Wall clock time and date at job start Mon Mar 30 2020 06:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47458 * 2 1 4 4 C 1.53004 * 109.46863 * 119.99601 * 2 1 3 5 5 C 1.52994 * 115.55576 * 295.54914 * 4 2 1 6 6 N 1.46500 * 109.47228 * 269.76443 * 5 4 2 7 7 C 1.39681 * 120.00223 * 183.30620 * 6 5 4 8 8 C 1.39339 * 119.94911 * 359.97438 * 7 6 5 9 9 C 1.38482 * 120.42352 * 179.97438 * 8 7 6 10 10 C 1.37689 * 120.32521 * 0.26143 * 9 8 7 11 11 C 1.40749 * 119.88955 * 359.48821 * 10 9 8 12 12 C 1.41413 * 120.20666 * 180.25418 * 11 10 9 13 13 H 1.07999 * 120.00149 * 205.13968 * 12 11 10 14 14 C 1.39932 * 119.99625 * 25.13721 * 12 11 10 15 15 N 1.30831 * 120.00031 * 15.37672 * 14 12 11 16 16 Si 1.86802 * 119.99960 * 195.36880 * 14 12 11 17 17 H 1.48498 * 109.47000 * 60.00297 * 16 14 12 18 18 H 1.48496 * 109.47268 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47273 * 300.00393 * 16 14 12 20 20 C 1.38279 * 119.95479 * 179.97438 * 7 6 5 21 21 C 1.53007 * 117.51605 * 81.25405 * 4 2 1 22 22 C 1.53004 * 60.00211 * 107.47909 * 21 4 2 23 23 H 1.08997 * 109.46944 * 185.64167 * 1 2 3 24 24 H 1.08999 * 109.46816 * 305.64516 * 1 2 3 25 25 H 1.09001 * 109.46679 * 65.64200 * 1 2 3 26 26 H 1.09001 * 109.47292 * 239.99607 * 2 1 3 27 27 H 1.08990 * 109.47211 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47062 * 300.00074 * 3 2 1 29 29 H 1.09001 * 109.47190 * 59.99545 * 3 2 1 30 30 H 1.08997 * 109.47712 * 149.75915 * 5 4 2 31 31 H 1.09002 * 109.46738 * 29.76003 * 5 4 2 32 32 H 0.97002 * 119.99743 * 3.29995 * 6 5 4 33 33 H 1.07998 * 119.78881 * 359.96090 * 8 7 6 34 34 H 1.08001 * 119.83641 * 179.97438 * 9 8 7 35 35 H 1.07995 * 120.05420 * 179.72213 * 10 9 8 36 36 H 0.97001 * 119.99735 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.15879 * 0.02562 * 20 7 6 38 38 H 1.08997 * 117.49639 * 214.96561 * 21 4 2 39 39 H 1.09001 * 117.49416 * 359.97438 * 21 4 2 40 40 H 1.09003 * 117.49760 * 252.51485 * 22 21 4 41 41 H 1.09001 * 117.50122 * 107.48928 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6987 -0.0530 2.5827 6 7 2.7674 0.8797 2.9491 7 6 2.7126 1.5608 4.1674 8 6 1.6408 1.3528 5.0331 9 6 1.5769 2.0224 6.2436 10 6 2.5701 2.9059 6.6026 11 6 3.6616 3.1222 5.7407 12 6 4.6880 4.0241 6.1052 13 1 5.2842 4.5010 5.3413 14 6 4.9312 4.2986 7.4556 15 7 4.4348 3.5187 8.3814 16 14 5.9647 5.7785 7.9365 17 1 5.3220 7.0171 7.4287 18 1 6.0728 5.8471 9.4159 19 1 7.3215 5.6473 7.3470 20 6 3.7221 2.4405 4.5126 21 6 2.0810 -2.2503 1.2156 22 6 3.3823 -1.4484 1.1468 23 1 -0.3633 -1.0227 0.1010 24 1 -0.3633 0.5989 0.8351 25 1 -0.3633 0.4239 -0.9362 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9564 0.8899 30 1 1.6001 -0.8146 3.3561 31 1 0.7590 0.4909 2.4864 32 1 3.5130 1.0242 2.3458 33 1 0.8548 0.6650 4.7583 34 1 0.7416 1.8543 6.9072 35 1 2.5135 3.4291 7.5457 36 1 4.6037 3.7088 9.3174 37 1 4.5531 2.6029 3.8421 38 1 1.8649 -2.7802 2.1433 39 1 1.7443 -2.7428 0.3033 40 1 3.9018 -1.4133 0.1892 41 1 4.0222 -1.4507 2.0292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602682972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:41 Heat of formation + Delta-G solvation = 25.966694 kcal Electronic energy + Delta-G solvation = -19061.279230 eV Core-core repulsion = 16326.613654 eV Total energy + Delta-G solvation = -2734.665576 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -39.24764 -37.43795 -34.48827 -33.37526 -32.76280 -29.70892 -28.36856 -27.16710 -25.30794 -25.01291 -22.57853 -22.26244 -20.77891 -20.07023 -18.38863 -17.21163 -15.77891 -15.59661 -15.37922 -14.68579 -14.47795 -14.07309 -13.69732 -13.19922 -12.98851 -12.93720 -12.54707 -12.42283 -12.08507 -12.01624 -11.52534 -11.50799 -11.23414 -11.18173 -11.06949 -11.04131 -10.59448 -10.45787 -10.34560 -10.05403 -9.92236 -9.59907 -9.24731 -9.16283 -8.64065 -7.32368 -6.64482 -6.11910 -4.26918 2.91247 3.11722 3.14918 3.27836 3.43042 3.63771 4.00788 4.45690 4.55757 4.72487 4.78661 4.88578 4.97835 5.29602 5.38487 5.44278 5.61884 5.68139 5.79268 5.87112 5.89285 5.92777 5.96780 5.99614 6.05846 6.14849 6.32727 6.33246 6.38534 6.47383 6.60484 7.08975 7.13030 7.16839 7.41390 7.47368 7.85426 7.97521 8.19759 8.32157 8.57665 8.72997 8.85242 9.05375 9.18296 10.31047 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.033443 B = 0.004201 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.042560 B = 6663.348460 C = 6844.701762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 C -0.147 4.147 4 C -0.130 4.130 5 C 0.175 3.825 6 N -0.757 5.757 7 C 0.225 3.775 8 C -0.301 4.301 9 C -0.076 4.076 10 C -0.199 4.199 11 C 0.141 3.859 12 C -0.465 4.465 13 H 0.074 0.926 14 C 0.077 3.923 15 N -0.796 5.796 16 Si 0.907 3.093 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.289 4.289 21 C -0.169 4.169 22 C -0.170 4.170 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.388 0.612 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.278 0.722 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 -6.678 -12.204 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 C -0.205 4.205 4 C -0.131 4.131 5 C 0.050 3.950 6 N -0.391 5.391 7 C 0.126 3.874 8 C -0.325 4.325 9 C -0.095 4.095 10 C -0.219 4.219 11 C 0.138 3.862 12 C -0.495 4.495 13 H 0.092 0.908 14 C -0.140 4.140 15 N -0.421 5.421 16 Si 0.731 3.269 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.192 1.192 20 C -0.313 4.313 21 C -0.206 4.206 22 C -0.207 4.207 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.221 0.779 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.488 -6.816 -11.917 14.443 hybrid contribution 0.798 0.555 0.115 0.978 sum -3.690 -6.261 -11.802 13.860 Atomic orbital electron populations 1.21827 0.95056 1.01741 1.01692 1.20615 0.95617 0.96136 0.94893 1.21843 1.01009 0.95458 1.02166 1.21783 1.01426 0.93340 0.96527 1.20503 0.91239 0.91707 0.91544 1.44475 1.25990 1.48722 1.19914 1.17471 0.94124 0.91254 0.84528 1.19860 1.01587 1.12393 0.98612 1.20444 0.97397 0.96835 0.94833 1.21211 0.94930 1.03637 1.02150 1.17336 0.90815 0.88448 0.89603 1.19518 1.15295 1.22751 0.91917 0.90792 1.25879 0.95353 0.96303 0.96498 1.69847 1.37155 1.33357 1.01776 0.86404 0.80556 0.82218 0.77676 1.18926 1.20434 1.19152 1.20393 1.01022 1.07599 1.02291 1.23010 1.01790 0.92833 1.02969 1.22981 0.90670 1.03934 1.03129 0.92747 0.92191 0.92944 0.91664 0.92832 0.93159 0.91353 0.93315 0.92864 0.77860 0.89829 0.89775 0.86626 0.91083 0.89454 0.88756 0.88987 0.89055 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.95 37.16 0.33 -1.14 16 2 C -0.05 -0.58 2.74 -90.62 -0.25 -0.83 16 3 C -0.15 -1.73 8.37 37.16 0.31 -1.42 16 4 C -0.13 -1.55 1.18 -154.50 -0.18 -1.74 16 5 C 0.18 2.65 4.08 -4.04 -0.02 2.63 16 6 N -0.76 -13.59 4.78 -58.69 -0.28 -13.87 16 7 C 0.22 5.12 6.64 -83.86 -0.56 4.56 16 8 C -0.30 -6.99 9.31 -39.08 -0.36 -7.36 16 9 C -0.08 -1.87 10.02 -39.69 -0.40 -2.26 16 10 C -0.20 -5.38 8.69 -38.83 -0.34 -5.72 16 11 C 0.14 3.89 5.57 -106.85 -0.60 3.29 16 12 C -0.46 -12.72 9.06 -37.74 -0.34 -13.06 16 13 H 0.07 1.95 7.89 -52.49 -0.41 1.53 16 14 C 0.08 1.98 5.19 -17.34 -0.09 1.89 16 15 N -0.80 -21.20 10.85 55.55 0.60 -20.60 16 16 Si 0.91 19.16 29.59 -169.99 -5.03 14.13 16 17 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 C -0.29 -7.30 9.63 -38.68 -0.37 -7.67 16 21 C -0.17 -1.78 9.90 -26.73 -0.26 -2.05 16 22 C -0.17 -1.94 9.47 -26.72 -0.25 -2.19 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.67 6.89 -51.93 -0.36 0.31 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.95 7.00 -51.93 -0.36 0.59 16 30 H 0.05 0.79 7.51 -51.93 -0.39 0.40 16 31 H 0.05 0.83 6.49 -51.93 -0.34 0.49 16 32 H 0.39 6.54 7.87 -40.82 -0.32 6.22 16 33 H 0.08 1.76 6.70 -52.49 -0.35 1.41 16 34 H 0.08 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.12 3.23 6.11 -52.49 -0.32 2.91 16 36 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 37 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 329.33 15.07 4.96 4.96 Total: -1.00 -27.87 329.33 -9.75 -37.63 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.63 Total: 10.81 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: -3.38 Total: -33.06 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.32 Total: -34.47 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.87 -9.75 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602682972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.594 kcal (2) G-P(sol) polarization free energy of solvation -27.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds