Wall clock time and date at job start Mon Mar 30 2020 07:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47057 * 2 1 4 4 C 1.53002 * 109.47023 * 119.99643 * 2 1 3 5 5 C 1.50703 * 109.46952 * 183.22772 * 4 2 1 6 6 H 1.07995 * 119.99925 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99832 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00151 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99759 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46891 * 60.00268 * 9 7 5 11 11 H 1.48499 * 109.46947 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47158 * 300.00158 * 9 7 5 13 13 N 1.46899 * 109.46814 * 239.99282 * 2 1 3 14 14 C 1.46430 * 110.99478 * 96.27960 * 13 2 1 15 15 C 1.53370 * 108.66112 * 287.85144 * 14 13 2 16 16 H 1.09001 * 109.79998 * 51.42344 * 15 14 13 17 17 C 1.53006 * 109.77274 * 172.17128 * 15 14 13 18 18 C 1.53039 * 107.94337 * 291.79126 * 15 14 13 19 19 C 1.50805 * 109.66128 * 47.29188 * 18 15 14 20 20 C 1.38621 * 118.12397 * 164.70028 * 19 18 15 21 21 C 1.38051 * 120.48798 * 179.36180 * 20 19 18 22 22 C 1.38316 * 119.88648 * 359.97438 * 21 20 19 23 23 C 1.37807 * 119.95476 * 0.13586 * 22 21 20 24 24 C 1.38368 * 122.01226 * 344.28865 * 19 18 15 25 25 H 1.09000 * 109.47515 * 67.55116 * 1 2 3 26 26 H 1.09008 * 109.47330 * 187.55579 * 1 2 3 27 27 H 1.09002 * 109.47100 * 307.55150 * 1 2 3 28 28 H 1.08994 * 109.47350 * 303.22861 * 4 2 1 29 29 H 1.09003 * 109.46964 * 63.23191 * 4 2 1 30 30 H 0.96996 * 119.99796 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.60918 * 47.60310 * 14 13 2 32 32 H 1.08997 * 109.60460 * 168.09692 * 14 13 2 33 33 H 1.08998 * 109.46720 * 178.49297 * 17 15 14 34 34 H 1.08995 * 109.47268 * 298.49189 * 17 15 14 35 35 H 1.08996 * 109.46555 * 58.49995 * 17 15 14 36 36 H 1.08995 * 109.44006 * 287.22637 * 18 15 14 37 37 H 1.09005 * 109.43578 * 167.34726 * 18 15 14 38 38 H 1.07995 * 119.75370 * 359.30756 * 20 19 18 39 39 H 1.07992 * 120.05755 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.02233 * 180.11206 * 22 21 20 41 41 H 1.07993 * 119.79327 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5449 -0.6523 1.2899 6 1 4.0836 -0.1445 0.5036 7 6 4.2339 -1.2375 2.3310 8 7 3.5778 -1.8554 3.2888 9 14 6.0993 -1.1526 2.3810 10 1 6.5293 0.2682 2.4199 11 1 6.5943 -1.8525 3.5936 12 1 6.6571 -1.8056 1.1696 13 7 2.0196 -0.6927 -1.1994 14 6 2.3354 0.2616 -2.2641 15 6 1.0229 0.8197 -2.8282 16 1 0.3976 1.1865 -2.0142 17 6 1.3221 1.9592 -3.8045 18 6 0.3046 -0.3153 -3.5617 19 6 0.2961 -1.5519 -2.6986 20 6 -0.5730 -2.5779 -3.0355 21 6 -0.6118 -3.7372 -2.2869 22 6 0.2218 -3.8790 -1.1923 23 6 1.0868 -2.8623 -0.8499 24 6 1.1283 -1.6863 -1.6014 25 1 -0.3634 0.3924 -0.9498 26 1 -0.3634 -1.0188 0.1351 27 1 -0.3633 0.6263 0.8148 28 1 1.6302 -0.2419 2.1383 29 1 1.7247 -1.7642 1.2208 30 1 4.0626 -2.2674 4.0210 31 1 2.9351 1.0766 -1.8589 32 1 2.8883 -0.2437 -3.0560 33 1 0.3879 2.3341 -4.2224 34 1 1.8334 2.7645 -3.2772 35 1 1.9580 1.5904 -4.6092 36 1 0.8233 -0.5287 -4.4963 37 1 -0.7212 -0.0160 -3.7770 38 1 -1.2251 -2.4692 -3.8894 39 1 -1.2918 -4.5319 -2.5554 40 1 0.1946 -4.7856 -0.6062 41 1 1.7363 -2.9756 0.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695840411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:38 Heat of formation + Delta-G solvation = 23.533090 kcal Electronic energy + Delta-G solvation = -20307.071914 eV Core-core repulsion = 17572.300808 eV Total energy + Delta-G solvation = -2734.771105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60972 -36.91296 -35.14857 -32.68542 -31.04151 -30.76672 -29.27191 -27.35666 -26.37063 -24.36672 -23.18817 -21.77268 -21.44159 -20.17122 -18.62823 -16.50765 -15.84586 -15.59323 -15.52113 -14.77930 -14.40747 -13.95030 -13.68888 -13.36353 -12.98685 -12.75261 -12.55949 -12.51655 -11.97037 -11.85735 -11.79667 -11.56509 -11.39218 -11.16835 -11.12477 -10.80907 -10.67311 -10.49944 -10.26797 -10.09316 -9.86182 -9.34565 -8.97092 -8.53927 -8.29551 -8.20546 -7.17202 -5.88563 -3.86616 1.80783 1.88700 3.40407 3.44497 3.47818 4.16710 4.44811 4.56231 4.86037 4.96479 4.99449 5.29942 5.46787 5.48978 5.49665 5.58443 5.61192 5.68571 5.76704 5.85788 5.88963 5.91379 5.98366 6.04129 6.13487 6.17039 6.25099 6.30831 6.41183 6.46721 6.61851 6.70282 6.85631 6.95234 7.00731 7.03624 7.31109 7.57503 7.77097 7.98937 8.08651 8.16072 8.57068 9.17583 9.74664 11.23158 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.007315 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.290484 B = 3826.644529 C = 4599.024750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.095 3.905 3 H 0.069 0.931 4 C 0.027 3.973 5 C -0.492 4.492 6 H 0.056 0.944 7 C 0.052 3.948 8 N -0.902 5.902 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.478 5.478 14 C 0.065 3.935 15 C -0.142 4.142 16 H 0.086 0.914 17 C -0.140 4.140 18 C -0.066 4.066 19 C -0.136 4.136 20 C -0.112 4.112 21 C -0.149 4.149 22 C -0.114 4.114 23 C -0.115 4.115 24 C 0.143 3.857 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.018 0.982 29 H 0.028 0.972 30 H 0.258 0.742 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.078 2.402 -13.023 15.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.010 4.010 3 H 0.087 0.913 4 C -0.010 4.010 5 C -0.530 4.530 6 H 0.074 0.926 7 C -0.147 4.147 8 N -0.543 5.543 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.192 5.192 14 C -0.063 4.063 15 C -0.162 4.162 16 H 0.104 0.896 17 C -0.198 4.198 18 C -0.103 4.103 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.168 4.168 22 C -0.133 4.133 23 C -0.135 4.135 24 C 0.045 3.955 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.560 2.134 -12.690 14.925 hybrid contribution 0.384 0.239 -0.131 0.471 sum -7.176 2.373 -12.821 14.883 Atomic orbital electron populations 1.22751 0.98362 1.02247 1.00871 1.22013 0.90966 0.97218 0.90794 0.91294 1.19328 0.96217 0.95927 0.89502 1.21081 0.91582 1.33863 1.06514 0.92553 1.24976 0.97904 0.95904 0.95923 1.69948 1.35200 1.37332 1.11812 0.86721 0.86526 0.77947 0.77132 1.20556 1.21609 1.20382 1.58641 1.41676 1.13026 1.05808 1.22323 0.95324 0.94988 0.93688 1.22105 0.99394 0.95517 0.99177 0.89631 1.21731 1.01147 0.97910 0.98992 1.20489 1.00405 0.92089 0.97314 1.19899 0.97615 0.96679 0.99671 1.20781 0.99025 0.93708 0.99599 1.20881 1.00954 0.97902 0.97038 1.20988 0.96389 0.98785 0.97118 1.21580 0.99382 0.91692 1.00830 1.18483 0.90057 0.93158 0.93794 0.92907 0.92256 0.92728 0.96351 0.95414 0.93234 0.90158 0.91100 0.93016 0.92499 0.92747 0.91224 0.91442 0.87189 0.87020 0.86497 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 7.82 37.16 0.29 -2.99 16 2 C 0.09 1.92 1.95 -67.71 -0.13 1.79 16 3 H 0.07 1.39 7.44 -51.93 -0.39 1.00 16 4 C 0.03 0.69 4.44 -27.88 -0.12 0.56 16 5 C -0.49 -13.62 8.79 -34.44 -0.30 -13.92 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.48 -9.24 4.05 -163.75 -0.66 -9.90 16 14 C 0.06 1.04 5.03 -3.89 -0.02 1.02 16 15 C -0.14 -1.89 2.46 -90.41 -0.22 -2.11 16 16 H 0.09 1.23 4.86 -51.93 -0.25 0.97 16 17 C -0.14 -1.49 9.20 37.16 0.34 -1.15 16 18 C -0.07 -0.86 5.07 -27.81 -0.14 -1.00 16 19 C -0.14 -2.13 5.13 -104.38 -0.54 -2.66 16 20 C -0.11 -1.62 9.63 -39.51 -0.38 -2.00 16 21 C -0.15 -2.16 10.05 -39.62 -0.40 -2.55 16 22 C -0.11 -1.86 10.04 -39.71 -0.40 -2.26 16 23 C -0.12 -2.22 8.07 -39.22 -0.32 -2.53 16 24 C 0.14 2.62 3.40 -83.85 -0.28 2.33 16 25 H 0.05 0.85 4.48 -51.93 -0.23 0.62 16 26 H 0.06 1.12 6.59 -51.92 -0.34 0.78 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.03 0.74 5.31 -51.93 -0.28 0.46 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.08 1.28 7.72 -51.93 -0.40 0.88 16 32 H 0.07 1.11 8.11 -51.93 -0.42 0.69 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.14 3.18 5.98 -52.49 -0.31 2.87 16 LS Contribution 312.37 15.07 4.71 4.71 Total: -1.00 -29.56 312.37 -9.35 -38.92 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.39 Total: 1.64 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -2.72 Total: -26.08 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.07 Total: -36.14 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.56 -9.35 -38.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.450 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds