Wall clock time and date at job start Mon Mar 30 2020 07:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09001 * 109.47317 * 55.00458 * 3 2 1 5 5 C 1.50710 * 109.46737 * 174.99856 * 3 2 1 6 6 H 1.08000 * 119.99588 * 120.00132 * 5 3 2 7 7 C 1.37869 * 119.99939 * 300.00043 * 5 3 2 8 8 N 1.31518 * 120.00511 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46911 * 60.00376 * 9 7 5 11 11 H 1.48502 * 109.47326 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47169 * 300.00435 * 9 7 5 13 13 N 1.46492 * 109.47631 * 294.99736 * 3 2 1 14 14 C 1.39678 * 120.00067 * 84.99999 * 13 3 2 15 15 C 1.38933 * 120.07005 * 0.02562 * 14 13 3 16 16 C 1.38085 * 119.92082 * 179.97438 * 15 14 13 17 17 C 1.38309 * 120.07941 * 359.97438 * 16 15 14 18 18 C 1.38266 * 120.14361 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.95805 * 180.02562 * 18 17 16 20 20 C 1.53784 * 113.61423 * 39.13351 * 19 18 17 21 21 C 1.53953 * 87.02188 * 220.04671 * 20 19 18 22 22 C 1.53784 * 113.61498 * 301.52865 * 19 18 17 23 23 C 1.38118 * 120.07983 * 359.74435 * 18 17 16 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 29 29 H 0.96995 * 120.00483 * 179.97438 * 8 7 5 30 30 H 0.96998 * 120.00524 * 265.00950 * 13 3 2 31 31 H 1.07997 * 120.04134 * 359.97438 * 15 14 13 32 32 H 1.08011 * 119.95873 * 179.97438 * 16 15 14 33 33 H 1.07994 * 119.92478 * 180.02562 * 17 16 15 34 34 H 1.08997 * 112.84881 * 170.32982 * 19 18 17 35 35 H 1.08995 * 113.61612 * 334.57084 * 20 19 18 36 36 H 1.09003 * 113.61004 * 105.47213 * 20 19 18 37 37 H 1.08996 * 113.54000 * 270.81472 * 21 20 19 38 38 H 1.08993 * 113.74400 * 139.93931 * 21 20 19 39 39 H 1.09000 * 113.61063 * 254.52861 * 22 19 18 40 40 H 1.09003 * 113.61010 * 25.43030 * 22 19 18 41 41 H 1.08001 * 120.04493 * 180.27787 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8801 1.3812 10 1 6.5004 2.2801 1.3809 11 1 6.3978 0.2169 2.6504 12 1 6.5967 0.1455 0.2343 13 7 1.6524 2.0975 -1.2517 14 6 0.3909 2.6850 -1.3711 15 6 -0.4975 2.6495 -0.3035 16 6 -1.7437 3.2317 -0.4247 17 6 -2.1078 3.8502 -1.6070 18 6 -1.2261 3.8873 -2.6714 19 6 -1.6270 4.5628 -3.9575 20 6 -2.4322 5.8563 -3.7490 21 6 -3.3032 5.4106 -4.9376 22 6 -2.8928 3.9682 -4.5971 23 6 0.0238 3.3111 -2.5554 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.8293 -0.0618 2.9495 30 1 2.2719 2.1232 -1.9977 31 1 -0.2137 2.1671 0.6201 32 1 -2.4349 3.2040 0.4048 33 1 -3.0830 4.3051 -1.6990 34 1 -0.7962 4.6732 -4.6544 35 1 -2.9699 5.8879 -2.8014 36 1 -1.8592 6.7632 -3.9422 37 1 -2.9311 5.7541 -5.9028 38 1 -4.3666 5.6059 -4.8001 39 1 -2.6911 3.3530 -5.4741 40 1 -3.5566 3.4826 -3.8818 41 1 0.7137 3.3443 -3.3856 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690134519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:46 Heat of formation + Delta-G solvation = 35.383696 kcal Electronic energy + Delta-G solvation = -19229.239037 eV Core-core repulsion = 16494.981813 eV Total energy + Delta-G solvation = -2734.257224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.71276 -38.07208 -35.59783 -32.71533 -31.37339 -30.37653 -28.77218 -26.13750 -25.55058 -25.20384 -22.99853 -21.83937 -21.31820 -19.50893 -18.62754 -17.17177 -16.38138 -15.43453 -15.23618 -15.04731 -14.43223 -14.15491 -13.73964 -13.31995 -13.02817 -12.76766 -12.55908 -12.41983 -12.18208 -11.78558 -11.46974 -11.29713 -11.20933 -10.94781 -10.89574 -10.83004 -10.40467 -10.30294 -10.27613 -10.17813 -9.96324 -9.61650 -9.21326 -8.94422 -8.45296 -8.07816 -6.42469 -6.15998 -4.24354 2.02265 2.30497 3.23915 3.28948 3.30975 4.25792 4.42095 4.58044 4.70069 4.76585 4.80928 5.14126 5.15740 5.37486 5.48029 5.67946 5.72828 5.73382 5.82766 5.87876 5.97040 6.01438 6.13947 6.22542 6.25417 6.35807 6.45836 6.51599 6.57401 6.62791 6.93505 6.99363 7.09049 7.15742 7.24744 7.27969 7.45471 7.60651 7.71334 7.85525 8.10372 8.40858 8.73942 8.93592 9.42697 10.89171 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.036491 B = 0.004354 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.132183 B = 6429.155754 C = 6784.541752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.273 3.727 4 H 0.040 0.960 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.725 5.725 14 C 0.239 3.761 15 C -0.203 4.203 16 C -0.076 4.076 17 C -0.200 4.200 18 C -0.030 4.030 19 C -0.070 4.070 20 C -0.133 4.133 21 C -0.145 4.145 22 C -0.130 4.130 23 C -0.216 4.216 24 H 0.027 0.973 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.033 0.967 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.132 0.868 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 6.178 -9.222 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.171 3.829 4 H 0.057 0.943 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.347 5.347 14 C 0.130 3.870 15 C -0.226 4.226 16 C -0.095 4.095 17 C -0.221 4.221 18 C -0.030 4.030 19 C -0.088 4.088 20 C -0.170 4.170 21 C -0.182 4.182 22 C -0.167 4.167 23 C -0.240 4.240 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.221 0.779 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.503 5.956 -8.818 14.951 hybrid contribution 1.315 -0.125 -0.119 1.327 sum -9.187 5.831 -8.937 14.081 Atomic orbital electron populations 1.22203 0.98959 0.99048 1.00638 1.22022 0.92243 1.00409 1.02458 1.18717 0.94371 0.88729 0.81118 0.94267 1.21200 0.90908 1.38688 1.06149 0.92238 1.24867 0.98613 0.94762 0.95384 1.69856 1.35238 1.37803 1.09434 0.86522 0.84910 0.78344 0.77434 1.20182 1.21107 1.20187 1.45534 1.12224 1.59151 1.17802 1.17994 0.86398 0.89732 0.92888 1.21066 0.94762 1.07022 0.99738 1.20758 0.95671 0.96312 0.96799 1.20417 0.99840 1.07560 0.94288 1.19214 0.93255 0.96465 0.94092 1.21460 0.96770 0.95716 0.94871 1.23047 0.98134 0.97071 0.98778 1.22875 0.99724 0.97072 0.98546 1.22962 0.97219 0.96115 1.00439 1.20352 0.97861 1.08247 0.97542 0.95354 0.93425 0.93178 0.88342 0.94802 0.92524 0.77907 0.85061 0.87248 0.87653 0.89209 0.89599 0.91742 0.90525 0.91710 0.91759 0.89801 0.87371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.22 37.16 0.31 -2.77 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.60 2.20 -69.08 -0.15 6.45 16 4 H 0.04 1.05 6.48 -51.93 -0.34 0.71 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.89 -24.17 11.29 55.43 0.63 -23.55 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.73 -15.24 5.18 -53.29 -0.28 -15.51 16 14 C 0.24 4.65 5.48 -83.78 -0.46 4.19 16 15 C -0.20 -3.88 6.72 -39.38 -0.26 -4.14 16 16 C -0.08 -1.27 10.04 -39.61 -0.40 -1.66 16 17 C -0.20 -3.07 8.53 -39.54 -0.34 -3.40 16 18 C -0.03 -0.45 5.29 -104.66 -0.55 -1.01 16 19 C -0.07 -0.86 3.97 -90.96 -0.36 -1.22 16 20 C -0.13 -1.43 7.47 -25.83 -0.19 -1.62 16 21 C -0.14 -1.35 8.09 -25.83 -0.21 -1.56 16 22 C -0.13 -1.41 7.54 -25.91 -0.20 -1.60 16 23 C -0.22 -3.74 9.56 -39.38 -0.38 -4.12 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.95 6.35 -51.93 -0.33 0.62 16 26 H 0.05 1.00 5.39 -51.93 -0.28 0.72 16 27 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.39 7.70 8.55 -40.82 -0.35 7.35 16 31 H 0.13 2.69 4.01 -52.49 -0.21 2.48 16 32 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 33 H 0.11 1.39 6.72 -52.49 -0.35 1.04 16 34 H 0.09 1.07 8.08 -51.93 -0.42 0.65 16 35 H 0.09 0.94 6.39 -51.93 -0.33 0.61 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.94 7.64 -51.93 -0.40 0.55 16 41 H 0.11 1.73 8.05 -52.49 -0.42 1.30 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -26.59 316.48 -9.87 -36.46 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.24 Total: 10.55 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -3.73 Total: -28.29 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.35 Total: -39.06 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.59 -9.87 -36.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690134519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.846 kcal (2) G-P(sol) polarization free energy of solvation -26.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds