Wall clock time and date at job start Mon Mar 30 2020 07:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46737 * 2 1 4 4 C 1.53002 * 109.46998 * 119.99614 * 2 1 3 5 5 C 1.50698 * 109.46852 * 189.35197 * 4 2 1 6 6 H 1.07994 * 120.00278 * 4.80397 * 5 4 2 7 7 C 1.37883 * 119.99997 * 184.79766 * 5 4 2 8 8 N 1.31516 * 119.99587 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00199 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46797 * 89.99921 * 9 7 5 11 11 H 1.48497 * 109.47409 * 210.00268 * 9 7 5 12 12 H 1.48497 * 109.47165 * 330.00449 * 9 7 5 13 13 N 1.46897 * 109.47144 * 240.00020 * 2 1 3 14 14 C 1.46423 * 111.00042 * 83.15571 * 13 2 1 15 15 C 1.53382 * 108.66187 * 72.25401 * 14 13 2 16 16 H 1.08994 * 109.77505 * 308.60751 * 15 14 13 17 17 C 1.53001 * 109.76975 * 187.87487 * 15 14 13 18 18 C 1.53043 * 107.92020 * 68.26995 * 15 14 13 19 19 C 1.50805 * 109.64556 * 312.68337 * 18 15 14 20 20 C 1.38622 * 118.11679 * 195.43219 * 19 18 15 21 21 C 1.38047 * 120.48831 * 180.35905 * 20 19 18 22 22 C 1.38315 * 119.88615 * 359.97438 * 21 20 19 23 23 C 1.37809 * 119.95643 * 359.86999 * 22 21 20 24 24 C 1.38365 * 122.01881 * 15.55694 * 19 18 15 25 25 H 1.08997 * 109.47158 * 60.00171 * 1 2 3 26 26 H 1.09006 * 109.46821 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47329 * 299.99875 * 1 2 3 28 28 H 1.08992 * 109.47232 * 309.35471 * 4 2 1 29 29 H 1.09003 * 109.46575 * 69.35606 * 4 2 1 30 30 H 0.97004 * 119.99497 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.60459 * 312.50080 * 14 13 2 32 32 H 1.09001 * 109.60521 * 192.00985 * 14 13 2 33 33 H 1.09000 * 109.47601 * 59.99755 * 17 15 14 34 34 H 1.09009 * 109.46951 * 299.99924 * 17 15 14 35 35 H 1.08997 * 109.47356 * 180.02562 * 17 15 14 36 36 H 1.09000 * 109.44305 * 72.73289 * 18 15 14 37 37 H 1.08993 * 109.44425 * 192.62336 * 18 15 14 38 38 H 1.08000 * 119.75324 * 0.37948 * 20 19 18 39 39 H 1.07997 * 120.05989 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.02601 * 179.89457 * 22 21 20 41 41 H 1.07994 * 119.79580 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5292 -0.5243 1.3702 6 1 4.0469 0.1199 0.6751 7 6 4.2307 -1.1668 2.3683 8 7 3.6003 -1.9517 3.2145 9 14 6.0765 -0.9223 2.5186 10 1 6.3518 0.2328 3.4104 11 1 6.6932 -2.1465 3.0895 12 1 6.6519 -0.6585 1.1753 13 7 2.0197 -0.6925 -1.1994 14 6 2.0410 0.2084 -2.3535 15 6 3.1880 1.2105 -2.1728 16 1 3.1187 1.6771 -1.1902 17 6 3.1144 2.2832 -3.2613 18 6 4.5068 0.4430 -2.2906 19 6 4.4456 -0.8032 -1.4436 20 6 5.6338 -1.4569 -1.1564 21 6 5.6338 -2.6061 -0.3916 22 6 4.4410 -3.1112 0.0935 23 6 3.2562 -2.4651 -0.1852 24 6 3.2500 -1.3017 -0.9573 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.5467 -0.3129 2.1313 29 1 1.8194 -1.7857 1.1697 30 1 4.0939 -2.4039 3.9165 31 1 1.0938 0.7442 -2.4168 32 1 2.1993 -0.3683 -3.2648 33 1 2.1620 2.8085 -3.1900 34 1 3.1975 1.8128 -4.2411 35 1 3.9316 2.9922 -3.1286 36 1 4.6738 0.1662 -3.3316 37 1 5.3262 1.0748 -1.9480 38 1 6.5665 -1.0639 -1.5335 39 1 6.5635 -3.1100 -0.1724 40 1 4.4382 -4.0111 0.6906 41 1 2.3264 -2.8614 0.1952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695840406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:34 Heat of formation + Delta-G solvation = 39.486143 kcal Electronic energy + Delta-G solvation = -21219.712602 eV Core-core repulsion = 18485.633273 eV Total energy + Delta-G solvation = -2734.079329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34156 -36.43274 -35.21660 -32.49388 -30.85529 -30.43815 -29.21182 -26.88513 -25.94337 -24.35683 -22.78274 -21.42312 -20.90518 -20.53412 -17.98335 -16.38644 -15.75530 -15.40357 -15.23512 -14.54354 -14.36968 -13.53521 -13.30257 -13.19105 -12.85082 -12.47692 -12.25907 -12.09440 -11.92163 -11.76935 -11.61612 -11.42171 -11.13535 -10.94997 -10.74490 -10.57116 -10.55662 -10.38958 -10.09044 -9.84604 -9.74929 -9.03315 -9.00644 -8.28385 -8.22390 -7.36846 -6.76946 -5.93112 -3.81159 2.49729 2.61183 3.39992 3.45913 3.55476 4.52953 4.58215 4.95598 5.10362 5.19676 5.28936 5.48819 5.71458 5.76899 5.83966 5.90076 5.92513 5.96878 6.02214 6.10587 6.12389 6.13170 6.17513 6.27961 6.35842 6.46881 6.50769 6.64619 6.67720 6.79999 6.88725 6.99506 7.13998 7.31678 7.48183 7.61741 7.68281 7.74726 7.91049 8.04574 8.10425 8.40852 8.49938 9.09801 9.72689 11.17657 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.019664 B = 0.010991 C = 0.009069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.576102 B = 2547.014656 C = 3086.636907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.043 0.957 4 C 0.006 3.994 5 C -0.504 4.504 6 H 0.060 0.940 7 C 0.076 3.924 8 N -0.890 5.890 9 Si 0.867 3.133 10 H -0.294 1.294 11 H -0.290 1.290 12 H -0.256 1.256 13 N -0.498 5.498 14 C 0.066 3.934 15 C -0.132 4.132 16 H 0.079 0.921 17 C -0.139 4.139 18 C -0.062 4.062 19 C -0.133 4.133 20 C -0.115 4.115 21 C -0.141 4.141 22 C -0.108 4.108 23 C -0.035 4.035 24 C 0.161 3.839 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.017 0.983 29 H 0.043 0.957 30 H 0.257 0.743 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.283 3.052 -10.554 11.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.061 0.939 4 C -0.031 4.031 5 C -0.542 4.542 6 H 0.078 0.922 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.696 3.304 10 H -0.221 1.221 11 H -0.216 1.216 12 H -0.180 1.180 13 N -0.215 5.215 14 C -0.062 4.062 15 C -0.152 4.152 16 H 0.097 0.903 17 C -0.197 4.197 18 C -0.099 4.099 19 C -0.136 4.136 20 C -0.134 4.134 21 C -0.160 4.160 22 C -0.127 4.127 23 C -0.054 4.054 24 C 0.065 3.935 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.642 2.595 -10.502 10.942 hybrid contribution 1.798 0.823 0.698 2.097 sum 0.156 3.418 -9.804 10.384 Atomic orbital electron populations 1.21820 0.96179 1.01551 0.99893 1.21927 0.93324 0.96361 0.90651 0.93925 1.19756 0.96081 0.97091 0.90190 1.21234 0.92423 1.27173 1.13345 0.92220 1.24667 0.97163 0.95172 0.95513 1.69947 1.35418 1.30317 1.17255 0.86983 0.87535 0.77061 0.78837 1.22109 1.21606 1.17983 1.58875 1.24904 1.32222 1.05500 1.22177 0.97240 0.92974 0.93845 1.21806 0.96864 0.96473 1.00021 0.90322 1.21729 1.01265 0.98290 0.98365 1.20407 0.96963 0.94237 0.98277 1.19401 0.92903 0.97036 1.04253 1.20428 0.95912 0.96462 1.00557 1.20583 0.97061 0.97664 1.00718 1.20482 0.92524 1.00142 0.99560 1.20688 0.97716 0.92815 0.94174 1.17850 0.86638 0.93382 0.95590 0.94176 0.92530 0.92913 0.96478 0.93905 0.93361 0.91041 0.91204 0.92898 0.92895 0.93019 0.92014 0.91908 0.88562 0.88538 0.87922 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.37 37.16 0.35 -1.98 16 2 C 0.08 1.66 2.25 -67.71 -0.15 1.50 16 3 H 0.04 0.89 6.10 -51.93 -0.32 0.57 16 4 C 0.01 0.13 3.97 -27.88 -0.11 0.02 16 5 C -0.50 -13.14 5.20 -34.44 -0.18 -13.32 16 6 H 0.06 1.60 5.74 -52.49 -0.30 1.30 16 7 C 0.08 2.07 3.83 -17.82 -0.07 2.00 16 8 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 9 Si 0.87 21.77 27.12 -169.99 -4.61 17.16 16 10 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.26 -6.22 5.92 56.52 0.33 -5.88 16 13 N -0.50 -9.55 4.37 -163.74 -0.72 -10.27 16 14 C 0.07 1.05 5.03 -3.89 -0.02 1.03 16 15 C -0.13 -2.05 2.76 -90.40 -0.25 -2.30 16 16 H 0.08 1.42 6.35 -51.93 -0.33 1.09 16 17 C -0.14 -1.68 9.20 37.16 0.34 -1.34 16 18 C -0.06 -1.03 5.15 -27.81 -0.14 -1.17 16 19 C -0.13 -2.66 4.18 -104.38 -0.44 -3.10 16 20 C -0.11 -2.32 8.74 -39.51 -0.35 -2.66 16 21 C -0.14 -2.94 7.62 -39.62 -0.30 -3.24 16 22 C -0.11 -2.35 8.09 -39.71 -0.32 -2.67 16 23 C -0.03 -0.77 6.06 -39.22 -0.24 -1.01 16 24 C 0.16 3.38 3.25 -83.85 -0.27 3.10 16 25 H 0.04 0.60 7.22 -51.93 -0.37 0.22 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.04 1.10 5.06 -51.93 -0.26 0.84 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.07 1.03 7.07 -51.93 -0.37 0.66 16 32 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.12 2.66 6.15 -52.49 -0.32 2.33 16 LS Contribution 298.94 15.07 4.50 4.50 Total: -1.00 -27.92 298.94 -8.78 -36.70 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.55 Total: 1.65 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -2.15 Total: -25.13 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.02 Total: -34.88 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.61 Total: 17.16 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.92 -8.78 -36.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.181 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds