Wall clock time and date at job start Mon Mar 30 2020 07:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.53002 * 109.47138 * 119.99662 * 2 1 3 5 5 N 1.46901 * 109.47052 * 64.99848 * 4 2 1 6 6 C 1.47170 * 110.99798 * 189.01805 * 5 4 2 7 7 C 1.52890 * 108.45325 * 165.53490 * 6 5 4 8 8 C 1.50677 * 109.99314 * 50.25896 * 7 6 5 9 9 C 1.41121 * 118.50105 * 163.31749 * 8 7 6 10 10 C 1.41392 * 120.07620 * 359.44847 * 9 8 7 11 11 H 1.08005 * 120.00391 * 329.46916 * 10 9 8 12 12 C 1.39946 * 119.99840 * 149.46337 * 10 9 8 13 13 N 1.30830 * 119.99832 * 162.24922 * 12 10 9 14 14 Si 1.86796 * 119.99967 * 342.25661 * 12 10 9 15 15 H 1.48497 * 109.47337 * 95.38234 * 14 12 10 16 16 H 1.48503 * 109.46721 * 215.37865 * 14 12 10 17 17 H 1.48495 * 109.47275 * 335.37508 * 14 12 10 18 18 C 1.40522 * 119.84237 * 179.44954 * 9 8 7 19 19 C 1.37645 * 119.54007 * 0.12285 * 18 9 8 20 20 C 1.38387 * 120.14035 * 0.04560 * 19 18 9 21 21 C 1.37212 * 121.80440 * 343.06430 * 8 7 6 22 22 C 1.46617 * 110.99736 * 66.05025 * 5 4 2 23 23 H 1.08999 * 109.47220 * 300.00069 * 1 2 3 24 24 H 1.09001 * 109.47283 * 60.00085 * 1 2 3 25 25 H 1.09001 * 109.47009 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47220 * 239.99931 * 2 1 3 27 27 H 1.08993 * 109.47322 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.46497 * 299.99593 * 3 2 1 29 29 H 1.08999 * 109.47165 * 59.99897 * 3 2 1 30 30 H 1.09003 * 109.47092 * 304.99837 * 4 2 1 31 31 H 1.08996 * 109.46991 * 185.00307 * 4 2 1 32 32 H 1.09004 * 109.64155 * 285.22094 * 6 5 4 33 33 H 1.09002 * 109.63943 * 45.84289 * 6 5 4 34 34 H 1.09004 * 109.38229 * 290.10099 * 7 6 5 35 35 H 1.09007 * 109.30510 * 170.36750 * 7 6 5 36 36 H 0.96997 * 119.99348 * 180.02562 * 13 12 10 37 37 H 1.08005 * 120.23106 * 180.09684 * 18 9 8 38 38 H 1.08001 * 119.93268 * 180.02562 * 19 18 9 39 39 H 1.08003 * 119.53705 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.26215 * 296.20863 * 22 5 4 41 41 H 1.08999 * 109.26613 * 55.70289 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 -2.1366 1.1905 6 6 1.9345 -2.8146 2.4657 7 6 1.1948 -4.1526 2.4771 8 6 1.4823 -4.9110 1.2072 9 6 1.1975 -6.2927 1.1688 10 6 0.6658 -6.9385 2.3087 11 1 0.9152 -6.5817 3.2972 12 6 -0.1839 -8.0399 2.1562 13 7 -0.3985 -8.8451 3.1648 14 14 -1.0116 -8.3606 0.5126 15 1 -0.2049 -9.3340 -0.2663 16 1 -2.3699 -8.9150 0.7423 17 1 -1.1181 -7.0876 -0.2447 18 6 1.4437 -7.0250 -0.0049 19 6 1.9639 -6.3856 -1.1072 20 6 2.2427 -5.0310 -1.0576 21 6 2.0040 -4.2935 0.0985 22 6 2.3328 -2.8233 0.0888 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6054 -0.2616 2.1370 31 1 3.1263 -0.6442 1.2952 32 1 3.0067 -2.9880 2.5583 33 1 1.5873 -2.1970 3.2940 34 1 0.1226 -3.9726 2.5561 35 1 1.5269 -4.7408 3.3327 36 1 -0.9871 -9.6088 3.0589 37 1 1.2267 -8.0824 -0.0417 38 1 2.1552 -6.9423 -2.0127 39 1 2.6511 -4.5392 -1.9281 40 1 2.0124 -2.3894 -0.8584 41 1 3.4099 -2.6955 0.1968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599685766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:22 Heat of formation + Delta-G solvation = -12.043933 kcal Electronic energy + Delta-G solvation = -19644.421313 eV Core-core repulsion = 16908.107473 eV Total energy + Delta-G solvation = -2736.313841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76903 -38.63831 -36.01787 -35.44638 -33.39398 -32.12653 -30.51723 -27.87412 -27.27319 -26.80082 -24.80638 -23.59419 -22.24657 -20.77938 -20.28446 -18.91214 -17.62302 -16.69649 -16.60355 -16.33199 -15.71271 -15.63133 -15.09903 -14.77488 -14.54953 -14.38812 -14.15701 -13.68222 -13.44862 -13.25462 -13.11857 -13.03400 -12.91479 -12.61127 -12.50611 -12.34919 -12.18832 -11.81611 -11.74021 -11.61568 -11.45414 -11.29343 -11.04188 -10.85053 -9.42704 -9.23290 -9.02721 -8.86283 -6.43548 0.81607 0.85434 1.25215 1.39146 1.47896 2.13335 2.61801 3.01109 3.48081 3.87623 3.97492 4.12359 4.21031 4.34389 4.35693 4.41736 4.53934 4.55339 4.60398 4.66600 4.75895 4.82210 4.86651 4.89450 4.91641 5.02456 5.04972 5.12931 5.18783 5.20318 5.28537 5.33788 5.35860 5.52352 5.59713 5.72509 5.89058 5.94795 6.04174 6.17209 6.19825 6.37385 6.50011 6.81367 6.90653 8.21863 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028827 B = 0.005628 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.072947 B = 4974.343687 C = 5269.904267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 C -0.140 4.140 4 C 0.060 3.940 5 N -0.538 5.538 6 C 0.065 3.935 7 C -0.047 4.047 8 C -0.169 4.169 9 C 0.069 3.931 10 C -0.477 4.477 11 H 0.064 0.936 12 C 0.050 3.950 13 N -0.853 5.853 14 Si 0.962 3.038 15 H -0.262 1.262 16 H -0.280 1.280 17 H -0.259 1.259 18 C -0.259 4.259 19 C -0.090 4.090 20 C -0.224 4.224 21 C -0.059 4.059 22 C 0.108 3.892 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.291 0.709 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.093 0.907 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 15.698 -6.412 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 C -0.198 4.198 4 C -0.068 4.068 5 N -0.263 5.263 6 C -0.063 4.063 7 C -0.084 4.084 8 C -0.170 4.170 9 C 0.066 3.934 10 C -0.506 4.506 11 H 0.082 0.918 12 C -0.163 4.163 13 N -0.481 5.481 14 Si 0.786 3.214 15 H -0.188 1.188 16 H -0.207 1.207 17 H -0.183 1.183 18 C -0.278 4.278 19 C -0.108 4.108 20 C -0.243 4.243 21 C -0.059 4.059 22 C -0.019 4.019 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.111 0.889 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.991 15.479 -6.308 16.981 hybrid contribution 0.338 -1.031 0.037 1.085 sum 3.328 14.449 -6.271 16.099 Atomic orbital electron populations 1.21671 0.95012 1.01325 1.01220 1.21127 0.96414 0.96362 0.97211 1.21770 1.00993 0.94651 1.02392 1.22300 0.98041 0.86851 0.99568 1.62224 1.58097 1.02593 1.03344 1.22090 0.97484 0.94650 0.92089 1.20092 0.99556 0.94123 0.94665 1.19745 1.07916 0.92644 0.96710 1.17896 0.91162 0.91975 0.92348 1.19441 1.26452 1.10789 0.93957 0.91812 1.26687 0.95719 0.93021 1.00916 1.69725 1.31516 1.12098 1.34721 0.85539 0.77148 0.79751 0.78916 1.18799 1.20675 1.18338 1.21087 1.11738 0.98380 0.96601 1.20869 0.97602 0.95206 0.97113 1.20747 1.11068 0.94167 0.98345 1.19580 0.97834 0.95184 0.93296 1.20864 0.95738 0.89591 0.95738 0.92817 0.92654 0.93817 0.91702 0.92400 0.91884 0.92174 0.90104 0.94496 0.95018 0.89136 0.92773 0.92953 0.89890 0.89056 0.85896 0.85503 0.88903 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.08 71.98 0.65 -2.25 16 2 C -0.09 -1.83 2.83 -10.79 -0.03 -1.86 16 3 C -0.14 -2.10 9.19 71.98 0.66 -1.44 16 4 C 0.06 1.34 4.33 86.30 0.37 1.72 16 5 N -0.54 -16.13 4.14 -901.12 -3.73 -19.86 16 6 C 0.06 2.07 5.58 86.22 0.48 2.56 16 7 C -0.05 -1.95 5.27 29.80 0.16 -1.79 16 8 C -0.17 -7.85 5.83 -19.41 -0.11 -7.97 16 9 C 0.07 3.59 5.10 -21.24 -0.11 3.48 16 10 C -0.48 -27.04 8.84 23.46 0.21 -26.84 16 11 H 0.06 3.84 6.68 -2.91 -0.02 3.82 16 12 C 0.05 2.77 5.40 85.26 0.46 3.23 16 13 N -0.85 -47.88 13.93 21.83 0.30 -47.57 16 14 Si 0.96 44.90 24.52 68.60 1.68 46.59 16 15 H -0.26 -11.66 6.72 99.48 0.67 -11.00 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 17 H -0.26 -12.57 6.86 99.48 0.68 -11.89 16 18 C -0.26 -12.73 7.16 22.69 0.16 -12.56 16 19 C -0.09 -3.79 10.02 22.16 0.22 -3.57 16 20 C -0.22 -8.74 9.65 22.53 0.22 -8.53 16 21 C -0.06 -2.37 5.79 -19.89 -0.12 -2.49 16 22 C 0.11 3.40 4.90 85.60 0.42 3.82 16 23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 25 H 0.04 1.18 7.75 -2.39 -0.02 1.16 16 26 H 0.06 1.36 6.41 -2.39 -0.02 1.35 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.69 7.91 -2.39 -0.02 1.67 16 31 H 0.04 0.78 8.07 -2.39 -0.02 0.77 16 32 H 0.03 1.01 8.05 -2.38 -0.02 0.99 16 33 H 0.09 2.47 7.87 -2.39 -0.02 2.45 16 34 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.05 2.31 6.75 -2.38 -0.02 2.29 16 36 H 0.29 14.76 8.30 -92.71 -0.77 13.99 16 37 H 0.09 4.53 4.78 -2.91 -0.01 4.52 16 38 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 39 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.09 2.65 6.52 -2.38 -0.02 2.63 16 41 H 0.04 1.32 8.08 -2.39 -0.02 1.30 16 Total: -1.00 -60.50 314.38 2.84 -57.67 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.93 Total: 17.68 kcal Atomic # 6 Polarization: -58.15 SS G_CDS: 3.65 Total: -54.50 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -3.43 Total: -67.43 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.68 Total: 46.59 kcal Total: -60.50 2.84 -57.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599685766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.624 kcal (2) G-P(sol) polarization free energy of solvation -60.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds