Wall clock time and date at job start Mon Mar 30 2020 07:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46850 * 2 1 4 4 C 1.52997 * 109.47153 * 119.99708 * 2 1 3 5 5 H 1.09004 * 112.85448 * 288.81005 * 4 2 1 6 6 C 1.53778 * 113.61524 * 157.49751 * 4 2 1 7 7 C 1.53787 * 87.08157 * 220.02146 * 6 4 2 8 8 C 1.53775 * 87.08112 * 25.43068 * 7 6 4 9 9 H 1.09000 * 113.69536 * 220.00544 * 8 7 6 10 10 N 1.46504 * 113.61242 * 89.11738 * 8 7 6 11 11 C 1.38852 * 120.00029 * 107.50571 * 10 8 7 12 12 C 1.39572 * 119.84161 * 180.02562 * 11 10 8 13 13 C 1.36340 * 120.16222 * 179.97438 * 12 11 10 14 14 C 1.40888 * 119.83378 * 359.97438 * 13 12 11 15 15 C 1.41136 * 120.15399 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99921 * 334.76468 * 15 14 13 17 17 C 1.39862 * 120.00295 * 154.76855 * 15 14 13 18 18 N 1.30905 * 119.99781 * 334.23709 * 17 15 14 19 19 Si 1.86797 * 120.00298 * 154.23622 * 17 15 14 20 20 H 1.48503 * 109.47183 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47231 * 299.99888 * 19 17 15 22 22 H 1.48499 * 109.47296 * 60.00054 * 19 17 15 23 23 C 1.40884 * 119.68921 * 0.25117 * 14 13 12 24 24 C 1.36342 * 119.83720 * 359.47065 * 23 14 13 25 25 H 1.08999 * 109.47203 * 300.00283 * 1 2 3 26 26 H 1.08998 * 109.47494 * 59.99893 * 1 2 3 27 27 H 1.08995 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46845 * 240.00081 * 2 1 3 29 29 H 1.08997 * 109.46950 * 299.99557 * 3 2 1 30 30 H 1.08996 * 109.47330 * 60.00378 * 3 2 1 31 31 H 1.09002 * 109.46554 * 179.97438 * 3 2 1 32 32 H 1.08999 * 113.61418 * 334.56969 * 6 4 2 33 33 H 1.08997 * 113.61401 * 105.47461 * 6 4 2 34 34 H 1.08996 * 113.61504 * 270.88105 * 7 6 4 35 35 H 1.08994 * 113.61187 * 139.98249 * 7 6 4 36 36 H 0.97003 * 119.99600 * 287.49812 * 10 8 7 37 37 H 1.08001 * 119.92159 * 359.97110 * 12 11 10 38 38 H 1.07996 * 120.08360 * 180.02562 * 13 12 11 39 39 H 0.97003 * 120.00327 * 354.24659 * 18 17 15 40 40 H 1.08008 * 120.07915 * 179.72322 * 23 14 13 41 41 H 1.08001 * 119.92110 * 180.27345 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.8758 -0.1512 2.1638 6 6 3.4726 -1.2616 1.1068 7 6 2.9921 -2.5117 1.8628 8 6 1.5811 -2.1858 1.3456 9 1 0.7955 -2.3497 2.0832 10 7 1.2775 -2.7922 0.0470 11 6 0.3948 -3.8612 -0.0307 12 6 0.1084 -4.4368 -1.2695 13 6 -0.7570 -5.4871 -1.3533 14 6 -1.3621 -5.9915 -0.1853 15 6 -2.2594 -7.0781 -0.2642 16 1 -2.7984 -7.2678 -1.1807 17 6 -2.4505 -7.9092 0.8443 18 7 -1.5049 -8.0318 1.7412 19 14 -4.0551 -8.8443 1.0451 20 1 -4.0070 -9.6476 2.2931 21 1 -5.1831 -7.8814 1.1200 22 1 -4.2510 -9.7467 -0.1179 23 6 -1.0719 -5.4024 1.0612 24 6 -0.2002 -4.3563 1.1306 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1300 1.4425 0.0005 32 1 3.7639 -1.4602 0.0754 33 1 4.2151 -0.6797 1.6529 34 1 3.0896 -2.4316 2.9454 35 1 3.3975 -3.4433 1.4681 36 1 1.6931 -2.4468 -0.7586 37 1 0.5733 -4.0493 -2.1640 38 1 -0.9774 -5.9317 -2.3125 39 1 -0.6417 -7.6137 1.5962 40 1 -1.5357 -5.7812 1.9600 41 1 0.0266 -3.9066 2.0859 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567428626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:37 Heat of formation + Delta-G solvation = 22.815636 kcal Electronic energy + Delta-G solvation = -19312.736663 eV Core-core repulsion = 16577.934447 eV Total energy + Delta-G solvation = -2734.802216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.86699 -37.66273 -34.56985 -33.89440 -32.11545 -29.60796 -28.20340 -27.05126 -25.30006 -24.88256 -23.90382 -21.23533 -20.59953 -20.45853 -18.42090 -17.77702 -16.62487 -15.52949 -14.75247 -14.51378 -14.24651 -14.10261 -13.72666 -13.49404 -13.13054 -12.80832 -12.35420 -12.23035 -12.12829 -12.08410 -11.94517 -11.67644 -11.32257 -11.14829 -10.93393 -10.86361 -10.75838 -10.50622 -10.31948 -10.00743 -9.84818 -9.55083 -9.35165 -9.02966 -8.53085 -7.69106 -7.02061 -6.51180 -4.07698 2.92211 2.95393 3.24764 3.38356 3.45267 4.15798 4.20178 4.59676 4.69050 4.77507 4.82946 5.08338 5.16483 5.31543 5.42817 5.59707 5.67039 5.68749 5.77774 5.82723 5.88179 5.92472 6.00380 6.12067 6.15414 6.23565 6.24177 6.31050 6.32655 6.51395 6.54172 6.79051 6.86172 7.11021 7.42537 7.49927 7.65245 7.91660 7.97536 8.24505 8.38200 8.50289 8.70033 8.97319 9.10770 10.26461 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.036093 B = 0.004404 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.578230 B = 6355.693636 C = 6585.953535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.145 4.145 4 C -0.117 4.117 5 H 0.091 0.909 6 C -0.132 4.132 7 C -0.166 4.166 8 C 0.152 3.848 9 H 0.083 0.917 10 N -0.735 5.735 11 C 0.083 3.917 12 C -0.145 4.145 13 C -0.191 4.191 14 C 0.067 3.933 15 C -0.536 4.536 16 H 0.069 0.931 17 C 0.039 3.961 18 N -0.813 5.813 19 Si 1.062 2.938 20 H -0.276 1.276 21 H -0.277 1.277 22 H -0.279 1.279 23 C -0.181 4.181 24 C -0.144 4.144 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.384 0.616 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.296 0.704 40 H 0.105 0.895 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.280 12.940 -0.221 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 C -0.202 4.202 4 C -0.136 4.136 5 H 0.109 0.891 6 C -0.170 4.170 7 C -0.206 4.206 8 C 0.044 3.956 9 H 0.101 0.899 10 N -0.369 5.369 11 C -0.013 4.013 12 C -0.167 4.167 13 C -0.211 4.211 14 C 0.064 3.936 15 C -0.565 4.565 16 H 0.087 0.913 17 C -0.180 4.180 18 N -0.438 5.438 19 Si 0.886 3.114 20 H -0.201 1.201 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.200 4.200 24 C -0.166 4.166 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.218 0.782 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.448 11.903 1.014 13.129 hybrid contribution 1.154 1.205 -1.340 2.140 sum 6.602 13.107 -0.327 14.680 Atomic orbital electron populations 1.21849 0.94863 1.03300 1.00635 1.20926 0.96140 0.95189 0.97486 1.21828 1.00630 0.96434 1.01327 1.23068 0.96048 0.95971 0.98521 0.89116 1.22893 0.96096 0.97487 1.00497 1.23504 0.99151 0.98275 0.99687 1.21476 0.95221 0.91330 0.87620 0.89889 1.43530 1.51362 1.36383 1.05625 1.17232 0.97642 0.92810 0.93631 1.19861 1.02930 0.99833 0.94115 1.20509 1.02030 1.00824 0.97757 1.17559 0.91896 0.93162 0.90978 1.20305 1.23487 1.11568 1.01158 0.91299 1.26825 1.03287 0.96129 0.91791 1.70483 1.04523 1.33941 1.34814 0.83693 0.74275 0.76347 0.77043 1.20119 1.20262 1.20425 1.20766 1.02656 0.98488 0.98137 1.20046 1.01689 0.99800 0.95085 0.93409 0.93499 0.90830 0.91589 0.93100 0.92983 0.93031 0.90615 0.92166 0.90364 0.91187 0.78192 0.89537 0.89037 0.89093 0.87745 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.95 37.16 0.33 -1.55 16 2 C -0.08 -0.89 2.16 -90.62 -0.20 -1.08 16 3 C -0.14 -1.39 9.19 37.16 0.34 -1.04 16 4 C -0.12 -1.35 3.09 -89.81 -0.28 -1.63 16 5 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 6 C -0.13 -1.48 7.50 -25.92 -0.19 -1.68 16 7 C -0.17 -2.19 7.88 -25.92 -0.20 -2.39 16 8 C 0.15 2.20 3.30 -67.12 -0.22 1.98 16 9 H 0.08 1.32 6.10 -51.93 -0.32 1.00 16 10 N -0.74 -12.16 3.84 -51.25 -0.20 -12.36 16 11 C 0.08 1.75 6.67 -83.69 -0.56 1.20 16 12 C -0.15 -3.22 9.82 -39.77 -0.39 -3.61 16 13 C -0.19 -4.74 9.74 -39.26 -0.38 -5.12 16 14 C 0.07 1.82 5.30 -106.79 -0.57 1.25 16 15 C -0.54 -14.74 8.96 -37.88 -0.34 -15.08 16 16 H 0.07 1.86 7.96 -52.49 -0.42 1.44 16 17 C 0.04 1.04 4.92 -17.34 -0.09 0.95 16 18 N -0.81 -22.37 12.32 55.54 0.68 -21.69 16 19 Si 1.06 22.46 30.00 -169.99 -5.10 17.36 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.18 -4.67 7.90 -39.26 -0.31 -4.98 16 24 C -0.14 -3.30 9.19 -39.77 -0.37 -3.67 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.13 6.57 -51.93 -0.34 0.79 16 28 H 0.07 0.78 6.63 -51.93 -0.34 0.43 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.38 5.86 7.17 -40.82 -0.29 5.57 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 39 H 0.30 8.36 6.71 -40.82 -0.27 8.09 16 40 H 0.10 2.82 6.50 -52.48 -0.34 2.48 16 41 H 0.09 1.91 6.01 -52.49 -0.32 1.60 16 LS Contribution 323.05 15.07 4.87 4.87 Total: -1.00 -27.32 323.05 -9.66 -36.98 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.50 Total: 11.28 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: -3.42 Total: -36.45 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.49 Total: -34.05 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.10 Total: 17.36 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.32 -9.66 -36.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567428626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.799 kcal (2) G-P(sol) polarization free energy of solvation -27.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds