Wall clock time and date at job start Mon Mar 30 2020 07:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46850 * 2 1 4 4 C 1.52997 * 109.47153 * 119.99708 * 2 1 3 5 5 H 1.09004 * 112.85448 * 288.81005 * 4 2 1 6 6 C 1.53778 * 113.61524 * 157.49751 * 4 2 1 7 7 C 1.53787 * 87.08157 * 220.02146 * 6 4 2 8 8 C 1.53775 * 87.08112 * 25.43068 * 7 6 4 9 9 H 1.09000 * 113.69536 * 220.00544 * 8 7 6 10 10 N 1.46504 * 113.61242 * 89.11738 * 8 7 6 11 11 C 1.38852 * 120.00029 * 107.50571 * 10 8 7 12 12 C 1.39572 * 119.84161 * 180.02562 * 11 10 8 13 13 C 1.36340 * 120.16222 * 179.97438 * 12 11 10 14 14 C 1.40888 * 119.83378 * 359.97438 * 13 12 11 15 15 C 1.41136 * 120.15399 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99921 * 334.76468 * 15 14 13 17 17 C 1.39862 * 120.00295 * 154.76855 * 15 14 13 18 18 N 1.30905 * 119.99781 * 334.23709 * 17 15 14 19 19 Si 1.86797 * 120.00298 * 154.23622 * 17 15 14 20 20 H 1.48503 * 109.47183 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47231 * 299.99888 * 19 17 15 22 22 H 1.48499 * 109.47296 * 60.00054 * 19 17 15 23 23 C 1.40884 * 119.68921 * 0.25117 * 14 13 12 24 24 C 1.36342 * 119.83720 * 359.47065 * 23 14 13 25 25 H 1.08999 * 109.47203 * 300.00283 * 1 2 3 26 26 H 1.08998 * 109.47494 * 59.99893 * 1 2 3 27 27 H 1.08995 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46845 * 240.00081 * 2 1 3 29 29 H 1.08997 * 109.46950 * 299.99557 * 3 2 1 30 30 H 1.08996 * 109.47330 * 60.00378 * 3 2 1 31 31 H 1.09002 * 109.46554 * 179.97438 * 3 2 1 32 32 H 1.08999 * 113.61418 * 334.56969 * 6 4 2 33 33 H 1.08997 * 113.61401 * 105.47461 * 6 4 2 34 34 H 1.08996 * 113.61504 * 270.88105 * 7 6 4 35 35 H 1.08994 * 113.61187 * 139.98249 * 7 6 4 36 36 H 0.97003 * 119.99600 * 287.49812 * 10 8 7 37 37 H 1.08001 * 119.92159 * 359.97110 * 12 11 10 38 38 H 1.07996 * 120.08360 * 180.02562 * 13 12 11 39 39 H 0.97003 * 120.00327 * 354.24659 * 18 17 15 40 40 H 1.08008 * 120.07915 * 179.72322 * 23 14 13 41 41 H 1.08001 * 119.92110 * 180.27345 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.8758 -0.1512 2.1638 6 6 3.4726 -1.2616 1.1068 7 6 2.9921 -2.5117 1.8628 8 6 1.5811 -2.1858 1.3456 9 1 0.7955 -2.3497 2.0832 10 7 1.2775 -2.7922 0.0470 11 6 0.3948 -3.8612 -0.0307 12 6 0.1084 -4.4368 -1.2695 13 6 -0.7570 -5.4871 -1.3533 14 6 -1.3621 -5.9915 -0.1853 15 6 -2.2594 -7.0781 -0.2642 16 1 -2.7984 -7.2678 -1.1807 17 6 -2.4505 -7.9092 0.8443 18 7 -1.5049 -8.0318 1.7412 19 14 -4.0551 -8.8443 1.0451 20 1 -4.0070 -9.6476 2.2931 21 1 -5.1831 -7.8814 1.1200 22 1 -4.2510 -9.7467 -0.1179 23 6 -1.0719 -5.4024 1.0612 24 6 -0.2002 -4.3563 1.1306 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1300 1.4425 0.0005 32 1 3.7639 -1.4602 0.0754 33 1 4.2151 -0.6797 1.6529 34 1 3.0896 -2.4316 2.9454 35 1 3.3975 -3.4433 1.4681 36 1 1.6931 -2.4468 -0.7586 37 1 0.5733 -4.0493 -2.1640 38 1 -0.9774 -5.9317 -2.3125 39 1 -0.6417 -7.6137 1.5962 40 1 -1.5357 -5.7812 1.9600 41 1 0.0266 -3.9066 2.0859 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567428626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:36 Heat of formation + Delta-G solvation = 10.494740 kcal Electronic energy + Delta-G solvation = -19313.270937 eV Core-core repulsion = 16577.934447 eV Total energy + Delta-G solvation = -2735.336490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05374 -39.43377 -36.23791 -35.02454 -33.78161 -31.51221 -29.98079 -28.00873 -26.45100 -26.25869 -25.43654 -22.99624 -22.36053 -21.44949 -19.80382 -19.58313 -18.12451 -16.83073 -16.27737 -15.97512 -15.75797 -15.30775 -15.24185 -14.74796 -14.64516 -14.12089 -13.91309 -13.76936 -13.72433 -13.32201 -13.04810 -12.92578 -12.85702 -12.63444 -12.51711 -12.02248 -11.94804 -11.81190 -11.55137 -11.43101 -11.26299 -11.11036 -10.84234 -10.76562 -10.28380 -9.62156 -9.06026 -8.26869 -6.09330 0.97702 1.09163 1.51941 1.68073 1.81227 2.40316 2.77748 2.81146 3.58352 3.64589 3.79392 3.86278 4.07827 4.22042 4.26486 4.35634 4.42264 4.53524 4.66457 4.76803 4.82833 4.84171 4.87400 4.98723 5.02309 5.07559 5.09153 5.15245 5.19029 5.29708 5.33796 5.34729 5.51758 5.51824 5.54638 5.67485 5.75740 5.90774 5.94142 6.32555 6.40785 6.74130 6.98545 7.10603 7.26067 8.19941 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.036093 B = 0.004404 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.578230 B = 6355.693636 C = 6585.953535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.140 4.140 4 C -0.102 4.102 5 H 0.105 0.895 6 C -0.119 4.119 7 C -0.165 4.165 8 C 0.132 3.868 9 H 0.067 0.933 10 N -0.721 5.721 11 C 0.116 3.884 12 C -0.154 4.154 13 C -0.198 4.198 14 C 0.029 3.971 15 C -0.575 4.575 16 H 0.061 0.939 17 C 0.001 3.999 18 N -0.837 5.837 19 Si 1.114 2.886 20 H -0.273 1.273 21 H -0.267 1.267 22 H -0.261 1.261 23 C -0.191 4.191 24 C -0.158 4.158 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.396 0.604 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.278 0.722 40 H 0.083 0.917 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.532 15.277 -0.449 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 C -0.197 4.197 4 C -0.121 4.121 5 H 0.123 0.877 6 C -0.157 4.157 7 C -0.205 4.205 8 C 0.025 3.975 9 H 0.085 0.915 10 N -0.354 5.354 11 C 0.017 3.983 12 C -0.176 4.176 13 C -0.218 4.218 14 C 0.026 3.974 15 C -0.605 4.605 16 H 0.080 0.920 17 C -0.212 4.212 18 N -0.462 5.462 19 Si 0.932 3.068 20 H -0.197 1.197 21 H -0.192 1.192 22 H -0.185 1.185 23 C -0.211 4.211 24 C -0.180 4.180 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.231 0.769 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.747 14.292 0.773 15.824 hybrid contribution 0.927 0.715 -1.313 1.759 sum 7.673 15.008 -0.540 16.864 Atomic orbital electron populations 1.21808 0.96014 1.01340 1.01245 1.20914 0.95020 0.96569 0.97053 1.21775 1.01241 0.94843 1.01880 1.23005 0.95895 0.93797 0.99426 0.87705 1.22839 0.96195 0.96121 1.00517 1.23491 0.97682 0.98520 1.00791 1.21752 0.95666 0.93961 0.86143 0.91505 1.43515 1.49829 1.34743 1.07352 1.17329 0.95998 0.92332 0.92659 1.20148 1.02480 0.99235 0.95742 1.20710 1.02254 1.01507 0.97287 1.17848 0.93319 0.94139 0.92139 1.20486 1.25235 1.13014 1.01779 0.92045 1.28230 1.05582 0.96310 0.91069 1.70606 1.04311 1.35489 1.35832 0.83048 0.70473 0.75613 0.77660 1.19742 1.19158 1.18500 1.20688 1.03689 0.99544 0.97146 1.20203 1.01615 0.99449 0.96709 0.92901 0.92922 0.93926 0.91902 0.92659 0.92434 0.92000 0.90478 0.90022 0.89006 0.93066 0.76869 0.86309 0.88727 0.91023 0.89874 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.95 71.98 0.64 -2.73 16 2 C -0.08 -1.48 2.16 -10.79 -0.02 -1.51 16 3 C -0.14 -2.13 9.19 71.98 0.66 -1.47 16 4 C -0.10 -2.02 3.09 -10.27 -0.03 -2.05 16 5 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 6 C -0.12 -2.21 7.50 31.12 0.23 -1.98 16 7 C -0.17 -3.93 7.88 31.12 0.25 -3.68 16 8 C 0.13 3.55 3.30 45.52 0.15 3.70 16 9 H 0.07 2.04 6.10 -2.39 -0.01 2.02 16 10 N -0.72 -22.46 3.84 -316.05 -1.21 -23.68 16 11 C 0.12 4.79 6.67 38.67 0.26 5.05 16 12 C -0.15 -6.66 9.82 22.15 0.22 -6.44 16 13 C -0.20 -9.96 9.74 22.48 0.22 -9.74 16 14 C 0.03 1.61 5.30 -21.27 -0.11 1.50 16 15 C -0.57 -33.12 8.96 23.37 0.21 -32.91 16 16 H 0.06 3.48 7.96 -2.91 -0.02 3.45 16 17 C 0.00 0.07 4.92 85.22 0.42 0.49 16 18 N -0.84 -48.20 12.32 21.82 0.27 -47.93 16 19 Si 1.11 46.30 30.00 68.60 2.06 48.36 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 23 C -0.19 -10.28 7.90 22.48 0.18 -10.10 16 24 C -0.16 -7.29 9.19 22.15 0.20 -7.09 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.04 1.24 6.57 -2.39 -0.02 1.22 16 28 H 0.06 1.27 6.63 -2.39 -0.02 1.25 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.45 7.96 -2.39 -0.02 1.43 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.40 10.94 7.17 -92.71 -0.66 10.28 16 37 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 38 H 0.09 4.59 8.06 -2.91 -0.02 4.56 16 39 H 0.28 16.66 6.71 -92.71 -0.62 16.04 16 40 H 0.08 4.76 6.50 -2.91 -0.02 4.74 16 41 H 0.11 4.55 6.01 -2.91 -0.02 4.54 16 Total: -1.00 -61.82 323.05 5.07 -56.75 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: 0.49 Total: 35.48 kcal Atomic # 6 Polarization: -72.45 SS G_CDS: 3.47 Total: -68.98 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -0.95 Total: -71.61 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.06 Total: 48.36 kcal Total: -61.82 5.07 -56.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567428626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.240 kcal (2) G-P(sol) polarization free energy of solvation -61.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds