Wall clock time and date at job start Mon Mar 30 2020 07:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.53002 * 109.47138 * 119.99662 * 2 1 3 5 5 N 1.46901 * 109.47052 * 64.99848 * 4 2 1 6 6 C 1.47170 * 110.99798 * 189.01805 * 5 4 2 7 7 C 1.52890 * 108.45325 * 165.53490 * 6 5 4 8 8 C 1.50677 * 109.99314 * 50.25896 * 7 6 5 9 9 C 1.41121 * 118.50105 * 163.31749 * 8 7 6 10 10 C 1.41392 * 120.07620 * 359.44847 * 9 8 7 11 11 H 1.08005 * 120.00391 * 329.46916 * 10 9 8 12 12 C 1.39946 * 119.99840 * 149.46337 * 10 9 8 13 13 N 1.30830 * 119.99832 * 162.24922 * 12 10 9 14 14 Si 1.86796 * 119.99967 * 342.25661 * 12 10 9 15 15 H 1.48497 * 109.47337 * 95.38234 * 14 12 10 16 16 H 1.48503 * 109.46721 * 215.37865 * 14 12 10 17 17 H 1.48495 * 109.47275 * 335.37508 * 14 12 10 18 18 C 1.40522 * 119.84237 * 179.44954 * 9 8 7 19 19 C 1.37645 * 119.54007 * 0.12285 * 18 9 8 20 20 C 1.38387 * 120.14035 * 0.04560 * 19 18 9 21 21 C 1.37212 * 121.80440 * 343.06430 * 8 7 6 22 22 C 1.46617 * 110.99736 * 66.05025 * 5 4 2 23 23 H 1.08999 * 109.47220 * 300.00069 * 1 2 3 24 24 H 1.09001 * 109.47283 * 60.00085 * 1 2 3 25 25 H 1.09001 * 109.47009 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47220 * 239.99931 * 2 1 3 27 27 H 1.08993 * 109.47322 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46497 * 299.99593 * 3 2 1 29 29 H 1.08999 * 109.47165 * 59.99897 * 3 2 1 30 30 H 1.09003 * 109.47092 * 304.99837 * 4 2 1 31 31 H 1.08996 * 109.46991 * 185.00307 * 4 2 1 32 32 H 1.09004 * 109.64155 * 285.22094 * 6 5 4 33 33 H 1.09002 * 109.63943 * 45.84289 * 6 5 4 34 34 H 1.09004 * 109.38229 * 290.10099 * 7 6 5 35 35 H 1.09007 * 109.30510 * 170.36750 * 7 6 5 36 36 H 0.96997 * 119.99348 * 180.02562 * 13 12 10 37 37 H 1.08005 * 120.23106 * 180.09684 * 18 9 8 38 38 H 1.08001 * 119.93268 * 180.02562 * 19 18 9 39 39 H 1.08003 * 119.53705 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.26215 * 296.20863 * 22 5 4 41 41 H 1.08999 * 109.26613 * 55.70289 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 -2.1366 1.1905 6 6 1.9345 -2.8146 2.4657 7 6 1.1948 -4.1526 2.4771 8 6 1.4823 -4.9110 1.2072 9 6 1.1975 -6.2927 1.1688 10 6 0.6658 -6.9385 2.3087 11 1 0.9152 -6.5817 3.2972 12 6 -0.1839 -8.0399 2.1562 13 7 -0.3985 -8.8451 3.1648 14 14 -1.0116 -8.3606 0.5126 15 1 -0.2049 -9.3340 -0.2663 16 1 -2.3699 -8.9150 0.7423 17 1 -1.1181 -7.0876 -0.2447 18 6 1.4437 -7.0250 -0.0049 19 6 1.9639 -6.3856 -1.1072 20 6 2.2427 -5.0310 -1.0576 21 6 2.0040 -4.2935 0.0985 22 6 2.3328 -2.8233 0.0888 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6054 -0.2616 2.1370 31 1 3.1263 -0.6442 1.2952 32 1 3.0067 -2.9880 2.5583 33 1 1.5873 -2.1970 3.2940 34 1 0.1226 -3.9726 2.5561 35 1 1.5269 -4.7408 3.3327 36 1 -0.9871 -9.6088 3.0589 37 1 1.2267 -8.0824 -0.0417 38 1 2.1552 -6.9423 -2.0127 39 1 2.6511 -4.5392 -1.9281 40 1 2.0124 -2.3894 -0.8584 41 1 3.4099 -2.6955 0.1968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599685766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:22 Heat of formation + Delta-G solvation = 2.463715 kcal Electronic energy + Delta-G solvation = -19643.792214 eV Core-core repulsion = 16908.107473 eV Total energy + Delta-G solvation = -2735.684742 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.23888 -37.22360 -34.78257 -33.59500 -31.72097 -30.54758 -28.87646 -27.03951 -25.98171 -24.94636 -23.39771 -22.10215 -20.43224 -19.76323 -18.71601 -17.05693 -15.93350 -15.31511 -15.22405 -14.74681 -14.42363 -14.18195 -13.66538 -13.23776 -13.07780 -12.84107 -12.71457 -12.37122 -12.09207 -11.87073 -11.77136 -11.66441 -11.39707 -11.24448 -10.93847 -10.77373 -10.72152 -10.64427 -10.43658 -10.28498 -9.89104 -9.63364 -9.32308 -9.04002 -8.01089 -7.45268 -7.35997 -6.89197 -4.42401 2.65257 2.65525 3.15515 3.25666 3.37780 4.03988 4.21649 4.53223 4.85393 5.00782 5.22117 5.35724 5.42748 5.50422 5.61409 5.66144 5.70726 5.83522 5.90025 5.91819 5.94715 6.01659 6.03766 6.09592 6.15346 6.18709 6.28017 6.38570 6.55452 6.56881 6.69203 6.73030 6.93573 6.98568 7.17966 7.41204 7.43845 7.55669 7.76324 7.79524 7.95016 8.16799 8.41027 8.71837 8.86310 10.13103 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028827 B = 0.005628 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.072947 B = 4974.343687 C = 5269.904267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.059 3.941 5 N -0.527 5.527 6 C 0.055 3.945 7 C -0.049 4.049 8 C -0.153 4.153 9 C 0.094 3.906 10 C -0.447 4.447 11 H 0.093 0.907 12 C 0.086 3.914 13 N -0.813 5.813 14 Si 0.910 3.090 15 H -0.272 1.272 16 H -0.293 1.293 17 H -0.244 1.244 18 C -0.241 4.241 19 C -0.081 4.081 20 C -0.238 4.238 21 C -0.051 4.051 22 C 0.103 3.897 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.030 0.970 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.283 0.717 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.706 13.138 -4.150 14.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.070 4.070 5 N -0.251 5.251 6 C -0.072 4.072 7 C -0.086 4.086 8 C -0.155 4.155 9 C 0.091 3.909 10 C -0.476 4.476 11 H 0.111 0.889 12 C -0.132 4.132 13 N -0.438 5.438 14 Si 0.737 3.263 15 H -0.199 1.199 16 H -0.220 1.220 17 H -0.167 1.167 18 C -0.260 4.260 19 C -0.099 4.099 20 C -0.258 4.258 21 C -0.051 4.051 22 C -0.025 4.025 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.075 12.911 -4.045 13.688 hybrid contribution 0.511 -0.400 -0.574 0.866 sum 2.586 12.511 -4.619 13.585 Atomic orbital electron populations 1.21711 0.94503 1.02944 1.00347 1.21136 0.96929 0.95085 0.98230 1.21823 1.00593 0.96318 1.01613 1.22206 0.97329 0.89075 0.98339 1.62263 1.57689 1.00995 1.04183 1.22215 0.98061 0.96308 0.90658 1.20152 0.99910 0.92301 0.96274 1.19336 1.08122 0.93074 0.94930 1.17660 0.90413 0.90583 0.92256 1.19467 1.24340 1.09284 0.94492 0.88945 1.26107 0.95513 0.93264 0.98359 1.69697 1.29812 1.11011 1.33238 0.86330 0.77278 0.80551 0.82152 1.19873 1.22045 1.16746 1.20955 1.10786 0.98410 0.95883 1.20478 0.98377 0.94290 0.96756 1.20212 1.13650 0.94491 0.97408 1.19053 0.99324 0.92686 0.94081 1.20885 0.94934 0.92201 0.94450 0.93327 0.93787 0.91055 0.91194 0.93073 0.92733 0.92802 0.91055 0.95461 0.95144 0.91463 0.91443 0.91260 0.90617 0.88366 0.89013 0.89167 0.90601 0.95059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.08 37.16 0.34 -1.32 16 2 C -0.10 -1.11 2.83 -90.62 -0.26 -1.36 16 3 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 4 C 0.06 0.76 4.33 -3.82 -0.02 0.74 16 5 N -0.53 -8.56 4.14 -236.17 -0.98 -9.54 16 6 C 0.06 0.93 5.58 -3.73 -0.02 0.90 16 7 C -0.05 -1.00 5.27 -27.95 -0.15 -1.14 16 8 C -0.15 -3.54 5.83 -103.91 -0.61 -4.15 16 9 C 0.09 2.39 5.10 -106.74 -0.54 1.84 16 10 C -0.45 -11.99 8.84 -37.74 -0.33 -12.33 16 11 H 0.09 2.56 6.68 -52.48 -0.35 2.21 16 12 C 0.09 2.26 5.40 -17.34 -0.09 2.17 16 13 N -0.81 -21.80 13.93 55.55 0.77 -21.02 16 14 Si 0.91 21.30 24.52 -169.99 -4.17 17.13 16 15 H -0.27 -6.21 6.72 56.52 0.38 -5.83 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.24 -5.93 6.86 56.52 0.39 -5.54 16 18 C -0.24 -5.94 7.16 -38.94 -0.28 -6.22 16 19 C -0.08 -1.79 10.02 -39.74 -0.40 -2.19 16 20 C -0.24 -5.04 9.65 -39.17 -0.38 -5.41 16 21 C -0.05 -1.09 5.79 -104.66 -0.61 -1.69 16 22 C 0.10 1.78 4.90 -5.15 -0.03 1.76 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 1.03 7.75 -51.93 -0.40 0.63 16 26 H 0.07 0.87 6.41 -51.93 -0.33 0.53 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.87 7.91 -51.93 -0.41 0.46 16 31 H 0.03 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 33 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.07 1.43 6.75 -51.93 -0.35 1.08 16 36 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 37 H 0.10 2.42 4.78 -52.48 -0.25 2.17 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.08 1.24 6.52 -51.93 -0.34 0.90 16 41 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 LS Contribution 314.38 15.07 4.74 4.74 Total: -1.00 -27.21 314.38 -9.31 -36.52 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.65 Total: 1.61 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -3.03 Total: -29.43 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: -0.20 Total: -30.56 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.17 Total: 17.13 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.21 -9.31 -36.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599685766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.983 kcal (2) G-P(sol) polarization free energy of solvation -27.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds