Wall clock time and date at job start Mon Mar 30 2020 07:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46737 * 2 1 4 4 C 1.53002 * 109.46998 * 119.99614 * 2 1 3 5 5 C 1.50698 * 109.46852 * 189.35197 * 4 2 1 6 6 H 1.07994 * 120.00278 * 4.80397 * 5 4 2 7 7 C 1.37883 * 119.99997 * 184.79766 * 5 4 2 8 8 N 1.31516 * 119.99587 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00199 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46797 * 89.99921 * 9 7 5 11 11 H 1.48497 * 109.47409 * 210.00268 * 9 7 5 12 12 H 1.48497 * 109.47165 * 330.00449 * 9 7 5 13 13 N 1.46897 * 109.47144 * 240.00020 * 2 1 3 14 14 C 1.46423 * 111.00042 * 83.15571 * 13 2 1 15 15 C 1.53382 * 108.66187 * 72.25401 * 14 13 2 16 16 H 1.08994 * 109.77505 * 308.60751 * 15 14 13 17 17 C 1.53001 * 109.76975 * 187.87487 * 15 14 13 18 18 C 1.53043 * 107.92020 * 68.26995 * 15 14 13 19 19 C 1.50805 * 109.64556 * 312.68337 * 18 15 14 20 20 C 1.38622 * 118.11679 * 195.43219 * 19 18 15 21 21 C 1.38047 * 120.48831 * 180.35905 * 20 19 18 22 22 C 1.38315 * 119.88615 * 359.97438 * 21 20 19 23 23 C 1.37809 * 119.95643 * 359.86999 * 22 21 20 24 24 C 1.38365 * 122.01881 * 15.55694 * 19 18 15 25 25 H 1.08997 * 109.47158 * 60.00171 * 1 2 3 26 26 H 1.09006 * 109.46821 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47329 * 299.99875 * 1 2 3 28 28 H 1.08992 * 109.47232 * 309.35471 * 4 2 1 29 29 H 1.09003 * 109.46575 * 69.35606 * 4 2 1 30 30 H 0.97004 * 119.99497 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.60459 * 312.50080 * 14 13 2 32 32 H 1.09001 * 109.60521 * 192.00985 * 14 13 2 33 33 H 1.09000 * 109.47601 * 59.99755 * 17 15 14 34 34 H 1.09009 * 109.46951 * 299.99924 * 17 15 14 35 35 H 1.08997 * 109.47356 * 180.02562 * 17 15 14 36 36 H 1.09000 * 109.44305 * 72.73289 * 18 15 14 37 37 H 1.08993 * 109.44425 * 192.62336 * 18 15 14 38 38 H 1.08000 * 119.75324 * 0.37948 * 20 19 18 39 39 H 1.07997 * 120.05989 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.02601 * 179.89457 * 22 21 20 41 41 H 1.07994 * 119.79580 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5292 -0.5243 1.3702 6 1 4.0469 0.1199 0.6751 7 6 4.2307 -1.1668 2.3683 8 7 3.6003 -1.9517 3.2145 9 14 6.0765 -0.9223 2.5186 10 1 6.3518 0.2328 3.4104 11 1 6.6932 -2.1465 3.0895 12 1 6.6519 -0.6585 1.1753 13 7 2.0197 -0.6925 -1.1994 14 6 2.0410 0.2084 -2.3535 15 6 3.1880 1.2105 -2.1728 16 1 3.1187 1.6771 -1.1902 17 6 3.1144 2.2832 -3.2613 18 6 4.5068 0.4430 -2.2906 19 6 4.4456 -0.8032 -1.4436 20 6 5.6338 -1.4569 -1.1564 21 6 5.6338 -2.6061 -0.3916 22 6 4.4410 -3.1112 0.0935 23 6 3.2562 -2.4651 -0.1852 24 6 3.2500 -1.3017 -0.9573 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.5467 -0.3129 2.1313 29 1 1.8194 -1.7857 1.1697 30 1 4.0939 -2.4039 3.9165 31 1 1.0938 0.7442 -2.4168 32 1 2.1993 -0.3683 -3.2648 33 1 2.1620 2.8085 -3.1900 34 1 3.1975 1.8128 -4.2411 35 1 3.9316 2.9922 -3.1286 36 1 4.6738 0.1662 -3.3316 37 1 5.3262 1.0748 -1.9480 38 1 6.5665 -1.0639 -1.5335 39 1 6.5635 -3.1100 -0.1724 40 1 4.4382 -4.0111 0.6906 41 1 2.3264 -2.8614 0.1952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695840406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:33 Heat of formation + Delta-G solvation = 24.587056 kcal Electronic energy + Delta-G solvation = -21220.358675 eV Core-core repulsion = 18485.633273 eV Total energy + Delta-G solvation = -2734.725402 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.87658 -37.96470 -36.72492 -34.41220 -32.39515 -31.92554 -30.87997 -28.60871 -27.21440 -25.85457 -24.60573 -22.97842 -22.45462 -22.02264 -19.46226 -18.41580 -17.36723 -16.94955 -16.71605 -16.38883 -15.93250 -15.01230 -14.86816 -14.73052 -14.32593 -13.93579 -13.85726 -13.57077 -13.42593 -13.28944 -13.12429 -12.89532 -12.59858 -12.55580 -12.39401 -12.33759 -12.09191 -11.92006 -11.73955 -11.44855 -11.27168 -10.93941 -10.81770 -10.37183 -9.76186 -9.03464 -8.37055 -8.04801 -5.94415 0.86966 0.95071 1.37921 1.41098 1.52627 2.51338 2.98935 3.36438 3.42858 3.89561 3.98828 4.01845 4.26707 4.37645 4.43646 4.49124 4.57721 4.63672 4.67492 4.72546 4.79687 4.85815 4.91839 4.97314 5.02772 5.09144 5.18127 5.19760 5.32060 5.35684 5.39804 5.51499 5.53734 5.57413 5.67216 5.84367 5.92729 5.94901 6.05157 6.25776 6.35884 6.53189 6.91182 7.00471 7.60532 9.06722 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.019664 B = 0.010991 C = 0.009069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.576102 B = 2547.014656 C = 3086.636907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.091 3.909 3 H 0.038 0.962 4 C 0.010 3.990 5 C -0.489 4.489 6 H 0.055 0.945 7 C 0.041 3.959 8 N -0.922 5.922 9 Si 0.903 3.097 10 H -0.301 1.301 11 H -0.294 1.294 12 H -0.240 1.240 13 N -0.503 5.503 14 C 0.063 3.937 15 C -0.127 4.127 16 H 0.051 0.949 17 C -0.130 4.130 18 C -0.063 4.063 19 C -0.137 4.137 20 C -0.122 4.122 21 C -0.150 4.150 22 C -0.120 4.120 23 C -0.054 4.054 24 C 0.151 3.849 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.055 0.945 28 H -0.011 1.011 29 H 0.026 0.974 30 H 0.253 0.747 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 4.715 -13.048 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.014 4.014 3 H 0.056 0.944 4 C -0.027 4.027 5 C -0.527 4.527 6 H 0.073 0.927 7 C -0.157 4.157 8 N -0.563 5.563 9 Si 0.731 3.269 10 H -0.229 1.229 11 H -0.220 1.220 12 H -0.163 1.163 13 N -0.220 5.220 14 C -0.064 4.064 15 C -0.147 4.147 16 H 0.069 0.931 17 C -0.188 4.188 18 C -0.099 4.099 19 C -0.140 4.140 20 C -0.141 4.141 21 C -0.169 4.169 22 C -0.139 4.139 23 C -0.073 4.073 24 C 0.055 3.945 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.007 0.993 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.114 0.886 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.271 4.270 -13.024 13.765 hybrid contribution 1.677 0.287 1.438 2.228 sum 0.406 4.557 -11.586 12.456 Atomic orbital electron populations 1.21742 0.93699 1.01744 1.01496 1.21726 0.95253 0.95185 0.89254 0.94441 1.19637 0.95189 0.96419 0.91432 1.21311 0.93181 1.25884 1.12283 0.92711 1.25115 0.99604 0.95323 0.95649 1.70039 1.36341 1.31819 1.18144 0.86409 0.84861 0.76362 0.79231 1.22885 1.22021 1.16305 1.58861 1.24167 1.33068 1.05887 1.22352 0.98561 0.92824 0.92641 1.21736 0.95953 0.97020 0.99957 0.93069 1.21663 1.02239 0.97300 0.97612 1.20508 0.97796 0.92736 0.98908 1.19854 0.92336 0.97995 1.03781 1.20791 0.97089 0.96102 1.00075 1.20801 0.97130 0.98190 1.00796 1.20549 0.93162 1.00250 0.99970 1.20653 0.97056 0.94104 0.95497 1.17977 0.87883 0.93118 0.95546 0.91260 0.93055 0.92604 0.99276 0.95646 0.93785 0.89064 0.89982 0.91728 0.91254 0.92453 0.89502 0.91623 0.86246 0.87011 0.88569 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.37 71.98 0.67 -3.53 16 2 C 0.09 3.60 2.25 44.92 0.10 3.70 16 3 H 0.04 1.53 6.10 -2.39 -0.01 1.51 16 4 C 0.01 0.50 3.97 29.85 0.12 0.62 16 5 C -0.49 -25.71 5.20 25.60 0.13 -25.57 16 6 H 0.05 2.91 5.74 -2.91 -0.02 2.90 16 7 C 0.04 2.26 3.83 84.66 0.32 2.59 16 8 N -0.92 -54.01 13.29 21.45 0.28 -53.72 16 9 Si 0.90 44.50 27.12 68.60 1.86 46.36 16 10 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 11 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 12 H -0.24 -11.08 5.92 99.48 0.59 -10.49 16 13 N -0.50 -18.59 4.37 -671.96 -2.94 -21.53 16 14 C 0.06 1.81 5.03 86.52 0.44 2.25 16 15 C -0.13 -3.53 2.76 -10.65 -0.03 -3.56 16 16 H 0.05 1.73 6.35 -2.39 -0.02 1.71 16 17 C -0.13 -2.59 9.20 71.98 0.66 -1.92 16 18 C -0.06 -1.88 5.15 29.90 0.15 -1.72 16 19 C -0.14 -5.20 4.18 -19.71 -0.08 -5.29 16 20 C -0.12 -4.67 8.74 22.32 0.19 -4.47 16 21 C -0.15 -6.10 7.62 22.24 0.17 -5.93 16 22 C -0.12 -5.32 8.09 22.19 0.18 -5.14 16 23 C -0.05 -2.43 6.06 22.50 0.14 -2.29 16 24 C 0.15 6.21 3.25 38.30 0.12 6.33 16 25 H 0.07 1.85 7.22 -2.39 -0.02 1.83 16 26 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H -0.01 -0.60 8.12 -2.39 -0.02 -0.62 16 29 H 0.03 1.37 5.06 -2.39 -0.01 1.35 16 30 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.09 2.26 7.07 -2.39 -0.02 2.24 16 32 H 0.08 2.18 8.11 -2.39 -0.02 2.16 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 39 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 40 H 0.10 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.10 4.60 6.15 -2.91 -0.02 4.59 16 Total: -1.00 -60.46 298.94 3.38 -57.08 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.88 Total: 15.75 kcal Atomic # 6 Polarization: -47.23 SS G_CDS: 3.30 Total: -43.93 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -2.65 Total: -75.25 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.86 Total: 46.36 kcal Total: -60.46 3.38 -57.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.665 kcal (2) G-P(sol) polarization free energy of solvation -60.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds