Wall clock time and date at job start Mon Mar 30 2020 07:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.46985 * 2 1 4 4 C 1.53001 * 109.47248 * 239.99311 * 2 1 3 5 5 C 1.50697 * 109.46970 * 173.91121 * 4 2 1 6 6 H 1.08003 * 120.00094 * 4.53169 * 5 4 2 7 7 C 1.37883 * 119.99932 * 184.53041 * 5 4 2 8 8 N 1.31513 * 119.99943 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99773 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46999 * 90.00499 * 9 7 5 11 11 H 1.48497 * 109.47253 * 210.00337 * 9 7 5 12 12 H 1.48499 * 109.47379 * 330.00477 * 9 7 5 13 13 N 1.46899 * 109.46659 * 119.99460 * 2 1 3 14 14 C 1.46429 * 111.00011 * 75.40232 * 13 2 1 15 15 C 1.53382 * 108.65783 * 178.85273 * 14 13 2 16 16 H 1.09001 * 109.77028 * 51.37536 * 15 14 13 17 17 C 1.52999 * 109.77454 * 172.11372 * 15 14 13 18 18 C 1.53048 * 107.91338 * 291.72030 * 15 14 13 19 19 C 1.50803 * 109.65368 * 47.30276 * 18 15 14 20 20 C 1.38611 * 118.12071 * 164.55706 * 19 18 15 21 21 C 1.38057 * 120.48976 * 179.76748 * 20 19 18 22 22 C 1.38316 * 119.88533 * 359.95490 * 21 20 19 23 23 C 1.37813 * 119.95055 * 0.12524 * 22 21 20 24 24 C 1.38372 * 122.01441 * 344.49563 * 19 18 15 25 25 H 1.09003 * 109.47057 * 60.00347 * 1 2 3 26 26 H 1.09000 * 109.47431 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47774 * 300.00713 * 1 2 3 28 28 H 1.08999 * 109.47207 * 293.91446 * 4 2 1 29 29 H 1.09004 * 109.46760 * 53.91389 * 4 2 1 30 30 H 0.97000 * 119.99662 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.60047 * 298.60147 * 14 13 2 32 32 H 1.09001 * 109.60529 * 59.09911 * 14 13 2 33 33 H 1.09003 * 109.46712 * 59.99585 * 17 15 14 34 34 H 1.09000 * 109.47216 * 179.97438 * 17 15 14 35 35 H 1.09000 * 109.46788 * 300.00011 * 17 15 14 36 36 H 1.09002 * 109.44008 * 167.35338 * 18 15 14 37 37 H 1.08994 * 109.44004 * 287.24194 * 18 15 14 38 38 H 1.08007 * 119.75931 * 359.74656 * 20 19 18 39 39 H 1.08000 * 120.05963 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.02258 * 180.10198 * 22 21 20 41 41 H 1.08002 * 119.78470 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5394 -0.5922 -1.3268 6 1 4.0825 -0.1137 -0.5251 7 6 4.2181 -1.0849 -2.4212 8 7 5.5267 -0.9726 -2.4887 9 14 3.2790 -1.9132 -3.8073 10 1 2.8899 -0.8971 -4.8179 11 1 4.1412 -2.9405 -4.4448 12 1 2.0592 -2.5605 -3.2611 13 7 2.0195 -0.6924 1.1995 14 6 1.8696 -2.1429 1.0661 15 6 2.4216 -2.8117 2.3313 16 1 1.9767 -2.3536 3.2146 17 6 2.1018 -4.3077 2.3075 18 6 3.9382 -2.6066 2.3486 19 6 4.2584 -1.1635 2.0499 20 6 5.5347 -0.7048 2.3360 21 6 5.8821 0.6062 2.0777 22 6 4.9520 1.4703 1.5286 23 6 3.6806 1.0217 1.2431 24 6 3.3227 -0.3022 1.5047 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.7684 -1.7757 -1.1962 29 1 1.5904 -0.2744 -2.1358 30 1 6.0042 -1.3196 -3.2585 31 1 0.8147 -2.3924 0.9511 32 1 2.4271 -2.4897 0.1960 33 1 2.5599 -4.7632 1.4295 34 1 2.4966 -4.7780 3.2081 35 1 1.0216 -4.4476 2.2677 36 1 4.3285 -2.8687 3.3320 37 1 4.3991 -3.2442 1.5942 38 1 6.2628 -1.3777 2.7644 39 1 6.8784 0.9564 2.3037 40 1 5.2219 2.4957 1.3242 41 1 2.9564 1.6988 0.8148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695840409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:35 Heat of formation + Delta-G solvation = 13.038595 kcal Electronic energy + Delta-G solvation = -20716.649809 eV Core-core repulsion = 17981.423629 eV Total energy + Delta-G solvation = -2735.226181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.74826 -38.17370 -36.80474 -34.58257 -32.67908 -32.01787 -30.38012 -29.65502 -27.42482 -25.92047 -24.60434 -23.34985 -22.75614 -20.61184 -20.00007 -18.81063 -18.08264 -16.74476 -16.65545 -16.26379 -15.89324 -15.33215 -15.00871 -14.69192 -14.38376 -14.21604 -14.05846 -13.84803 -13.66494 -13.30315 -13.16285 -12.93938 -12.81352 -12.61778 -12.41168 -12.33842 -12.14039 -11.78102 -11.68967 -11.42987 -11.28760 -11.13905 -10.95279 -10.68957 -10.39421 -9.37001 -8.32019 -8.07663 -6.17408 0.70714 0.77805 1.29945 1.32936 1.41481 2.38523 2.84506 3.15419 3.33080 3.79450 3.91748 4.03843 4.08471 4.28860 4.31519 4.49603 4.52318 4.60299 4.63647 4.65884 4.73189 4.83154 4.86287 4.91524 4.96079 4.99821 5.09795 5.10488 5.15194 5.21735 5.28749 5.35091 5.37704 5.49579 5.50494 5.58801 5.73140 5.76854 5.84935 6.11572 6.39748 6.44410 6.66658 6.99144 7.45549 8.97730 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.010322 C = 0.008785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.609995 B = 2712.023328 C = 3186.505690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.079 3.921 3 H 0.079 0.921 4 C -0.040 4.040 5 C -0.524 4.524 6 H 0.083 0.917 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.925 3.075 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.253 1.253 13 N -0.479 5.479 14 C 0.056 3.944 15 C -0.086 4.086 16 H 0.082 0.918 17 C -0.136 4.136 18 C -0.065 4.065 19 C -0.146 4.146 20 C -0.107 4.107 21 C -0.168 4.168 22 C -0.112 4.112 23 C -0.165 4.165 24 C 0.154 3.846 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.258 0.742 31 H 0.089 0.911 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 -2.242 10.177 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.027 4.027 3 H 0.097 0.903 4 C -0.078 4.078 5 C -0.562 4.562 6 H 0.100 0.900 7 C -0.183 4.183 8 N -0.586 5.586 9 Si 0.751 3.249 10 H -0.200 1.200 11 H -0.220 1.220 12 H -0.177 1.177 13 N -0.192 5.192 14 C -0.070 4.070 15 C -0.105 4.105 16 H 0.100 0.900 17 C -0.194 4.194 18 C -0.102 4.102 19 C -0.149 4.149 20 C -0.125 4.125 21 C -0.187 4.187 22 C -0.130 4.130 23 C -0.185 4.185 24 C 0.054 3.946 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.697 -2.180 10.416 13.134 hybrid contribution 0.778 -0.356 -1.921 2.103 sum -6.920 -2.536 8.494 11.246 Atomic orbital electron populations 1.21782 0.92657 1.02271 1.02305 1.21976 0.95940 0.97966 0.86789 0.90313 1.20240 0.95634 0.96589 0.95326 1.21996 0.91935 1.36381 1.05904 0.89961 1.25750 0.95231 0.96777 1.00499 1.70072 1.08504 1.48986 1.31004 0.86042 0.79512 0.78894 0.80469 1.19988 1.22000 1.17654 1.58619 1.17489 1.08696 1.34370 1.22307 1.01352 0.85561 0.97809 1.21249 0.94508 0.97185 0.97540 0.89992 1.21717 1.02259 0.93145 1.02260 1.20529 0.96680 0.91356 1.01638 1.19710 0.93761 0.96217 1.05222 1.21093 0.95412 0.96087 0.99927 1.21070 0.99884 0.94363 1.03375 1.21042 0.93375 1.00213 0.98418 1.21147 0.97836 0.95615 1.03944 1.18488 0.88171 0.93284 0.94607 0.91474 0.92427 0.91277 0.96019 0.96447 0.93334 0.89281 0.94676 0.93525 0.90745 0.91193 0.89263 0.92697 0.85193 0.85071 0.85385 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.29 71.98 0.67 -3.21 16 2 C 0.08 3.01 2.36 44.92 0.11 3.12 16 3 H 0.08 3.14 5.04 -2.39 -0.01 3.13 16 4 C -0.04 -1.80 3.00 29.85 0.09 -1.71 16 5 C -0.52 -28.83 8.50 25.60 0.22 -28.61 16 6 H 0.08 4.80 4.08 -2.91 -0.01 4.79 16 7 C 0.01 0.80 5.47 84.66 0.46 1.27 16 8 N -0.94 -59.11 13.96 21.45 0.30 -58.81 16 9 Si 0.92 44.75 27.38 68.60 1.88 46.63 16 10 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 12 H -0.25 -11.42 6.67 99.48 0.66 -10.76 16 13 N -0.48 -17.99 4.40 -671.96 -2.96 -20.94 16 14 C 0.06 1.95 3.78 86.52 0.33 2.28 16 15 C -0.09 -2.51 2.94 -10.65 -0.03 -2.54 16 16 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 17 C -0.14 -3.11 9.20 71.98 0.66 -2.45 16 18 C -0.07 -2.14 5.15 29.90 0.15 -1.98 16 19 C -0.15 -5.78 5.74 -19.71 -0.11 -5.89 16 20 C -0.11 -4.04 9.63 22.32 0.21 -3.82 16 21 C -0.17 -6.30 10.05 22.25 0.22 -6.08 16 22 C -0.11 -4.37 10.03 22.19 0.22 -4.15 16 23 C -0.17 -6.84 6.98 22.50 0.16 -6.68 16 24 C 0.15 6.33 3.80 38.30 0.15 6.47 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.06 1.59 6.95 -2.39 -0.02 1.57 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.02 0.99 5.29 -2.39 -0.01 0.98 16 29 H 0.02 0.78 7.32 -2.38 -0.02 0.76 16 30 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.09 2.71 6.91 -2.38 -0.02 2.70 16 32 H 0.03 1.49 5.69 -2.39 -0.01 1.48 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 38 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 40 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 41 H 0.12 4.79 5.69 -2.91 -0.02 4.77 16 Total: -1.00 -65.87 307.08 3.69 -62.18 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.96 Total: 24.95 kcal Atomic # 6 Polarization: -57.50 SS G_CDS: 3.51 Total: -54.00 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -2.66 Total: -79.75 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -65.87 3.69 -62.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.215 kcal (2) G-P(sol) polarization free energy of solvation -65.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds