Wall clock time and date at job start Mon Mar 30 2020 07:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09001 * 109.47317 * 55.00458 * 3 2 1 5 5 C 1.50710 * 109.46737 * 174.99856 * 3 2 1 6 6 H 1.08000 * 119.99588 * 120.00132 * 5 3 2 7 7 C 1.37869 * 119.99939 * 300.00043 * 5 3 2 8 8 N 1.31518 * 120.00511 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46911 * 60.00376 * 9 7 5 11 11 H 1.48502 * 109.47326 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47169 * 300.00435 * 9 7 5 13 13 N 1.46492 * 109.47631 * 294.99736 * 3 2 1 14 14 C 1.39678 * 120.00067 * 84.99999 * 13 3 2 15 15 C 1.38933 * 120.07005 * 0.02562 * 14 13 3 16 16 C 1.38085 * 119.92082 * 179.97438 * 15 14 13 17 17 C 1.38309 * 120.07941 * 359.97438 * 16 15 14 18 18 C 1.38266 * 120.14361 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.95805 * 180.02562 * 18 17 16 20 20 C 1.53784 * 113.61423 * 39.13351 * 19 18 17 21 21 C 1.53953 * 87.02188 * 220.04671 * 20 19 18 22 22 C 1.53784 * 113.61498 * 301.52865 * 19 18 17 23 23 C 1.38118 * 120.07983 * 359.74435 * 18 17 16 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 29 29 H 0.96995 * 120.00483 * 179.97438 * 8 7 5 30 30 H 0.96998 * 120.00524 * 265.00950 * 13 3 2 31 31 H 1.07997 * 120.04134 * 359.97438 * 15 14 13 32 32 H 1.08011 * 119.95873 * 179.97438 * 16 15 14 33 33 H 1.07994 * 119.92478 * 180.02562 * 17 16 15 34 34 H 1.08997 * 112.84881 * 170.32982 * 19 18 17 35 35 H 1.08995 * 113.61612 * 334.57084 * 20 19 18 36 36 H 1.09003 * 113.61004 * 105.47213 * 20 19 18 37 37 H 1.08996 * 113.54000 * 270.81472 * 21 20 19 38 38 H 1.08993 * 113.74400 * 139.93931 * 21 20 19 39 39 H 1.09000 * 113.61063 * 254.52861 * 22 19 18 40 40 H 1.09003 * 113.61010 * 25.43030 * 22 19 18 41 41 H 1.08001 * 120.04493 * 180.27787 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8801 1.3812 10 1 6.5004 2.2801 1.3809 11 1 6.3978 0.2169 2.6504 12 1 6.5967 0.1455 0.2343 13 7 1.6524 2.0975 -1.2517 14 6 0.3909 2.6850 -1.3711 15 6 -0.4975 2.6495 -0.3035 16 6 -1.7437 3.2317 -0.4247 17 6 -2.1078 3.8502 -1.6070 18 6 -1.2261 3.8873 -2.6714 19 6 -1.6270 4.5628 -3.9575 20 6 -2.4322 5.8563 -3.7490 21 6 -3.3032 5.4106 -4.9376 22 6 -2.8928 3.9682 -4.5971 23 6 0.0238 3.3111 -2.5554 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.8293 -0.0618 2.9495 30 1 2.2719 2.1232 -1.9977 31 1 -0.2137 2.1671 0.6201 32 1 -2.4349 3.2040 0.4048 33 1 -3.0830 4.3051 -1.6990 34 1 -0.7962 4.6732 -4.6544 35 1 -2.9699 5.8879 -2.8014 36 1 -1.8592 6.7632 -3.9422 37 1 -2.9311 5.7541 -5.9028 38 1 -4.3666 5.6059 -4.8001 39 1 -2.6911 3.3530 -5.4741 40 1 -3.5566 3.4826 -3.8818 41 1 0.7137 3.3443 -3.3856 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690134519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:46 Heat of formation + Delta-G solvation = 23.315962 kcal Electronic energy + Delta-G solvation = -19229.762333 eV Core-core repulsion = 16494.981813 eV Total energy + Delta-G solvation = -2734.780521 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90818 -39.30418 -37.16746 -34.53892 -33.04827 -31.72757 -30.37385 -27.91716 -26.38205 -26.25824 -24.85024 -23.18572 -22.72250 -20.95891 -19.81790 -18.88622 -17.81213 -17.02320 -16.59617 -16.36827 -15.97290 -15.47803 -15.26488 -14.77091 -14.45751 -14.31899 -13.81419 -13.53359 -13.27612 -13.25424 -13.16057 -12.94411 -12.78067 -12.60762 -12.40708 -12.08396 -12.02400 -11.87670 -11.55910 -11.26381 -11.24909 -11.02177 -10.92777 -10.68674 -10.36612 -9.39816 -8.19303 -7.95411 -6.33387 0.68394 0.94364 1.41514 1.42274 1.50196 2.36734 2.99325 3.09272 3.13202 3.83259 3.86718 3.95809 4.19790 4.24765 4.29079 4.40942 4.54003 4.62564 4.70848 4.71824 4.83344 4.86793 4.93912 4.98321 5.01233 5.12749 5.16464 5.17783 5.28036 5.29328 5.39533 5.40960 5.56704 5.63377 5.64825 5.70518 5.85700 5.87596 5.99909 6.16116 6.29003 6.58565 6.90249 7.25481 7.39615 8.86358 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.036491 B = 0.004354 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.132183 B = 6429.155754 C = 6784.541752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C 0.285 3.715 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.058 0.942 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.963 3.037 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.270 1.270 13 N -0.733 5.733 14 C 0.215 3.785 15 C -0.224 4.224 16 C -0.078 4.078 17 C -0.191 4.191 18 C -0.026 4.026 19 C -0.079 4.079 20 C -0.132 4.132 21 C -0.132 4.132 22 C -0.129 4.129 23 C -0.222 4.222 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.391 0.609 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.912 7.291 -10.772 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 C 0.181 3.819 4 H 0.025 0.975 5 C -0.590 4.590 6 H 0.076 0.924 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.788 3.212 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.195 1.195 13 N -0.357 5.357 14 C 0.109 3.891 15 C -0.247 4.247 16 C -0.097 4.097 17 C -0.211 4.211 18 C -0.027 4.027 19 C -0.098 4.098 20 C -0.170 4.170 21 C -0.169 4.169 22 C -0.167 4.167 23 C -0.245 4.245 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.224 0.776 31 H 0.127 0.873 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.828 7.089 -10.390 17.266 hybrid contribution 1.609 -0.393 0.321 1.687 sum -10.219 6.696 -10.069 15.832 Atomic orbital electron populations 1.22037 0.96623 0.99992 1.00705 1.21851 0.94300 0.99589 1.00654 1.18327 0.93174 0.88870 0.81565 0.97507 1.21558 0.92273 1.38781 1.06361 0.92373 1.25645 1.02875 0.94399 0.95074 1.69986 1.36832 1.38292 1.09780 0.85535 0.79760 0.78334 0.77533 1.19897 1.20696 1.19529 1.45224 1.13299 1.60408 1.16780 1.18213 0.85899 0.90927 0.94087 1.21017 0.96147 1.08532 0.99005 1.21042 0.94928 0.95541 0.98157 1.20769 1.00836 1.06127 0.93408 1.19625 0.92273 0.95262 0.95552 1.21615 0.97770 0.96896 0.93477 1.23061 0.98085 0.96284 0.99539 1.22834 1.00328 0.95370 0.98413 1.22965 0.96065 0.97245 1.00400 1.20566 0.98989 1.07974 0.96973 0.93797 0.93642 0.92834 0.91039 0.95420 0.92531 0.77581 0.87308 0.85079 0.84825 0.88862 0.89643 0.91223 0.89389 0.90389 0.91262 0.90105 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.22 71.98 0.59 -5.06 16 2 C -0.12 -6.03 5.45 30.60 0.17 -5.86 16 3 C 0.28 14.34 2.20 44.25 0.10 14.44 16 4 H 0.01 0.40 6.48 -2.39 -0.02 0.39 16 5 C -0.55 -29.86 8.73 25.60 0.22 -29.64 16 6 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -51.14 11.29 21.44 0.24 -50.90 16 9 Si 0.96 42.72 29.54 68.60 2.03 44.75 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 N -0.73 -31.79 5.18 -322.50 -1.67 -33.46 16 14 C 0.22 8.49 5.48 38.21 0.21 8.70 16 15 C -0.22 -8.68 6.72 22.40 0.15 -8.53 16 16 C -0.08 -2.48 10.04 22.25 0.22 -2.26 16 17 C -0.19 -5.38 8.53 22.29 0.19 -5.19 16 18 C -0.03 -0.76 5.29 -19.89 -0.11 -0.87 16 19 C -0.08 -1.74 3.97 -11.01 -0.04 -1.79 16 20 C -0.13 -2.40 7.47 31.18 0.23 -2.17 16 21 C -0.13 -1.96 8.09 31.18 0.25 -1.71 16 22 C -0.13 -2.38 7.54 31.12 0.23 -2.15 16 23 C -0.22 -7.51 9.56 22.40 0.21 -7.29 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.04 1.87 6.35 -2.39 -0.02 1.86 16 26 H 0.05 2.17 5.39 -2.39 -0.01 2.16 16 27 H 0.07 3.85 5.95 -2.39 -0.01 3.84 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.39 16.00 8.55 -92.71 -0.79 15.20 16 31 H 0.11 4.67 4.01 -2.91 -0.01 4.66 16 32 H 0.13 3.51 8.06 -2.90 -0.02 3.49 16 33 H 0.13 3.02 6.72 -2.91 -0.02 3.00 16 34 H 0.09 2.00 8.08 -2.39 -0.02 1.98 16 35 H 0.09 1.56 6.39 -2.39 -0.02 1.54 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.55 7.64 -2.39 -0.02 1.53 16 41 H 0.12 3.66 8.05 -2.91 -0.02 3.64 16 Total: -1.00 -57.90 316.48 3.91 -53.99 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.23 Total: 33.44 kcal Atomic # 6 Polarization: -50.90 SS G_CDS: 3.09 Total: -47.82 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -1.43 Total: -84.35 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -57.90 3.91 -53.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690134519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.304 kcal (2) G-P(sol) polarization free energy of solvation -57.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds