74 16 18 C 0.04 2.15 4.89 84.66 0.41 2.57 16 19 N -0.88 -51.26 12.76 21.45 0.27 -50.99 16 20 Si 0.94 43.76 29.54 68.60 2.03 45.79 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 24 H 0.05 1.04 7.41 -2.39 -0.02 1.03 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 27 H 0.08 1.62 7.88 -2.38 -0.02 1.60 16 28 H 0.05 1.07 7.39 -2.38 -0.02 1.05 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.13 3.71 7.12 -2.91 -0.02 3.69 16 32 H 0.11 4.73 7.10 -2.91 -0.02 4.71 16 33 H 0.14 3.46 7.94 -2.91 -0.02 3.44 16 34 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.08 2.43 6.93 -2.39 -0.02 2.42 16 36 H 0.05 2.13 8.05 -2.39 -0.02 2.11 16 37 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.01 0.47 5.68 -2.39 -0.01 0.45 16 39 H 0.04 2.30 6.48 -2.38 -0.02 2.29 16 40 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -62.17 315.44 3.22 -58.95 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.99 Total: 15.12 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 3.96 Total: -39.88 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -3.75 Total: -79.98 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -62.17 3.22 -58.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527422929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.846 kcal (2) G-P(sol) polarization free energy of solvation -62.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds