Wall clock time and date at job start Mon Mar 30 2020 07:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47204 * 2 1 4 4 H 1.09003 * 109.47200 * 303.03264 * 3 2 1 5 5 C 1.50697 * 109.47299 * 183.02736 * 3 2 1 6 6 H 1.07999 * 120.00104 * 239.72117 * 5 3 2 7 7 C 1.37880 * 119.99714 * 60.00029 * 5 3 2 8 8 N 1.31516 * 120.00074 * 359.72193 * 7 5 3 9 9 Si 1.86801 * 120.00084 * 179.72423 * 7 5 3 10 10 H 1.48498 * 109.46752 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47086 * 119.99935 * 9 7 5 12 12 H 1.48494 * 109.47061 * 240.00143 * 9 7 5 13 13 N 1.46903 * 109.47174 * 63.02975 * 3 2 1 14 14 C 1.46899 * 111.00057 * 201.08426 * 13 3 2 15 15 C 1.53003 * 109.47096 * 184.80942 * 14 13 3 16 16 C 1.50701 * 109.46884 * 180.02562 * 15 14 13 17 17 C 1.32558 * 120.00259 * 127.21583 * 16 15 14 18 18 C 1.47813 * 120.00069 * 7.30447 * 17 16 15 19 19 C 1.39535 * 120.13994 * 218.33137 * 18 17 16 20 20 C 1.37985 * 119.85174 * 179.67381 * 19 18 17 21 21 C 1.38345 * 120.14171 * 0.62432 * 20 19 18 22 22 C 1.38346 * 120.28552 * 359.67488 * 21 20 19 23 23 C 1.37979 * 120.14382 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.47005 * 64.92018 * 1 2 3 25 25 H 1.09003 * 109.47322 * 184.91955 * 1 2 3 26 26 H 1.09000 * 109.47205 * 304.91772 * 1 2 3 27 27 H 1.08992 * 109.46923 * 239.99542 * 2 1 3 28 28 H 1.09005 * 109.46569 * 119.99980 * 2 1 3 29 29 H 0.97002 * 120.00281 * 179.97438 * 8 7 5 30 30 H 1.00893 * 110.99917 * 77.12713 * 13 3 2 31 31 H 1.09003 * 109.46703 * 304.80770 * 14 13 3 32 32 H 1.08997 * 109.47205 * 64.80327 * 14 13 3 33 33 H 1.09001 * 109.46693 * 299.99596 * 15 14 13 34 34 H 1.08994 * 109.47102 * 59.99518 * 15 14 13 35 35 H 1.08006 * 119.99720 * 307.20639 * 16 15 14 36 36 H 1.08002 * 120.00015 * 187.30573 * 17 16 15 37 37 H 1.07998 * 120.07673 * 359.97438 * 19 18 17 38 38 H 1.07999 * 119.92262 * 180.32072 * 20 19 18 39 39 H 1.07993 * 119.85635 * 179.69453 * 21 20 19 40 40 H 1.07996 * 119.92719 * 180.02562 * 22 21 20 41 41 H 1.07993 * 120.07315 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6330 1.9718 -0.8616 5 6 3.5451 1.4432 -0.0750 6 1 4.1249 1.9007 0.7130 7 6 4.1819 0.8647 -1.1526 8 7 3.4759 0.3076 -2.1121 9 14 6.0474 0.8723 -1.2495 10 1 6.6022 1.5564 -0.0539 11 1 6.5463 -0.5256 -1.2967 12 1 6.4764 1.5927 -2.4750 13 7 1.6111 2.1135 1.2344 14 6 1.6273 3.5735 1.0728 15 6 1.2919 4.2383 2.4095 16 6 1.3080 5.7361 2.2435 17 6 0.2628 6.4565 2.6252 18 6 -0.8487 5.8152 3.3588 19 6 -2.1675 6.1913 3.1012 20 6 -3.2009 5.5839 3.7847 21 6 -2.9309 4.6133 4.7329 22 6 -1.6252 4.2405 4.9974 23 6 -0.5832 4.8349 4.3157 24 1 -0.3633 0.4356 -0.9308 25 1 -0.3634 -1.0239 0.0881 26 1 -0.3633 0.5882 0.8427 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 3.9238 -0.0990 -2.8704 30 1 2.1812 1.8299 2.0170 31 1 2.6176 3.8920 0.7470 32 1 0.8882 3.8648 0.3265 33 1 0.3017 3.9198 2.7352 34 1 2.0310 3.9470 3.1557 35 1 2.1713 6.2225 1.8138 36 1 0.2233 7.5121 2.4000 37 1 -2.3792 6.9525 2.3650 38 1 -4.2224 5.8704 3.5825 39 1 -3.7430 4.1445 5.2686 40 1 -1.4211 3.4819 5.7384 41 1 0.4356 4.5427 4.5228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565169856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:56 Heat of formation + Delta-G solvation = 26.746781 kcal Electronic energy + Delta-G solvation = -18699.353540 eV Core-core repulsion = 15964.721791 eV Total energy + Delta-G solvation = -2734.631749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.34736 -36.61709 -35.10878 -32.59933 -31.37873 -30.92612 -29.80167 -27.82528 -25.79520 -23.26774 -22.48603 -22.36272 -21.06811 -19.56384 -18.94837 -16.70175 -16.36832 -15.60786 -15.28394 -14.78087 -14.50482 -13.99537 -13.68992 -13.49468 -13.36834 -13.00086 -12.68854 -12.53209 -12.23746 -11.61117 -11.51609 -11.20374 -11.08686 -11.03454 -10.86132 -10.74234 -10.61066 -10.46449 -10.09293 -9.65787 -9.56274 -9.39376 -9.02050 -8.82848 -8.37060 -8.11945 -7.20535 -5.97993 -4.11382 1.10257 1.44034 2.47247 3.25775 3.34331 3.37279 3.88595 4.39930 4.80396 4.91551 4.97747 5.07969 5.14278 5.26858 5.47501 5.49672 5.57743 5.67867 5.75909 5.93868 6.00701 6.12237 6.22959 6.40505 6.41622 6.46651 6.53398 6.55807 6.63659 6.70731 6.75715 6.78634 6.93406 7.05705 7.16506 7.22517 7.46532 7.63039 7.79894 8.11228 8.18953 8.36282 8.69805 9.01929 9.56259 11.01650 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026155 B = 0.004228 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.295518 B = 6620.294052 C = 7235.245822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.689 5.689 14 C 0.072 3.928 15 C -0.110 4.110 16 C -0.117 4.117 17 C -0.147 4.147 18 C -0.046 4.046 19 C -0.114 4.114 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.105 4.105 24 H 0.035 0.965 25 H 0.024 0.976 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.325 0.675 31 H 0.030 0.970 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 9.852 11.188 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.050 0.950 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.318 5.318 14 C -0.058 4.058 15 C -0.147 4.147 16 C -0.136 4.136 17 C -0.165 4.165 18 C -0.046 4.046 19 C -0.132 4.132 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.139 4.139 23 C -0.123 4.123 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.140 0.860 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.035 9.691 10.849 17.673 hybrid contribution 2.099 0.179 -0.292 2.127 sum -7.935 9.870 10.558 16.488 Atomic orbital electron populations 1.21720 0.99007 0.98423 1.00474 1.21492 0.92083 0.99205 1.01665 1.19125 0.92382 0.91083 0.86808 0.95049 1.21908 0.92774 1.37351 1.06322 0.92878 1.24939 0.97984 0.95040 0.95591 1.69891 1.34849 1.37721 1.09882 0.86612 0.86183 0.77740 0.77883 1.19963 1.20950 1.21057 1.60935 1.58413 1.04119 1.08313 1.21676 0.99392 0.89843 0.94851 1.21234 1.03175 0.91279 0.99010 1.23408 0.96942 0.96176 0.97032 1.21569 0.93976 0.99145 1.01830 1.19073 0.93230 0.96213 0.96127 1.21241 0.92050 1.00309 0.99634 1.21042 0.98866 0.97303 0.96966 1.21154 0.96698 0.97956 0.98529 1.21094 0.92808 1.00022 0.99974 1.21462 0.99650 0.95694 0.95523 0.94619 0.95714 0.92996 0.89213 0.95167 0.92965 0.85975 0.95196 0.92461 0.89506 0.91469 0.86743 0.86527 0.86201 0.86338 0.86419 0.86081 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.85 37.16 0.37 -2.57 16 2 C -0.11 -2.58 5.44 -26.73 -0.15 -2.72 16 3 C 0.21 5.36 1.98 -68.87 -0.14 5.22 16 4 H 0.03 0.88 7.92 -51.93 -0.41 0.47 16 5 C -0.54 -14.73 8.13 -34.44 -0.28 -15.01 16 6 H 0.05 1.43 7.80 -52.49 -0.41 1.02 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -25.16 11.29 55.43 0.63 -24.54 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.69 -14.56 5.55 -107.95 -0.60 -15.16 16 14 C 0.07 1.37 5.48 -3.82 -0.02 1.35 16 15 C -0.11 -1.66 4.19 -27.88 -0.12 -1.77 16 16 C -0.12 -1.55 9.46 -36.22 -0.34 -1.89 16 17 C -0.15 -1.81 9.79 -37.57 -0.37 -2.17 16 18 C -0.05 -0.59 5.15 -105.01 -0.54 -1.13 16 19 C -0.11 -1.34 9.79 -39.19 -0.38 -1.72 16 20 C -0.12 -1.34 10.03 -39.63 -0.40 -1.74 16 21 C -0.13 -1.35 10.04 -39.50 -0.40 -1.75 16 22 C -0.12 -1.39 10.03 -39.64 -0.40 -1.79 16 23 C -0.11 -1.32 7.30 -39.19 -0.29 -1.60 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 1.07 7.55 -51.93 -0.39 0.67 16 27 H 0.09 2.43 5.98 -51.93 -0.31 2.12 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.32 6.71 8.46 -39.30 -0.33 6.37 16 31 H 0.03 0.61 7.76 -51.93 -0.40 0.21 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.35 4.78 -51.93 -0.25 1.10 16 34 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 35 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.13 1.53 6.36 -52.49 -0.33 1.19 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -28.49 333.51 -10.13 -38.62 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.62 Total: 7.46 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -3.54 Total: -27.55 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.03 Total: -39.70 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.49 -10.13 -38.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565169856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.366 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds