Wall clock time and date at job start Mon Mar 30 2020 06:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47458 * 2 1 4 4 C 1.53004 * 109.46863 * 119.99601 * 2 1 3 5 5 C 1.52994 * 115.55576 * 295.54914 * 4 2 1 6 6 N 1.46500 * 109.47228 * 269.76443 * 5 4 2 7 7 C 1.39681 * 120.00223 * 183.30620 * 6 5 4 8 8 C 1.39339 * 119.94911 * 359.97438 * 7 6 5 9 9 C 1.38482 * 120.42352 * 179.97438 * 8 7 6 10 10 C 1.37689 * 120.32521 * 0.26143 * 9 8 7 11 11 C 1.40749 * 119.88955 * 359.48821 * 10 9 8 12 12 C 1.41413 * 120.20666 * 180.25418 * 11 10 9 13 13 H 1.07999 * 120.00149 * 205.13968 * 12 11 10 14 14 C 1.39932 * 119.99625 * 25.13721 * 12 11 10 15 15 N 1.30831 * 120.00031 * 15.37672 * 14 12 11 16 16 Si 1.86802 * 119.99960 * 195.36880 * 14 12 11 17 17 H 1.48498 * 109.47000 * 60.00297 * 16 14 12 18 18 H 1.48496 * 109.47268 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47273 * 300.00393 * 16 14 12 20 20 C 1.38279 * 119.95479 * 179.97438 * 7 6 5 21 21 C 1.53007 * 117.51605 * 81.25405 * 4 2 1 22 22 C 1.53004 * 60.00211 * 107.47909 * 21 4 2 23 23 H 1.08997 * 109.46944 * 185.64167 * 1 2 3 24 24 H 1.08999 * 109.46816 * 305.64516 * 1 2 3 25 25 H 1.09001 * 109.46679 * 65.64200 * 1 2 3 26 26 H 1.09001 * 109.47292 * 239.99607 * 2 1 3 27 27 H 1.08990 * 109.47211 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47062 * 300.00074 * 3 2 1 29 29 H 1.09001 * 109.47190 * 59.99545 * 3 2 1 30 30 H 1.08997 * 109.47712 * 149.75915 * 5 4 2 31 31 H 1.09002 * 109.46738 * 29.76003 * 5 4 2 32 32 H 0.97002 * 119.99743 * 3.29995 * 6 5 4 33 33 H 1.07998 * 119.78881 * 359.96090 * 8 7 6 34 34 H 1.08001 * 119.83641 * 179.97438 * 9 8 7 35 35 H 1.07995 * 120.05420 * 179.72213 * 10 9 8 36 36 H 0.97001 * 119.99735 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.15879 * 0.02562 * 20 7 6 38 38 H 1.08997 * 117.49639 * 214.96561 * 21 4 2 39 39 H 1.09001 * 117.49416 * 359.97438 * 21 4 2 40 40 H 1.09003 * 117.49760 * 252.51485 * 22 21 4 41 41 H 1.09001 * 117.50122 * 107.48928 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6987 -0.0530 2.5827 6 7 2.7674 0.8797 2.9491 7 6 2.7126 1.5608 4.1674 8 6 1.6408 1.3528 5.0331 9 6 1.5769 2.0224 6.2436 10 6 2.5701 2.9059 6.6026 11 6 3.6616 3.1222 5.7407 12 6 4.6880 4.0241 6.1052 13 1 5.2842 4.5010 5.3413 14 6 4.9312 4.2986 7.4556 15 7 4.4348 3.5187 8.3814 16 14 5.9647 5.7785 7.9365 17 1 5.3220 7.0171 7.4287 18 1 6.0728 5.8471 9.4159 19 1 7.3215 5.6473 7.3470 20 6 3.7221 2.4405 4.5126 21 6 2.0810 -2.2503 1.2156 22 6 3.3823 -1.4484 1.1468 23 1 -0.3633 -1.0227 0.1010 24 1 -0.3633 0.5989 0.8351 25 1 -0.3633 0.4239 -0.9362 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9564 0.8899 30 1 1.6001 -0.8146 3.3561 31 1 0.7590 0.4909 2.4864 32 1 3.5130 1.0242 2.3458 33 1 0.8548 0.6650 4.7583 34 1 0.7416 1.8543 6.9072 35 1 2.5135 3.4291 7.5457 36 1 4.6037 3.7088 9.3174 37 1 4.5531 2.6029 3.8421 38 1 1.8649 -2.7802 2.1433 39 1 1.7443 -2.7428 0.3033 40 1 3.9018 -1.4133 0.1892 41 1 4.0222 -1.4507 2.0292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602682972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:40 Heat of formation + Delta-G solvation = 13.047728 kcal Electronic energy + Delta-G solvation = -19061.839439 eV Core-core repulsion = 16326.613654 eV Total energy + Delta-G solvation = -2735.225785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.37704 -39.17569 -36.23764 -34.57374 -34.23084 -31.67708 -30.05361 -28.04712 -27.13063 -26.61838 -23.53259 -23.19863 -22.63349 -21.89730 -19.49539 -19.08868 -17.31675 -16.93229 -16.72497 -16.33393 -16.04809 -15.55381 -14.78869 -14.64700 -14.32947 -14.28546 -13.99288 -13.92835 -13.50978 -13.27575 -12.99944 -12.85374 -12.77277 -12.47961 -12.34804 -12.15686 -12.09499 -12.04696 -11.70482 -11.38879 -11.18894 -11.09720 -10.96009 -10.68449 -10.39752 -9.32379 -8.58080 -7.89640 -6.32665 1.06085 1.35975 1.39484 1.50865 1.61195 2.23280 2.56921 2.82597 3.15520 3.65333 3.77923 3.87241 3.92078 4.06505 4.40460 4.45460 4.52062 4.55851 4.71265 4.73821 4.79994 4.84466 4.84849 5.00623 5.03979 5.09141 5.13754 5.14492 5.17393 5.25967 5.28725 5.36484 5.43385 5.45183 5.54981 5.61775 5.96040 6.03776 6.21041 6.33062 6.64761 6.91337 7.03268 7.07541 7.27684 8.39422 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.033443 B = 0.004201 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.042560 B = 6663.348460 C = 6844.701762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C -0.146 4.146 4 C -0.137 4.137 5 C 0.174 3.826 6 N -0.744 5.744 7 C 0.235 3.765 8 C -0.305 4.305 9 C -0.076 4.076 10 C -0.232 4.232 11 C 0.113 3.887 12 C -0.503 4.503 13 H 0.072 0.928 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.260 1.260 20 C -0.311 4.311 21 C -0.152 4.152 22 C -0.172 4.172 23 H 0.063 0.937 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.394 0.606 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.286 0.714 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 -7.577 -13.808 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.067 4.067 3 C -0.203 4.203 4 C -0.137 4.137 5 C 0.050 3.950 6 N -0.376 5.376 7 C 0.133 3.867 8 C -0.328 4.328 9 C -0.095 4.095 10 C -0.253 4.253 11 C 0.110 3.890 12 C -0.533 4.533 13 H 0.090 0.910 14 C -0.179 4.179 15 N -0.453 5.453 16 Si 0.804 3.196 17 H -0.185 1.185 18 H -0.191 1.191 19 H -0.184 1.184 20 C -0.336 4.336 21 C -0.189 4.189 22 C -0.210 4.210 23 H 0.082 0.918 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.228 0.772 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.757 -7.750 -13.560 16.327 hybrid contribution 0.805 0.717 0.527 1.200 sum -3.953 -7.034 -13.033 15.328 Atomic orbital electron populations 1.21814 0.94490 1.02161 1.01688 1.20613 0.96037 0.95235 0.94851 1.21821 1.00775 0.96273 1.01472 1.21672 1.02417 0.94429 0.95205 1.20616 0.90176 0.90897 0.93330 1.44531 1.26828 1.48046 1.18188 1.17537 0.93006 0.90269 0.85869 1.20141 1.02200 1.12353 0.98101 1.20726 0.97273 0.95838 0.95647 1.21142 0.96343 1.05693 1.02088 1.17705 0.91334 0.89235 0.90750 1.19791 1.16225 1.24199 0.93064 0.91024 1.26764 0.96441 0.98939 0.95804 1.69914 1.38142 1.34842 1.02364 0.85252 0.78690 0.77870 0.77828 1.18519 1.19089 1.18426 1.20500 1.02197 1.08773 1.02096 1.23096 1.00388 0.91461 1.03995 1.22998 0.90602 1.04137 1.03233 0.91763 0.93801 0.91720 0.89747 0.93154 0.91861 0.94023 0.94016 0.93045 0.77156 0.87369 0.87554 0.88394 0.90340 0.89332 0.88987 0.86659 0.87386 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.95 71.98 0.64 -1.89 16 2 C -0.05 -0.92 2.74 -10.79 -0.03 -0.95 16 3 C -0.15 -3.19 8.37 71.98 0.60 -2.59 16 4 C -0.14 -2.94 1.18 -52.18 -0.06 -3.01 16 5 C 0.17 5.03 4.08 86.38 0.35 5.38 16 6 N -0.74 -26.29 4.78 -339.59 -1.62 -27.92 16 7 C 0.23 10.73 6.64 38.17 0.25 10.98 16 8 C -0.30 -14.02 9.31 22.59 0.21 -13.81 16 9 C -0.08 -3.76 10.02 22.20 0.22 -3.54 16 10 C -0.23 -13.02 8.69 22.75 0.20 -12.82 16 11 C 0.11 6.47 5.57 -21.31 -0.12 6.35 16 12 C -0.50 -28.59 9.06 23.46 0.21 -28.38 16 13 H 0.07 3.93 7.89 -2.91 -0.02 3.91 16 14 C 0.03 1.84 5.19 85.25 0.44 2.28 16 15 N -0.83 -45.25 10.85 21.82 0.24 -45.02 16 16 Si 0.98 39.73 29.59 68.60 2.03 41.76 16 17 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 18 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 20 C -0.31 -16.19 9.63 22.86 0.22 -15.97 16 21 C -0.15 -2.74 9.90 30.60 0.30 -2.43 16 22 C -0.17 -3.53 9.47 30.60 0.29 -3.24 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.04 0.90 6.89 -2.39 -0.02 0.89 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 1.12 7.00 -2.39 -0.02 1.11 16 30 H 0.04 1.28 7.51 -2.39 -0.02 1.26 16 31 H 0.05 1.54 6.49 -2.39 -0.02 1.52 16 32 H 0.39 13.10 7.87 -92.71 -0.73 12.37 16 33 H 0.11 4.39 6.70 -2.91 -0.02 4.37 16 34 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 35 H 0.10 5.74 6.11 -2.91 -0.02 5.72 16 36 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 37 H 0.09 4.43 8.06 -2.91 -0.02 4.40 16 38 H 0.09 1.73 8.03 -2.39 -0.02 1.71 16 39 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -61.78 329.33 4.66 -57.12 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: 0.27 Total: 37.70 kcal Atomic # 6 Polarization: -67.39 SS G_CDS: 3.74 Total: -63.64 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -1.39 Total: -72.93 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -61.78 4.66 -57.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602682972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.166 kcal (2) G-P(sol) polarization free energy of solvation -61.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds