Wall clock time and date at job start Mon Mar 30 2020 07:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.46985 * 2 1 4 4 C 1.53001 * 109.47248 * 239.99311 * 2 1 3 5 5 C 1.50697 * 109.46970 * 173.91121 * 4 2 1 6 6 H 1.08003 * 120.00094 * 4.53169 * 5 4 2 7 7 C 1.37883 * 119.99932 * 184.53041 * 5 4 2 8 8 N 1.31513 * 119.99943 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99773 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46999 * 90.00499 * 9 7 5 11 11 H 1.48497 * 109.47253 * 210.00337 * 9 7 5 12 12 H 1.48499 * 109.47379 * 330.00477 * 9 7 5 13 13 N 1.46899 * 109.46659 * 119.99460 * 2 1 3 14 14 C 1.46429 * 111.00011 * 75.40232 * 13 2 1 15 15 C 1.53382 * 108.65783 * 178.85273 * 14 13 2 16 16 H 1.09001 * 109.77028 * 51.37536 * 15 14 13 17 17 C 1.52999 * 109.77454 * 172.11372 * 15 14 13 18 18 C 1.53048 * 107.91338 * 291.72030 * 15 14 13 19 19 C 1.50803 * 109.65368 * 47.30276 * 18 15 14 20 20 C 1.38611 * 118.12071 * 164.55706 * 19 18 15 21 21 C 1.38057 * 120.48976 * 179.76748 * 20 19 18 22 22 C 1.38316 * 119.88533 * 359.95490 * 21 20 19 23 23 C 1.37813 * 119.95055 * 0.12524 * 22 21 20 24 24 C 1.38372 * 122.01441 * 344.49563 * 19 18 15 25 25 H 1.09003 * 109.47057 * 60.00347 * 1 2 3 26 26 H 1.09000 * 109.47431 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47774 * 300.00713 * 1 2 3 28 28 H 1.08999 * 109.47207 * 293.91446 * 4 2 1 29 29 H 1.09004 * 109.46760 * 53.91389 * 4 2 1 30 30 H 0.97000 * 119.99662 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.60047 * 298.60147 * 14 13 2 32 32 H 1.09001 * 109.60529 * 59.09911 * 14 13 2 33 33 H 1.09003 * 109.46712 * 59.99585 * 17 15 14 34 34 H 1.09000 * 109.47216 * 179.97438 * 17 15 14 35 35 H 1.09000 * 109.46788 * 300.00011 * 17 15 14 36 36 H 1.09002 * 109.44008 * 167.35338 * 18 15 14 37 37 H 1.08994 * 109.44004 * 287.24194 * 18 15 14 38 38 H 1.08007 * 119.75931 * 359.74656 * 20 19 18 39 39 H 1.08000 * 120.05963 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.02258 * 180.10198 * 22 21 20 41 41 H 1.08002 * 119.78470 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5394 -0.5922 -1.3268 6 1 4.0825 -0.1137 -0.5251 7 6 4.2181 -1.0849 -2.4212 8 7 5.5267 -0.9726 -2.4887 9 14 3.2790 -1.9132 -3.8073 10 1 2.8899 -0.8971 -4.8179 11 1 4.1412 -2.9405 -4.4448 12 1 2.0592 -2.5605 -3.2611 13 7 2.0195 -0.6924 1.1995 14 6 1.8696 -2.1429 1.0661 15 6 2.4216 -2.8117 2.3313 16 1 1.9767 -2.3536 3.2146 17 6 2.1018 -4.3077 2.3075 18 6 3.9382 -2.6066 2.3486 19 6 4.2584 -1.1635 2.0499 20 6 5.5347 -0.7048 2.3360 21 6 5.8821 0.6062 2.0777 22 6 4.9520 1.4703 1.5286 23 6 3.6806 1.0217 1.2431 24 6 3.3227 -0.3022 1.5047 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.7684 -1.7757 -1.1962 29 1 1.5904 -0.2744 -2.1358 30 1 6.0042 -1.3196 -3.2585 31 1 0.8147 -2.3924 0.9511 32 1 2.4271 -2.4897 0.1960 33 1 2.5599 -4.7632 1.4295 34 1 2.4966 -4.7780 3.2081 35 1 1.0216 -4.4476 2.2677 36 1 4.3285 -2.8687 3.3320 37 1 4.3991 -3.2442 1.5942 38 1 6.2628 -1.3777 2.7644 39 1 6.8784 0.9564 2.3037 40 1 5.2219 2.4957 1.3242 41 1 2.9564 1.6988 0.8148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695840409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:36 Heat of formation + Delta-G solvation = 29.849778 kcal Electronic energy + Delta-G solvation = -20715.920822 eV Core-core repulsion = 17981.423629 eV Total energy + Delta-G solvation = -2734.497193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26656 -36.67406 -35.42250 -32.52851 -31.14456 -30.60907 -28.79700 -27.95159 -26.17663 -24.49902 -22.79491 -21.71742 -21.39283 -19.11814 -18.52323 -16.80732 -16.52039 -15.28132 -15.17788 -14.42813 -14.33285 -13.73687 -13.44542 -13.25075 -13.02008 -12.66609 -12.52957 -12.24562 -12.04681 -12.00260 -11.72494 -11.43745 -11.33118 -11.28323 -10.85404 -10.66360 -10.59891 -10.20184 -10.15388 -9.91349 -9.69468 -9.52733 -9.13045 -8.82527 -8.49951 -7.83963 -6.69546 -5.96429 -3.96754 2.23135 2.30171 3.28338 3.37072 3.39027 4.33251 4.46937 4.77724 5.09278 5.25655 5.32368 5.34853 5.50671 5.69306 5.73022 5.85943 5.87858 5.92224 5.93838 5.96926 6.05487 6.12743 6.18560 6.24588 6.33718 6.39225 6.45530 6.45741 6.50845 6.62551 6.67951 6.80124 6.83178 6.99432 7.12566 7.17366 7.30749 7.37030 7.60739 7.79054 7.90809 8.18118 8.57799 9.14907 9.63638 11.13527 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.010322 C = 0.008785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.609995 B = 2712.023328 C = 3186.505690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.079 3.921 3 H 0.089 0.911 4 C -0.042 4.042 5 C -0.531 4.531 6 H 0.101 0.899 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.866 3.134 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.485 5.485 14 C 0.056 3.944 15 C -0.093 4.093 16 H 0.074 0.926 17 C -0.142 4.142 18 C -0.066 4.066 19 C -0.126 4.126 20 C -0.093 4.093 21 C -0.158 4.158 22 C -0.097 4.097 23 C -0.145 4.145 24 C 0.174 3.826 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.021 0.979 29 H 0.017 0.983 30 H 0.260 0.740 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 -1.415 9.318 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 H 0.107 0.893 4 C -0.080 4.080 5 C -0.569 4.569 6 H 0.119 0.881 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.694 3.306 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.198 5.198 14 C -0.070 4.070 15 C -0.112 4.112 16 H 0.092 0.908 17 C -0.200 4.200 18 C -0.103 4.103 19 C -0.129 4.129 20 C -0.111 4.111 21 C -0.177 4.177 22 C -0.115 4.115 23 C -0.166 4.166 24 C 0.075 3.925 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.875 -1.355 9.545 11.290 hybrid contribution 0.153 -0.679 -1.722 1.857 sum -5.722 -2.034 7.823 9.903 Atomic orbital electron populations 1.21857 0.95883 1.01303 1.00882 1.22000 0.93433 0.99022 0.88201 0.89316 1.20268 0.98332 0.96056 0.93376 1.21613 0.89669 1.38526 1.07053 0.88099 1.24975 0.94552 0.95507 0.97697 1.69922 1.06740 1.46668 1.30036 0.87000 0.80364 0.79858 0.83355 1.20511 1.21613 1.19370 1.58491 1.18136 1.08121 1.35012 1.22266 1.00690 0.86144 0.97935 1.21258 0.95814 0.95433 0.98698 0.90792 1.21753 1.01130 0.95407 1.01705 1.20473 0.95419 0.93452 1.00919 1.19232 0.93466 0.94745 1.05437 1.20691 0.94985 0.95461 0.99987 1.20689 0.98854 0.94268 1.03895 1.20698 0.93412 0.99000 0.98426 1.20939 0.97169 0.95171 1.03275 1.18223 0.87253 0.92986 0.94069 0.92607 0.93220 0.92920 0.96130 0.96489 0.93020 0.91211 0.90899 0.92499 0.92771 0.92810 0.91816 0.90993 0.87370 0.87404 0.87174 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.29 37.16 0.35 -1.92 16 2 C 0.08 1.54 2.36 -67.71 -0.16 1.38 16 3 H 0.09 1.78 5.04 -51.93 -0.26 1.52 16 4 C -0.04 -0.98 3.00 -27.88 -0.08 -1.06 16 5 C -0.53 -14.42 8.50 -34.44 -0.29 -14.71 16 6 H 0.10 2.87 4.08 -52.48 -0.21 2.66 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -27.28 13.96 55.43 0.77 -26.51 16 9 Si 0.87 21.61 27.38 -169.99 -4.65 16.96 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.46 6.67 56.52 0.38 -6.09 16 13 N -0.48 -9.33 4.40 -163.74 -0.72 -10.05 16 14 C 0.06 1.01 3.78 -3.88 -0.01 1.00 16 15 C -0.09 -1.45 2.94 -90.40 -0.27 -1.72 16 16 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.14 -1.82 9.20 37.16 0.34 -1.48 16 18 C -0.07 -1.11 5.15 -27.81 -0.14 -1.25 16 19 C -0.13 -2.49 5.74 -104.38 -0.60 -3.09 16 20 C -0.09 -1.76 9.63 -39.51 -0.38 -2.14 16 21 C -0.16 -2.97 10.05 -39.62 -0.40 -3.37 16 22 C -0.10 -1.87 10.03 -39.71 -0.40 -2.27 16 23 C -0.15 -2.96 6.98 -39.22 -0.27 -3.24 16 24 C 0.17 3.58 3.80 -83.85 -0.32 3.26 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.77 6.95 -51.93 -0.36 0.41 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.48 5.29 -51.93 -0.27 0.21 16 29 H 0.02 0.39 7.32 -51.93 -0.38 0.01 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.07 1.15 6.91 -51.93 -0.36 0.79 16 32 H 0.07 1.56 5.69 -51.93 -0.30 1.27 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 38 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.12 2.32 5.69 -52.49 -0.30 2.02 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -30.29 307.08 -8.96 -39.26 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.25 Total: 4.31 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -2.74 Total: -28.59 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.05 Total: -36.56 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.65 Total: 16.96 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.29 -8.96 -39.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.108 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds