Wall clock time and date at job start Mon Mar 30 2020 07:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.34478 * 2 1 4 4 C 1.51373 * 110.30213 * 122.12075 * 2 1 3 5 5 C 1.38494 * 130.38974 * 281.71418 * 4 2 1 6 6 C 1.38105 * 120.21449 * 180.02562 * 5 4 2 7 7 C 1.38258 * 119.93473 * 359.97438 * 6 5 4 8 8 C 1.38108 * 119.93552 * 359.95833 * 7 6 5 9 9 C 1.38220 * 109.75493 * 101.72846 * 4 2 1 10 10 C 1.51360 * 109.76271 * 0.02562 * 9 4 2 11 11 C 1.54347 * 110.30657 * 237.86683 * 2 1 3 12 12 H 1.08992 * 110.82106 * 149.00481 * 11 2 1 13 13 N 1.46906 * 110.81753 * 25.65358 * 11 2 1 14 14 C 1.46898 * 110.99581 * 155.00114 * 13 11 2 15 15 C 1.53005 * 109.46991 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.46991 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46849 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99974 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99754 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99831 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00117 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47112 * 90.00802 * 21 19 17 23 23 H 1.48503 * 109.47184 * 210.00321 * 21 19 17 24 24 H 1.48502 * 109.47548 * 330.00477 * 21 19 17 25 25 H 1.09002 * 109.46690 * 182.13031 * 1 2 3 26 26 H 1.08995 * 109.46832 * 302.12995 * 1 2 3 27 27 H 1.09001 * 109.46925 * 62.13439 * 1 2 3 28 28 H 1.07992 * 119.89470 * 0.02680 * 5 4 2 29 29 H 1.07998 * 120.03582 * 179.97438 * 6 5 4 30 30 H 1.08003 * 120.03347 * 179.97438 * 7 6 5 31 31 H 1.07989 * 119.89298 * 179.97438 * 8 7 6 32 32 H 1.09000 * 110.30364 * 258.25820 * 10 9 4 33 33 H 1.09003 * 110.30584 * 136.10053 * 10 9 4 34 34 H 1.00891 * 110.99999 * 31.04791 * 13 11 2 35 35 H 1.09001 * 109.46978 * 299.99691 * 14 13 11 36 36 H 1.08999 * 109.47495 * 59.99857 * 14 13 11 37 37 H 1.09001 * 109.47026 * 299.99684 * 15 14 13 38 38 H 1.08999 * 109.47098 * 59.99638 * 15 14 13 39 39 H 1.09001 * 109.47168 * 299.99830 * 16 15 14 40 40 H 1.08999 * 109.47306 * 59.99997 * 16 15 14 41 41 H 0.97000 * 120.00160 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0553 -0.7549 1.2024 5 6 2.1658 -0.3671 2.5273 6 6 2.6844 -1.2380 3.4654 7 6 3.0943 -2.5014 3.0816 8 6 2.9836 -2.8904 1.7611 9 6 2.4654 -2.0178 0.8185 10 6 2.2444 -2.1978 -0.6680 11 6 2.0657 -0.7699 -1.2258 12 1 3.0191 -0.3577 -1.5559 13 7 1.0860 -0.7554 -2.3204 14 6 1.7470 -0.9295 -3.6207 15 6 0.6969 -0.9097 -4.7333 16 6 1.3853 -1.0904 -6.0876 17 6 0.3511 -1.0703 -7.1835 18 1 -0.6928 -0.9411 -6.9385 19 6 0.7375 -1.2168 -8.4989 20 7 -0.1650 -1.1988 -9.4553 21 14 2.5431 -1.4395 -8.9226 22 1 2.8766 -2.8865 -8.9231 23 1 2.8098 -0.8697 -10.2678 24 1 3.3784 -0.7393 -7.9140 25 1 -0.3633 -1.0270 0.0382 26 1 -0.3633 0.5465 0.8702 27 1 -0.3633 0.4803 -0.9085 28 1 1.8454 0.6194 2.8280 29 1 2.7696 -0.9325 4.4977 30 1 3.5005 -3.1836 3.8138 31 1 3.3044 -3.8772 1.4620 32 1 1.3465 -2.7889 -0.8480 33 1 3.1111 -2.6765 -1.1240 34 1 0.5379 0.0915 -2.3039 35 1 2.4587 -0.1190 -3.7779 36 1 2.2738 -1.8836 -3.6357 37 1 -0.0145 -1.7205 -4.5759 38 1 0.1697 0.0442 -4.7184 39 1 2.0965 -0.2794 -6.2448 40 1 1.9128 -2.0442 -6.1027 41 1 0.1069 -1.3015 -10.3807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595705298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:55 Heat of formation + Delta-G solvation = 9.483323 kcal Electronic energy + Delta-G solvation = -18546.068820 eV Core-core repulsion = 15810.688471 eV Total energy + Delta-G solvation = -2735.380349 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.53249 -37.37656 -34.95120 -32.93944 -32.07881 -31.14832 -29.67583 -28.07887 -26.06074 -24.90556 -22.55234 -21.98712 -20.89851 -20.23179 -19.55619 -16.75285 -16.44150 -16.13044 -15.83117 -15.16615 -14.75122 -14.28041 -14.05490 -13.70837 -13.30365 -13.04252 -12.96123 -12.69882 -12.47711 -12.42878 -12.07819 -11.88667 -11.54920 -11.26776 -11.12575 -10.89809 -10.78506 -10.75698 -10.64869 -9.93851 -9.71481 -9.55898 -9.15327 -8.97063 -8.64913 -8.51829 -8.27885 -6.02172 -3.99828 1.20500 1.23260 3.31919 3.39067 3.42733 3.60099 4.18174 4.21024 4.46959 4.49150 4.82459 4.84039 4.88203 5.03237 5.23114 5.31297 5.31860 5.36670 5.48690 5.49446 5.62922 5.65860 5.73490 5.81036 5.86587 5.90229 6.02537 6.14498 6.19595 6.24714 6.27876 6.33751 6.54774 6.57217 6.60560 6.84572 6.93759 7.23397 7.36272 7.45592 7.56703 7.82506 8.57130 9.03495 9.60557 11.11457 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.043293 B = 0.003289 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.595211 B = 8510.664773 C = 8877.680310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.057 4.057 3 H 0.076 0.924 4 C -0.089 4.089 5 C -0.106 4.106 6 C -0.126 4.126 7 C -0.122 4.122 8 C -0.110 4.110 9 C -0.087 4.087 10 C -0.074 4.074 11 C 0.088 3.912 12 H 0.056 0.944 13 N -0.679 5.679 14 C 0.055 3.945 15 C -0.099 4.099 16 C -0.013 4.013 17 C -0.519 4.519 18 H 0.072 0.928 19 C 0.065 3.935 20 N -0.905 5.905 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.343 0.657 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.013 0.987 40 H 0.011 0.989 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.514 0.719 25.551 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.076 4.076 3 H 0.095 0.905 4 C -0.089 4.089 5 C -0.124 4.124 6 C -0.144 4.144 7 C -0.140 4.140 8 C -0.129 4.129 9 C -0.087 4.087 10 C -0.111 4.111 11 C -0.022 4.022 12 H 0.074 0.926 13 N -0.312 5.312 14 C -0.074 4.074 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.557 4.557 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.544 5.544 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.191 1.191 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.164 0.836 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.031 0.969 40 H 0.029 0.971 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.328 0.056 25.398 26.174 hybrid contribution 1.411 0.685 -0.425 1.625 sum 7.738 0.741 24.973 26.155 Atomic orbital electron populations 1.21630 0.92961 1.02887 1.01418 1.20815 0.96955 0.98454 0.91362 0.90529 1.20503 0.98700 0.95618 0.94079 1.20605 1.00139 0.99723 0.91947 1.20996 1.00063 0.94196 0.99151 1.21020 1.00640 0.96535 0.95771 1.20651 1.00189 0.99373 0.92639 1.20679 0.97639 0.94312 0.96081 1.21125 1.02712 0.97791 0.89520 1.22170 0.94456 0.94881 0.90723 0.92581 1.60730 1.24229 1.43764 1.02502 1.22223 0.96799 1.00170 0.88176 1.21439 0.97170 1.01428 0.93669 1.19542 0.96629 0.96020 0.92893 1.21159 0.94880 1.49557 0.90061 0.91023 1.25045 0.97367 0.94739 0.96469 1.69919 1.33423 1.51002 1.00075 0.86764 0.86123 0.78676 0.77609 1.20303 1.21455 1.19098 0.91700 0.93028 0.91540 0.86471 0.86123 0.86094 0.86296 0.88742 0.91090 0.83634 0.95730 0.91480 0.91923 0.93061 0.96890 0.97067 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.56 37.16 0.32 -1.01 16 2 C -0.06 -0.60 3.34 -90.73 -0.30 -0.90 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.09 -0.97 5.45 -104.20 -0.57 -1.54 16 5 C -0.11 -1.04 10.04 -39.54 -0.40 -1.44 16 6 C -0.13 -1.13 10.05 -39.62 -0.40 -1.53 16 7 C -0.12 -1.11 10.05 -39.62 -0.40 -1.50 16 8 C -0.11 -1.13 10.04 -39.53 -0.40 -1.53 16 9 C -0.09 -0.99 6.14 -104.21 -0.64 -1.63 16 10 C -0.07 -0.87 6.49 -26.86 -0.17 -1.04 16 11 C 0.09 1.05 3.25 -66.30 -0.22 0.84 16 12 H 0.06 0.69 7.83 -51.93 -0.41 0.29 16 13 N -0.68 -9.14 5.68 -105.24 -0.60 -9.74 16 14 C 0.05 0.88 5.55 -3.82 -0.02 0.86 16 15 C -0.10 -1.95 5.41 -26.73 -0.14 -2.10 16 16 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 17 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 18 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 21 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.27 -6.37 6.54 56.52 0.37 -6.01 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.65 6.22 -51.93 -0.32 0.33 16 28 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.09 1.19 8.08 -51.93 -0.42 0.77 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.34 4.32 6.39 -39.30 -0.25 4.07 16 35 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 40 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -30.89 328.27 -10.25 -41.14 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.82 Total: 0.28 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -3.88 Total: -26.45 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.18 Total: -37.23 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.89 -10.25 -41.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595705298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.628 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds