Wall clock time and date at job start Mon Mar 30 2020 07:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47057 * 2 1 4 4 C 1.53002 * 109.47023 * 119.99643 * 2 1 3 5 5 C 1.50703 * 109.46952 * 183.22772 * 4 2 1 6 6 H 1.07995 * 119.99925 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99832 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00151 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99759 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46891 * 60.00268 * 9 7 5 11 11 H 1.48499 * 109.46947 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47158 * 300.00158 * 9 7 5 13 13 N 1.46899 * 109.46814 * 239.99282 * 2 1 3 14 14 C 1.46430 * 110.99478 * 96.27960 * 13 2 1 15 15 C 1.53370 * 108.66112 * 287.85144 * 14 13 2 16 16 H 1.09001 * 109.79998 * 51.42344 * 15 14 13 17 17 C 1.53006 * 109.77274 * 172.17128 * 15 14 13 18 18 C 1.53039 * 107.94337 * 291.79126 * 15 14 13 19 19 C 1.50805 * 109.66128 * 47.29188 * 18 15 14 20 20 C 1.38621 * 118.12397 * 164.70028 * 19 18 15 21 21 C 1.38051 * 120.48798 * 179.36180 * 20 19 18 22 22 C 1.38316 * 119.88648 * 359.97438 * 21 20 19 23 23 C 1.37807 * 119.95476 * 0.13586 * 22 21 20 24 24 C 1.38368 * 122.01226 * 344.28865 * 19 18 15 25 25 H 1.09000 * 109.47515 * 67.55116 * 1 2 3 26 26 H 1.09008 * 109.47330 * 187.55579 * 1 2 3 27 27 H 1.09002 * 109.47100 * 307.55150 * 1 2 3 28 28 H 1.08994 * 109.47350 * 303.22861 * 4 2 1 29 29 H 1.09003 * 109.46964 * 63.23191 * 4 2 1 30 30 H 0.96996 * 119.99796 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.60918 * 47.60310 * 14 13 2 32 32 H 1.08997 * 109.60460 * 168.09692 * 14 13 2 33 33 H 1.08998 * 109.46720 * 178.49297 * 17 15 14 34 34 H 1.08995 * 109.47268 * 298.49189 * 17 15 14 35 35 H 1.08996 * 109.46555 * 58.49995 * 17 15 14 36 36 H 1.08995 * 109.44006 * 287.22637 * 18 15 14 37 37 H 1.09005 * 109.43578 * 167.34726 * 18 15 14 38 38 H 1.07995 * 119.75370 * 359.30756 * 20 19 18 39 39 H 1.07992 * 120.05755 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.02233 * 180.11206 * 22 21 20 41 41 H 1.07993 * 119.79327 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5449 -0.6523 1.2899 6 1 4.0836 -0.1445 0.5036 7 6 4.2339 -1.2375 2.3310 8 7 3.5778 -1.8554 3.2888 9 14 6.0993 -1.1526 2.3810 10 1 6.5293 0.2682 2.4199 11 1 6.5943 -1.8525 3.5936 12 1 6.6571 -1.8056 1.1696 13 7 2.0196 -0.6927 -1.1994 14 6 2.3354 0.2616 -2.2641 15 6 1.0229 0.8197 -2.8282 16 1 0.3976 1.1865 -2.0142 17 6 1.3221 1.9592 -3.8045 18 6 0.3046 -0.3153 -3.5617 19 6 0.2961 -1.5519 -2.6986 20 6 -0.5730 -2.5779 -3.0355 21 6 -0.6118 -3.7372 -2.2869 22 6 0.2218 -3.8790 -1.1923 23 6 1.0868 -2.8623 -0.8499 24 6 1.1283 -1.6863 -1.6014 25 1 -0.3634 0.3924 -0.9498 26 1 -0.3634 -1.0188 0.1351 27 1 -0.3633 0.6263 0.8148 28 1 1.6302 -0.2419 2.1383 29 1 1.7247 -1.7642 1.2208 30 1 4.0626 -2.2674 4.0210 31 1 2.9351 1.0766 -1.8589 32 1 2.8883 -0.2437 -3.0560 33 1 0.3879 2.3341 -4.2224 34 1 1.8334 2.7645 -3.2772 35 1 1.9580 1.5904 -4.6092 36 1 0.8233 -0.5287 -4.4963 37 1 -0.7212 -0.0160 -3.7770 38 1 -1.2251 -2.4692 -3.8894 39 1 -1.2918 -4.5319 -2.5554 40 1 0.1946 -4.7856 -0.6062 41 1 1.7363 -2.9756 0.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695840411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:37 Heat of formation + Delta-G solvation = 7.755035 kcal Electronic energy + Delta-G solvation = -20307.756101 eV Core-core repulsion = 17572.300808 eV Total energy + Delta-G solvation = -2735.455293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.91200 -38.19539 -36.51262 -34.67807 -32.41452 -32.15329 -30.54464 -29.28191 -27.37414 -25.74292 -24.98941 -23.22510 -22.65682 -21.53158 -19.95437 -18.45553 -17.38537 -16.93474 -16.81838 -16.43510 -16.04981 -15.17964 -14.88607 -14.75025 -14.26752 -14.21107 -14.08061 -13.67192 -13.57128 -13.22339 -13.14092 -12.91132 -12.78774 -12.67933 -12.58410 -12.42541 -12.35011 -11.97172 -11.82487 -11.42927 -11.30551 -11.06374 -11.01325 -10.46737 -9.90482 -9.48800 -8.53123 -8.10203 -6.15164 0.56528 0.61574 1.39213 1.42256 1.49356 2.45690 2.87710 3.10054 3.25988 3.81439 3.88855 3.90786 4.07829 4.27189 4.29990 4.31682 4.46146 4.48944 4.53726 4.65705 4.75226 4.79916 4.81858 4.85221 4.92384 5.00183 5.08155 5.14171 5.16908 5.22912 5.31219 5.38088 5.49704 5.50189 5.54976 5.64722 5.76567 5.80548 5.92830 6.11476 6.32196 6.47300 6.79882 6.97849 7.49820 9.01522 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.007315 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.290484 B = 3826.644529 C = 4599.024750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 H 0.067 0.933 4 C 0.033 3.967 5 C -0.500 4.500 6 H 0.055 0.945 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.504 5.504 14 C 0.062 3.938 15 C -0.134 4.134 16 H 0.075 0.925 17 C -0.134 4.134 18 C -0.063 4.063 19 C -0.135 4.135 20 C -0.107 4.107 21 C -0.141 4.141 22 C -0.122 4.122 23 C -0.147 4.147 24 C 0.123 3.877 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.057 0.943 28 H -0.012 1.012 29 H 0.006 0.994 30 H 0.258 0.742 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.125 0.875 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.148 3.154 -16.126 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 H 0.085 0.915 4 C -0.005 4.005 5 C -0.538 4.538 6 H 0.073 0.927 7 C -0.200 4.200 8 N -0.581 5.581 9 Si 0.780 3.220 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.219 5.219 14 C -0.065 4.065 15 C -0.153 4.153 16 H 0.093 0.907 17 C -0.192 4.192 18 C -0.100 4.100 19 C -0.138 4.138 20 C -0.125 4.125 21 C -0.160 4.160 22 C -0.141 4.141 23 C -0.167 4.167 24 C 0.026 3.974 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.006 0.994 29 H 0.024 0.976 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.143 0.857 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.631 2.897 -15.813 18.247 hybrid contribution 0.683 -0.061 0.812 1.062 sum -7.948 2.836 -15.002 17.213 Atomic orbital electron populations 1.22596 0.96390 1.01516 1.02358 1.21642 0.92474 0.96119 0.89546 0.91451 1.19189 0.95159 0.95013 0.91098 1.21412 0.93016 1.33195 1.06182 0.92668 1.25829 1.02792 0.95694 0.95682 1.70089 1.37023 1.38445 1.12527 0.85661 0.80730 0.78450 0.77118 1.19282 1.21234 1.20018 1.58409 1.42892 1.14157 1.06462 1.22377 0.97077 0.94229 0.92814 1.21997 0.97326 0.96546 0.99479 0.90685 1.21685 1.02293 0.96730 0.98449 1.20577 1.01993 0.90392 0.97038 1.20222 0.96618 0.98357 0.98632 1.21240 0.98443 0.92724 1.00112 1.21255 1.00164 0.98986 0.95548 1.21148 0.96336 0.98364 0.98255 1.21364 1.00711 0.93994 1.00660 1.18527 0.91300 0.92433 0.95174 0.90416 0.93790 0.92352 0.99353 0.97628 0.93293 0.90839 0.90938 0.91157 0.92586 0.91892 0.89619 0.88946 0.83404 0.83617 0.85714 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.14 7.82 71.98 0.56 -5.58 16 2 C 0.11 4.52 1.95 44.92 0.09 4.60 16 3 H 0.07 2.79 7.44 -2.39 -0.02 2.77 16 4 C 0.03 1.75 4.44 29.85 0.13 1.89 16 5 C -0.50 -28.93 8.79 25.60 0.23 -28.70 16 6 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -58.68 13.29 21.45 0.28 -58.40 16 9 Si 0.95 46.29 29.54 68.60 2.03 48.31 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 13 N -0.50 -19.95 4.05 -671.99 -2.72 -22.68 16 14 C 0.06 1.95 5.03 86.52 0.44 2.39 16 15 C -0.13 -3.20 2.46 -10.65 -0.03 -3.23 16 16 H 0.08 1.96 4.86 -2.39 -0.01 1.95 16 17 C -0.13 -2.38 9.20 71.98 0.66 -1.72 16 18 C -0.06 -1.39 5.07 29.89 0.15 -1.24 16 19 C -0.14 -3.91 5.13 -19.71 -0.10 -4.01 16 20 C -0.11 -2.65 9.63 22.32 0.21 -2.44 16 21 C -0.14 -3.69 10.05 22.24 0.22 -3.46 16 22 C -0.12 -4.02 10.04 22.19 0.22 -3.80 16 23 C -0.15 -5.97 8.07 22.50 0.18 -5.79 16 24 C 0.12 4.53 3.40 38.30 0.13 4.66 16 25 H 0.08 2.39 4.48 -2.39 -0.01 2.38 16 26 H 0.04 1.71 6.59 -2.38 -0.02 1.69 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 29 H 0.01 0.32 5.31 -2.39 -0.01 0.31 16 30 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.07 2.34 7.72 -2.39 -0.02 2.32 16 32 H 0.07 2.21 8.11 -2.39 -0.02 2.19 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.68 8.08 -2.39 -0.02 1.66 16 37 H 0.09 1.64 8.14 -2.38 -0.02 1.63 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 40 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 41 H 0.10 4.70 5.98 -2.91 -0.02 4.68 16 Total: -1.00 -67.50 312.37 4.15 -63.35 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.00 Total: 15.61 kcal Atomic # 6 Polarization: -49.76 SS G_CDS: 3.56 Total: -46.20 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -2.44 Total: -81.07 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -67.50 4.15 -63.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.105 kcal (2) G-P(sol) polarization free energy of solvation -67.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds