Wall clock time and date at job start Mon Mar 30 2020 07:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46882 * 2 1 4 4 H 1.09005 * 109.46827 * 305.65049 * 3 2 1 5 5 C 1.50701 * 109.46846 * 185.65673 * 3 2 1 6 6 H 1.08000 * 119.99765 * 239.99694 * 5 3 2 7 7 C 1.37875 * 120.00468 * 59.99755 * 5 3 2 8 8 N 1.31518 * 119.99734 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00164 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46964 * 60.00203 * 9 7 5 11 11 H 1.48499 * 109.47045 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46934 * 299.99920 * 9 7 5 13 13 N 1.46897 * 109.47142 * 65.65116 * 3 2 1 14 14 C 1.46899 * 110.99886 * 205.57985 * 13 3 2 15 15 C 1.52998 * 109.46969 * 183.44547 * 14 13 3 16 16 C 1.50698 * 109.47196 * 180.02562 * 15 14 13 17 17 C 1.32564 * 120.00311 * 125.00154 * 16 15 14 18 18 C 1.47813 * 120.00321 * 179.72682 * 17 16 15 19 19 C 1.39537 * 120.13885 * 359.97438 * 18 17 16 20 20 C 1.37978 * 119.85316 * 179.76673 * 19 18 17 21 21 C 1.38337 * 120.14299 * 0.51572 * 20 19 18 22 22 C 1.38351 * 120.28565 * 359.73614 * 21 20 19 23 23 C 1.37967 * 120.14393 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.46764 * 175.51470 * 1 2 3 25 25 H 1.08990 * 109.47281 * 295.51624 * 1 2 3 26 26 H 1.08998 * 109.46706 * 55.52037 * 1 2 3 27 27 H 1.09001 * 109.47310 * 239.99757 * 2 1 3 28 28 H 1.08997 * 109.47030 * 119.99906 * 2 1 3 29 29 H 0.96997 * 120.00195 * 179.97438 * 8 7 5 30 30 H 1.00900 * 111.00227 * 329.54123 * 13 3 2 31 31 H 1.08995 * 109.46957 * 63.44546 * 14 13 3 32 32 H 1.08998 * 109.47282 * 303.44236 * 14 13 3 33 33 H 1.09003 * 109.47579 * 60.00216 * 15 14 13 34 34 H 1.09007 * 109.47267 * 300.00359 * 15 14 13 35 35 H 1.07998 * 119.99988 * 304.99645 * 16 15 14 36 36 H 1.08009 * 120.00181 * 359.97438 * 17 16 15 37 37 H 1.07995 * 120.07038 * 0.02718 * 19 18 17 38 38 H 1.08002 * 119.92375 * 180.24839 * 20 19 18 39 39 H 1.07999 * 119.85921 * 179.76419 * 21 20 19 40 40 H 1.08007 * 119.92537 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.07613 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5963 1.9847 -0.8351 5 6 3.5405 1.4449 -0.1401 6 1 4.1541 1.8865 0.6312 7 6 4.1300 0.8832 -1.2527 8 7 3.3827 0.3449 -2.1916 9 14 5.9898 0.8867 -1.4265 10 1 6.5947 0.1484 -0.2889 11 1 6.3690 0.2280 -2.7023 12 1 6.4842 2.2869 -1.4270 13 7 1.6648 2.0945 1.2618 14 6 1.5708 3.5509 1.0941 15 6 1.2634 4.2009 2.4446 16 6 1.1663 5.6948 2.2726 17 6 0.0770 6.3383 2.6687 18 6 -0.0158 7.8044 2.5055 19 6 1.0417 8.5142 1.9353 20 6 0.9468 9.8821 1.7814 21 6 -0.1891 10.5512 2.2006 22 6 -1.2389 9.8540 2.7714 23 6 -1.1586 8.4854 2.9266 24 1 -0.3633 -1.0245 -0.0804 25 1 -0.3633 0.4426 0.9273 26 1 -0.3633 0.5818 -0.8471 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7974 -0.0500 -2.9746 30 1 0.8020 1.7155 1.6221 31 1 0.7736 3.7846 0.3886 32 1 2.5172 3.9347 0.7133 33 1 2.0607 3.9672 3.1503 34 1 0.3170 3.8170 2.8256 35 1 1.9841 6.2414 1.8267 36 1 -0.7411 5.7917 3.1144 37 1 1.9306 7.9935 1.6114 38 1 1.7629 10.4321 1.3365 39 1 -0.2569 11.6225 2.0813 40 1 -2.1232 10.3822 3.0963 41 1 -1.9789 7.9421 3.3720 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565169865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:00 Heat of formation + Delta-G solvation = 7.467968 kcal Electronic energy + Delta-G solvation = -18081.468666 eV Core-core repulsion = 15346.000925 eV Total energy + Delta-G solvation = -2735.467741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06549 -38.43254 -36.39363 -34.43945 -33.26930 -31.85179 -31.37817 -29.04378 -27.60283 -24.89045 -23.93762 -23.37592 -22.23889 -21.44801 -20.15241 -18.39708 -17.96095 -16.80367 -16.49868 -16.27621 -16.02703 -15.56057 -15.18461 -14.71621 -14.48276 -14.17554 -14.10237 -13.92254 -13.73017 -13.26879 -13.14802 -13.02985 -12.68845 -12.60041 -12.50203 -12.05475 -12.00238 -11.86651 -11.68688 -11.55197 -11.38763 -11.02069 -10.95425 -10.42851 -9.85040 -9.02801 -8.96988 -8.06851 -6.19303 0.02364 0.51215 1.41712 1.43295 1.51123 1.61531 2.43989 3.02918 3.17874 3.54955 3.87900 3.96802 4.11710 4.17721 4.27516 4.38751 4.47360 4.50648 4.55922 4.57185 4.59614 4.69933 4.75694 4.80665 5.04718 5.07601 5.10515 5.17715 5.21575 5.26631 5.37574 5.44378 5.56217 5.59961 5.62437 5.73888 5.75472 5.89850 5.93987 6.12819 6.35993 6.50549 6.94024 7.01939 7.49764 8.96284 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023289 B = 0.003466 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.988190 B = 8075.754423 C = 8904.450426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.224 3.776 4 H -0.034 1.034 5 C -0.515 4.515 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.957 3.043 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.274 1.274 13 N -0.688 5.688 14 C 0.076 3.924 15 C -0.075 4.075 16 C -0.135 4.135 17 C -0.130 4.130 18 C -0.070 4.070 19 C -0.138 4.138 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.125 4.125 23 C -0.123 4.123 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.010 0.990 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.199 16.083 9.772 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.115 3.885 4 H -0.017 1.017 5 C -0.553 4.553 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.561 5.561 9 Si 0.783 3.217 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.320 5.320 14 C -0.053 4.053 15 C -0.113 4.113 16 C -0.154 4.154 17 C -0.148 4.148 18 C -0.070 4.070 19 C -0.156 4.156 20 C -0.146 4.146 21 C -0.148 4.148 22 C -0.142 4.142 23 C -0.141 4.141 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.536 16.005 9.831 20.632 hybrid contribution 0.362 -0.182 -1.083 1.157 sum -8.174 15.823 8.748 19.842 Atomic orbital electron populations 1.21748 0.96205 1.01194 1.00495 1.21602 0.94308 0.98869 1.01268 1.18933 0.94069 0.90754 0.84702 1.01692 1.21467 0.92881 1.36734 1.04260 0.93213 1.25710 1.02449 0.95283 0.95544 1.69999 1.36363 1.39865 1.09856 0.85633 0.80589 0.78257 0.77264 1.19730 1.20861 1.19971 1.60584 1.37177 1.03428 1.30806 1.21712 0.98839 0.88700 0.96089 1.20568 1.02769 0.91362 0.96555 1.23355 0.98081 0.95631 0.98315 1.21796 0.98676 0.92128 1.02237 1.19309 0.95049 0.93445 0.99153 1.21559 0.98819 0.95186 1.00016 1.21381 0.99146 0.94096 0.99989 1.21554 0.93549 1.01169 0.98566 1.21444 0.99663 0.94083 0.99055 1.21545 0.97419 0.95136 0.99997 0.92284 0.92204 0.94685 0.91432 0.94330 0.93043 0.85243 0.97218 0.93350 0.90298 0.90457 0.87160 0.85171 0.85967 0.84469 0.83803 0.83578 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 9.67 71.98 0.70 -4.56 16 2 C -0.12 -5.84 5.36 30.60 0.16 -5.67 16 3 C 0.22 11.49 2.02 44.17 0.09 11.58 16 4 H -0.03 -1.98 7.84 -2.38 -0.02 -2.00 16 5 C -0.51 -29.31 8.59 25.60 0.22 -29.09 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 7 C 0.01 0.46 5.29 84.65 0.45 0.91 16 8 N -0.92 -53.84 11.29 21.45 0.24 -53.60 16 9 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 N -0.69 -29.36 6.28 -495.46 -3.11 -32.47 16 14 C 0.08 2.91 5.44 86.30 0.47 3.38 16 15 C -0.08 -2.17 5.95 29.85 0.18 -1.99 16 16 C -0.14 -3.55 8.94 24.53 0.22 -3.33 16 17 C -0.13 -3.07 9.52 23.65 0.23 -2.85 16 18 C -0.07 -1.61 5.87 -20.12 -0.12 -1.73 16 19 C -0.14 -3.16 9.40 22.52 0.21 -2.95 16 20 C -0.13 -2.46 10.03 22.23 0.22 -2.24 16 21 C -0.13 -2.17 10.04 22.32 0.22 -1.94 16 22 C -0.12 -2.06 10.03 22.23 0.22 -1.84 16 23 C -0.12 -2.38 9.79 22.52 0.22 -2.16 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 1.96 6.61 -2.39 -0.02 1.94 16 26 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 3.68 5.94 -2.39 -0.01 3.67 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.33 12.37 6.61 -89.69 -0.59 11.77 16 31 H 0.01 0.38 8.12 -2.39 -0.02 0.36 16 32 H 0.05 2.07 7.97 -2.39 -0.02 2.05 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.08 1.97 7.81 -2.38 -0.02 1.95 16 35 H 0.11 2.90 6.04 -2.91 -0.02 2.89 16 36 H 0.13 2.64 7.87 -2.91 -0.02 2.62 16 37 H 0.12 2.75 6.17 -2.91 -0.02 2.73 16 38 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 41 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -63.53 336.24 3.25 -60.28 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.40 Total: 23.48 kcal Atomic # 6 Polarization: -48.17 SS G_CDS: 3.69 Total: -44.48 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -2.87 Total: -86.07 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.53 3.25 -60.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565169865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.748 kcal (2) G-P(sol) polarization free energy of solvation -63.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds