Wall clock time and date at job start Mon Mar 30 2020 07:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46939 * 2 1 4 4 H 1.08999 * 109.47471 * 302.05413 * 3 2 1 5 5 C 1.52993 * 109.47255 * 182.05365 * 3 2 1 6 6 N 1.46902 * 109.47329 * 62.04990 * 3 2 1 7 7 C 1.47165 * 111.00177 * 185.51479 * 6 3 2 8 8 C 1.52898 * 108.46254 * 165.54339 * 7 6 3 9 9 C 1.50678 * 109.99061 * 50.24811 * 8 7 6 10 10 C 1.41126 * 118.49948 * 163.30273 * 9 8 7 11 11 C 1.41391 * 120.07682 * 359.41428 * 10 9 8 12 12 H 1.07994 * 120.00556 * 334.17672 * 11 10 9 13 13 C 1.39951 * 119.99332 * 153.89781 * 11 10 9 14 14 N 1.30818 * 120.00404 * 333.14989 * 13 11 10 15 15 Si 1.86799 * 119.99814 * 153.15296 * 13 11 10 16 16 H 1.48507 * 109.47148 * 94.98128 * 15 13 11 17 17 H 1.48494 * 109.47356 * 214.98365 * 15 13 11 18 18 H 1.48501 * 109.47228 * 334.98488 * 15 13 11 19 19 C 1.40529 * 119.83992 * 179.68483 * 10 9 8 20 20 C 1.37651 * 119.53980 * 359.57540 * 19 10 9 21 21 C 1.38390 * 120.13936 * 0.61122 * 20 19 10 22 22 C 1.37204 * 121.81032 * 343.03332 * 9 8 7 23 23 C 1.46619 * 110.99761 * 62.54613 * 6 3 2 24 24 H 1.08994 * 109.47443 * 304.12354 * 1 2 3 25 25 H 1.08998 * 109.46927 * 64.12680 * 1 2 3 26 26 H 1.09001 * 109.46572 * 184.12115 * 1 2 3 27 27 H 1.08997 * 109.47339 * 240.00320 * 2 1 3 28 28 H 1.08997 * 109.46705 * 119.99516 * 2 1 3 29 29 H 1.08999 * 109.47470 * 185.87488 * 5 3 2 30 30 H 1.09004 * 109.46902 * 305.87494 * 5 3 2 31 31 H 1.08996 * 109.47437 * 65.86993 * 5 3 2 32 32 H 1.09003 * 109.64237 * 285.23738 * 7 6 3 33 33 H 1.09000 * 109.63665 * 45.65000 * 7 6 3 34 34 H 1.08996 * 109.39141 * 290.08513 * 8 7 6 35 35 H 1.08999 * 109.38217 * 170.40509 * 8 7 6 36 36 H 0.96997 * 120.00298 * 180.02562 * 14 13 11 37 37 H 1.08001 * 120.23100 * 179.83216 * 19 10 9 38 38 H 1.07995 * 119.92525 * 180.30642 * 20 19 10 39 39 H 1.07999 * 119.54041 * 179.65182 * 21 20 19 40 40 H 1.09003 * 109.26342 * 55.70820 * 23 6 3 41 41 H 1.08997 * 109.23953 * 296.22781 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6469 1.9669 -0.8710 5 6 3.5691 1.4429 -0.0517 6 7 1.5912 2.1206 1.2234 7 6 1.9513 3.5473 1.1981 8 6 1.1621 4.2654 2.2932 9 6 1.3128 3.5329 3.6013 10 6 0.9710 4.2065 4.7935 11 6 0.5111 5.5426 4.7456 12 1 0.7958 6.1826 3.9236 13 6 -0.3180 6.0339 5.7604 14 7 -1.0833 5.2144 6.4341 15 14 -0.3317 7.8602 6.1530 16 1 -1.4410 8.5167 5.4154 17 1 -0.5264 8.0513 7.6126 18 1 0.9613 8.4644 5.7427 19 6 1.0944 3.5478 6.0287 20 6 1.5402 2.2459 6.0621 21 6 1.8762 1.5962 4.8873 22 6 1.7645 2.2386 3.6576 23 6 2.1511 1.4774 2.4161 24 1 -0.3634 0.5765 0.8507 25 1 -0.3633 0.4485 -0.9246 26 1 -0.3632 -1.0251 0.0739 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9360 2.4639 0.0534 30 1 3.9602 0.8308 0.7611 31 1 3.9005 1.0341 -1.0062 32 1 3.0197 3.6589 1.3834 33 1 1.7021 3.9708 0.2251 34 1 0.1083 4.2992 2.0168 35 1 1.5385 5.2825 2.4026 36 1 -1.6582 5.5550 7.1372 37 1 0.8372 4.0581 6.9451 38 1 1.6326 1.7322 7.0075 39 1 2.2304 0.5766 4.9252 40 1 3.2377 1.4513 2.3341 41 1 1.7711 0.4582 2.4864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599678492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:22 Heat of formation + Delta-G solvation = 5.842517 kcal Electronic energy + Delta-G solvation = -19820.972325 eV Core-core repulsion = 17085.434099 eV Total energy + Delta-G solvation = -2735.538226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.33552 -37.14926 -33.99320 -33.42745 -31.23969 -30.32682 -28.80255 -28.21424 -25.08155 -24.37322 -23.42407 -22.00961 -20.46916 -19.90885 -18.06824 -17.00962 -15.85796 -15.10272 -14.83946 -14.75360 -14.25376 -13.75323 -13.53863 -13.24888 -13.22711 -12.94086 -12.44987 -12.29205 -11.85679 -11.59899 -11.45094 -11.39801 -11.23812 -11.11637 -11.01697 -10.89987 -10.61459 -10.55428 -10.34040 -10.21712 -10.10427 -9.35404 -9.19273 -8.95378 -7.84706 -7.28142 -7.09945 -6.77905 -4.26244 2.82107 3.01233 3.09544 3.13080 3.26208 3.96142 4.32863 4.62020 4.90937 5.17830 5.33207 5.50125 5.54321 5.57979 5.69139 5.74148 5.81681 5.91745 5.95831 6.04558 6.06661 6.15752 6.20819 6.24989 6.32288 6.40582 6.44007 6.49886 6.66790 6.72729 6.88346 7.03898 7.14930 7.19789 7.36278 7.56882 7.60706 7.73816 7.99269 8.08067 8.15136 8.35001 8.67006 8.93330 9.03917 10.19019 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027585 B = 0.005696 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.786444 B = 4914.527709 C = 5311.256958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.078 0.922 5 C -0.188 4.188 6 N -0.519 5.519 7 C 0.056 3.944 8 C -0.045 4.045 9 C -0.171 4.171 10 C 0.117 3.883 11 C -0.470 4.470 12 H 0.081 0.919 13 C 0.086 3.914 14 N -0.782 5.782 15 Si 0.895 3.105 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.176 4.176 20 C -0.100 4.100 21 C -0.242 4.242 22 C -0.057 4.057 23 C 0.101 3.899 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.280 0.720 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.399 -4.616 -8.954 10.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.032 4.032 4 H 0.096 0.904 5 C -0.246 4.246 6 N -0.242 5.242 7 C -0.072 4.072 8 C -0.083 4.083 9 C -0.173 4.173 10 C 0.115 3.885 11 C -0.499 4.499 12 H 0.099 0.901 13 C -0.134 4.134 14 N -0.407 5.407 15 Si 0.719 3.281 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.196 4.196 20 C -0.119 4.119 21 C -0.262 4.262 22 C -0.057 4.057 23 C -0.026 4.026 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.678 -4.666 -8.759 10.584 hybrid contribution 0.756 0.798 0.376 1.162 sum 4.434 -3.869 -8.383 10.242 Atomic orbital electron populations 1.21669 0.95161 1.00737 1.02704 1.21574 0.96973 0.95379 1.01287 1.21788 0.92351 0.95378 0.93679 0.90404 1.22489 0.98255 1.02114 1.01779 1.62485 1.58236 1.02437 1.01062 1.22194 0.97621 0.88202 0.99188 1.20091 0.99448 0.97184 0.91536 1.19281 1.10503 0.93638 0.93835 1.17476 0.88532 0.92359 0.90138 1.19493 1.26536 0.96612 1.07217 0.90103 1.25854 0.93151 0.99748 0.94636 1.69894 1.15634 1.37628 1.17495 0.86527 0.79754 0.83420 0.78401 1.19626 1.20096 1.18356 1.20997 1.06103 0.94785 0.97667 1.20515 1.00069 0.95432 0.95875 1.20142 1.14632 0.98966 0.92443 1.18961 1.00379 0.93859 0.92493 1.20896 0.96041 0.97456 0.88231 0.90757 0.93473 0.93837 0.92426 0.91979 0.92472 0.92306 0.92633 0.95148 0.91852 0.91903 0.91888 0.90915 0.87885 0.89648 0.89849 0.94829 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.83 37.16 0.37 -1.50 16 2 C -0.11 -1.41 5.19 -26.73 -0.14 -1.55 16 3 C 0.08 1.03 2.36 -67.71 -0.16 0.87 16 4 H 0.08 1.00 7.99 -51.93 -0.41 0.59 16 5 C -0.19 -2.29 8.41 37.15 0.31 -1.98 16 6 N -0.52 -8.75 3.92 -228.18 -0.90 -9.65 16 7 C 0.06 0.96 4.90 -3.73 -0.02 0.94 16 8 C -0.05 -0.95 5.25 -27.95 -0.15 -1.09 16 9 C -0.17 -4.13 5.83 -103.91 -0.61 -4.74 16 10 C 0.12 3.11 5.53 -106.74 -0.59 2.52 16 11 C -0.47 -12.30 8.32 -37.74 -0.31 -12.62 16 12 H 0.08 2.03 6.47 -52.49 -0.34 1.69 16 13 C 0.09 2.15 4.89 -17.34 -0.08 2.07 16 14 N -0.78 -20.44 11.68 55.55 0.65 -19.79 16 15 Si 0.89 18.58 29.64 -169.99 -5.04 13.54 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 19 C -0.18 -4.64 8.73 -38.93 -0.34 -4.98 16 20 C -0.10 -2.41 10.02 -39.74 -0.40 -2.81 16 21 C -0.24 -5.52 9.65 -39.17 -0.38 -5.90 16 22 C -0.06 -1.28 5.79 -104.66 -0.61 -1.88 16 23 C 0.10 1.85 4.49 -5.15 -0.02 1.83 16 24 H 0.07 1.16 7.54 -51.93 -0.39 0.76 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 29 H 0.06 0.73 6.62 -51.93 -0.34 0.39 16 30 H 0.06 0.75 6.61 -51.93 -0.34 0.40 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.53 7.02 -51.93 -0.36 0.16 16 33 H 0.06 0.96 7.92 -51.93 -0.41 0.55 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.06 1.30 6.72 -51.93 -0.35 0.95 16 36 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 37 H 0.10 2.78 6.63 -52.49 -0.35 2.43 16 38 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 39 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.03 0.59 6.13 -51.93 -0.32 0.28 16 41 H 0.07 1.28 6.49 -51.93 -0.34 0.95 16 LS Contribution 313.44 15.07 4.72 4.72 Total: -1.00 -27.13 313.44 -10.08 -37.21 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.39 Total: 4.78 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: -3.13 Total: -30.82 kcal Atomic # 7 Polarization: -29.19 SS G_CDS: -0.25 Total: -29.43 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.04 Total: 13.54 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.13 -10.08 -37.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599678492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.050 kcal (2) G-P(sol) polarization free energy of solvation -27.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds