Wall clock time and date at job start Mon Mar 30 2020 07:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46882 * 2 1 4 4 H 1.09005 * 109.46827 * 305.65049 * 3 2 1 5 5 C 1.50701 * 109.46846 * 185.65673 * 3 2 1 6 6 H 1.08000 * 119.99765 * 239.99694 * 5 3 2 7 7 C 1.37875 * 120.00468 * 59.99755 * 5 3 2 8 8 N 1.31518 * 119.99734 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00164 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46964 * 60.00203 * 9 7 5 11 11 H 1.48499 * 109.47045 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46934 * 299.99920 * 9 7 5 13 13 N 1.46897 * 109.47142 * 65.65116 * 3 2 1 14 14 C 1.46899 * 110.99886 * 205.57985 * 13 3 2 15 15 C 1.52998 * 109.46969 * 183.44547 * 14 13 3 16 16 C 1.50698 * 109.47196 * 180.02562 * 15 14 13 17 17 C 1.32564 * 120.00311 * 125.00154 * 16 15 14 18 18 C 1.47813 * 120.00321 * 179.72682 * 17 16 15 19 19 C 1.39537 * 120.13885 * 359.97438 * 18 17 16 20 20 C 1.37978 * 119.85316 * 179.76673 * 19 18 17 21 21 C 1.38337 * 120.14299 * 0.51572 * 20 19 18 22 22 C 1.38351 * 120.28565 * 359.73614 * 21 20 19 23 23 C 1.37967 * 120.14393 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.46764 * 175.51470 * 1 2 3 25 25 H 1.08990 * 109.47281 * 295.51624 * 1 2 3 26 26 H 1.08998 * 109.46706 * 55.52037 * 1 2 3 27 27 H 1.09001 * 109.47310 * 239.99757 * 2 1 3 28 28 H 1.08997 * 109.47030 * 119.99906 * 2 1 3 29 29 H 0.96997 * 120.00195 * 179.97438 * 8 7 5 30 30 H 1.00900 * 111.00227 * 329.54123 * 13 3 2 31 31 H 1.08995 * 109.46957 * 63.44546 * 14 13 3 32 32 H 1.08998 * 109.47282 * 303.44236 * 14 13 3 33 33 H 1.09003 * 109.47579 * 60.00216 * 15 14 13 34 34 H 1.09007 * 109.47267 * 300.00359 * 15 14 13 35 35 H 1.07998 * 119.99988 * 304.99645 * 16 15 14 36 36 H 1.08009 * 120.00181 * 359.97438 * 17 16 15 37 37 H 1.07995 * 120.07038 * 0.02718 * 19 18 17 38 38 H 1.08002 * 119.92375 * 180.24839 * 20 19 18 39 39 H 1.07999 * 119.85921 * 179.76419 * 21 20 19 40 40 H 1.08007 * 119.92537 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.07613 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5963 1.9847 -0.8351 5 6 3.5405 1.4449 -0.1401 6 1 4.1541 1.8865 0.6312 7 6 4.1300 0.8832 -1.2527 8 7 3.3827 0.3449 -2.1916 9 14 5.9898 0.8867 -1.4265 10 1 6.5947 0.1484 -0.2889 11 1 6.3690 0.2280 -2.7023 12 1 6.4842 2.2869 -1.4270 13 7 1.6648 2.0945 1.2618 14 6 1.5708 3.5509 1.0941 15 6 1.2634 4.2009 2.4446 16 6 1.1663 5.6948 2.2726 17 6 0.0770 6.3383 2.6687 18 6 -0.0158 7.8044 2.5055 19 6 1.0417 8.5142 1.9353 20 6 0.9468 9.8821 1.7814 21 6 -0.1891 10.5512 2.2006 22 6 -1.2389 9.8540 2.7714 23 6 -1.1586 8.4854 2.9266 24 1 -0.3633 -1.0245 -0.0804 25 1 -0.3633 0.4426 0.9273 26 1 -0.3633 0.5818 -0.8471 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7974 -0.0500 -2.9746 30 1 0.8020 1.7155 1.6221 31 1 0.7736 3.7846 0.3886 32 1 2.5172 3.9347 0.7133 33 1 2.0607 3.9672 3.1503 34 1 0.3170 3.8170 2.8256 35 1 1.9841 6.2414 1.8267 36 1 -0.7411 5.7917 3.1144 37 1 1.9306 7.9935 1.6114 38 1 1.7629 10.4321 1.3365 39 1 -0.2569 11.6225 2.0813 40 1 -2.1232 10.3822 3.0963 41 1 -1.9789 7.9421 3.3720 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565169865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:01 Heat of formation + Delta-G solvation = 22.273121 kcal Electronic energy + Delta-G solvation = -18080.826666 eV Core-core repulsion = 15346.000925 eV Total energy + Delta-G solvation = -2734.825742 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.26668 -36.75727 -35.12035 -32.76640 -31.57492 -31.06594 -30.12150 -27.53899 -25.92771 -23.36596 -22.82992 -22.22936 -20.98856 -19.66985 -19.07074 -17.16440 -16.28990 -15.50185 -15.13295 -14.80898 -14.71884 -14.16874 -13.93975 -13.51021 -13.11536 -13.06426 -12.85374 -12.75329 -12.20863 -11.81667 -11.69070 -11.50846 -11.19173 -11.07034 -10.87404 -10.78599 -10.64171 -10.44578 -10.12855 -9.93815 -9.65079 -9.54877 -9.06869 -9.05546 -8.32332 -8.06252 -7.20401 -5.94582 -3.98799 0.88832 1.29491 2.53369 3.35340 3.39413 3.42826 3.84906 4.46175 4.63765 4.73091 4.84218 4.96854 5.15107 5.28501 5.33937 5.34659 5.44199 5.59786 5.74069 5.86217 5.91181 5.98599 6.10458 6.17317 6.17656 6.26780 6.32907 6.39512 6.42884 6.52819 6.65539 6.75069 6.85616 6.87456 6.93262 7.10289 7.21431 7.52073 7.80204 7.93756 8.33091 8.42186 8.78837 9.08881 9.66019 11.10827 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023289 B = 0.003466 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.988190 B = 8075.754423 C = 8904.450426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.493 4.493 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.688 5.688 14 C 0.073 3.927 15 C -0.092 4.092 16 C -0.113 4.113 17 C -0.149 4.149 18 C -0.041 4.041 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.117 4.117 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.041 0.959 29 H 0.260 0.740 30 H 0.316 0.684 31 H 0.014 0.986 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.219 14.822 8.600 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.319 5.319 14 C -0.057 4.057 15 C -0.130 4.130 16 C -0.131 4.131 17 C -0.167 4.167 18 C -0.041 4.041 19 C -0.138 4.138 20 C -0.135 4.135 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.135 4.135 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.133 0.867 31 H 0.033 0.967 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.544 14.737 8.643 18.676 hybrid contribution 0.121 0.089 -0.732 0.747 sum -7.423 14.827 7.911 18.372 Atomic orbital electron populations 1.21878 0.99625 0.99664 0.99557 1.21772 0.91220 1.00386 1.03064 1.19146 0.95449 0.89973 0.84303 0.98129 1.21185 0.91306 1.36527 1.04210 0.92131 1.24967 0.98108 0.95666 0.95862 1.69865 1.34760 1.39515 1.09575 0.86602 0.85771 0.78127 0.77119 1.20298 1.21474 1.20440 1.60696 1.36215 1.02103 1.32927 1.21735 1.00324 0.90049 0.93607 1.20784 1.02207 0.90610 0.99390 1.23538 0.97127 0.96567 0.95879 1.21613 0.99176 0.91660 1.04208 1.19159 0.93983 0.93504 0.97503 1.21393 0.98705 0.94260 0.99469 1.21095 0.98067 0.94453 0.99878 1.21163 0.94137 0.99761 0.99838 1.21068 0.98713 0.94322 0.99697 1.21261 0.97532 0.94340 1.00398 0.94389 0.94622 0.93921 0.88252 0.94048 0.93048 0.86750 0.96750 0.90760 0.89885 0.92091 0.86882 0.86527 0.85617 0.86083 0.86353 0.86215 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.67 37.16 0.36 -2.56 16 2 C -0.13 -2.99 5.36 -26.73 -0.14 -3.13 16 3 C 0.22 5.47 2.02 -68.86 -0.14 5.33 16 4 H 0.00 0.03 7.84 -51.93 -0.41 -0.38 16 5 C -0.49 -13.69 8.59 -34.44 -0.30 -13.98 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.67 11.29 55.43 0.63 -25.04 16 9 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.69 -14.59 6.28 -107.95 -0.68 -15.27 16 14 C 0.07 1.36 5.44 -3.83 -0.02 1.34 16 15 C -0.09 -1.36 5.95 -27.89 -0.17 -1.52 16 16 C -0.11 -1.48 8.94 -36.22 -0.32 -1.81 16 17 C -0.15 -1.83 9.52 -37.57 -0.36 -2.18 16 18 C -0.04 -0.50 5.87 -105.01 -0.62 -1.12 16 19 C -0.12 -1.40 9.40 -39.19 -0.37 -1.77 16 20 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 21 C -0.13 -1.25 10.04 -39.50 -0.40 -1.65 16 22 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 23 C -0.12 -1.25 9.79 -39.20 -0.38 -1.64 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.03 0.62 6.61 -51.93 -0.34 0.27 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.32 6.08 6.61 -39.29 -0.26 5.82 16 31 H 0.01 0.27 8.12 -51.93 -0.42 -0.15 16 32 H 0.07 1.52 7.97 -51.93 -0.41 1.10 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.83 7.81 -51.93 -0.41 0.42 16 35 H 0.11 1.43 6.04 -52.49 -0.32 1.12 16 36 H 0.12 1.30 7.87 -52.48 -0.41 0.89 16 37 H 0.13 1.37 6.17 -52.49 -0.32 1.05 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -29.09 336.24 -10.29 -39.37 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.54 Total: 5.74 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -3.74 Total: -26.42 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.05 Total: -40.31 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.09 -10.29 -39.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565169865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.648 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds