Wall clock time and date at job start Mon Mar 30 2020 07:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 H 1.08993 * 109.47288 * 305.18115 * 3 2 1 5 5 C 1.50692 * 109.47099 * 185.17453 * 3 2 1 6 6 H 1.08006 * 120.00673 * 245.41555 * 5 3 2 7 7 C 1.37884 * 120.00174 * 65.41840 * 5 3 2 8 8 N 1.31507 * 120.00237 * 196.43848 * 7 5 3 9 9 Si 1.86797 * 119.99632 * 16.43810 * 7 5 3 10 10 H 1.48505 * 109.47311 * 85.83646 * 9 7 5 11 11 H 1.48494 * 109.47090 * 205.83887 * 9 7 5 12 12 H 1.48506 * 109.47343 * 325.83757 * 9 7 5 13 13 N 1.46907 * 109.46474 * 65.18080 * 3 2 1 14 14 C 1.46896 * 110.99467 * 263.15679 * 13 3 2 15 15 H 1.09001 * 110.73439 * 27.74845 * 14 13 3 16 16 C 1.54351 * 110.82543 * 264.33862 * 14 13 3 17 17 C 1.51367 * 105.17177 * 215.23433 * 16 14 13 18 18 C 1.38500 * 130.38757 * 197.21785 * 17 16 14 19 19 C 1.38105 * 120.21361 * 179.64598 * 18 17 16 20 20 C 1.38251 * 119.93163 * 0.60971 * 19 18 17 21 21 C 1.38106 * 119.93803 * 359.42378 * 20 19 18 22 22 C 1.38211 * 109.76030 * 17.19102 * 17 16 14 23 23 C 1.51369 * 109.75948 * 359.97438 * 22 17 16 24 24 H 1.09002 * 110.30515 * 223.89187 * 23 22 17 25 25 C 1.52999 * 110.30102 * 101.73840 * 23 22 17 26 26 H 1.09003 * 109.46885 * 298.26473 * 1 2 3 27 27 H 1.08998 * 109.47511 * 58.26595 * 1 2 3 28 28 H 1.09000 * 109.47317 * 178.26805 * 1 2 3 29 29 H 1.09004 * 109.47046 * 240.00561 * 2 1 3 30 30 H 1.09000 * 109.47145 * 120.01062 * 2 1 3 31 31 H 0.96998 * 120.00032 * 179.97438 * 8 7 5 32 32 H 1.00897 * 110.99996 * 139.20933 * 13 3 2 33 33 H 1.09000 * 110.30321 * 96.30044 * 16 14 13 34 34 H 1.09002 * 110.38284 * 334.19934 * 16 14 13 35 35 H 1.08004 * 119.89204 * 359.97358 * 18 17 16 36 36 H 1.07999 * 120.02882 * 180.30800 * 19 18 17 37 37 H 1.07999 * 120.02882 * 179.70459 * 20 19 18 38 38 H 1.07998 * 119.88962 * 180.28524 * 21 20 19 39 39 H 1.09006 * 109.46873 * 61.45493 * 25 23 22 40 40 H 1.09001 * 109.47298 * 181.45159 * 25 23 22 41 41 H 1.08999 * 109.47602 * 301.45724 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6029 1.9824 -0.8399 5 6 3.5415 1.4444 -0.1281 6 1 4.1525 1.8084 0.6847 7 6 4.1354 0.9814 -1.2831 8 7 5.4148 0.6770 -1.2882 9 14 3.1228 0.7866 -2.8407 10 1 3.0826 2.0796 -3.5700 11 1 3.7398 -0.2507 -3.7057 12 1 1.7408 0.3761 -2.4845 13 7 1.6550 2.0978 1.2572 14 6 0.4248 2.8822 1.0866 15 1 -0.1937 2.4623 0.2934 16 6 0.7534 4.3630 0.8003 17 6 -0.3393 5.1517 1.4897 18 6 -0.7402 6.4665 1.3205 19 6 -1.7833 6.9767 2.0680 20 6 -2.4217 6.1768 2.9975 21 6 -2.0229 4.8657 3.1683 22 6 -0.9813 4.3503 2.4148 23 6 -0.3646 2.9680 2.4100 24 1 -1.1436 2.2060 2.4361 25 6 0.5801 2.8040 3.6023 26 1 -0.3633 0.4867 0.9052 27 1 -0.3634 0.5405 -0.8740 28 1 -0.3634 -1.0272 -0.0311 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8899 31 1 5.8325 0.3509 -2.1006 32 1 2.4051 2.6736 1.6092 33 1 0.7378 4.5532 -0.2728 34 1 1.7271 4.6229 1.2157 35 1 -0.2389 7.0933 0.5977 36 1 -2.0967 8.0010 1.9301 37 1 -3.2345 6.5757 3.5864 38 1 -2.5252 4.2402 3.8913 39 1 0.0179 2.9163 4.5294 40 1 1.0359 1.8144 3.5714 41 1 1.3595 3.5646 3.5557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698934569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:10 Heat of formation + Delta-G solvation = 16.900925 kcal Electronic energy + Delta-G solvation = -19721.121236 eV Core-core repulsion = 16986.062539 eV Total energy + Delta-G solvation = -2735.058697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.22972 -37.19207 -34.86544 -32.11969 -31.76013 -30.80683 -29.33050 -27.98648 -26.08305 -24.54314 -22.60523 -21.85095 -20.77358 -19.79418 -19.36518 -16.90381 -16.14511 -15.80332 -15.00555 -14.92422 -14.54717 -13.71749 -13.54450 -13.36168 -12.97701 -12.76973 -12.65441 -12.51547 -12.28024 -12.07474 -11.89213 -11.80934 -11.53512 -10.92523 -10.87800 -10.78372 -10.61886 -10.52561 -10.35191 -10.09649 -9.82155 -9.39710 -9.13800 -8.72744 -8.44758 -8.37086 -7.45753 -6.15663 -4.10360 1.46110 1.47197 3.25810 3.35327 3.38384 3.85144 4.38574 4.55898 4.76296 5.00224 5.09280 5.11751 5.17564 5.29742 5.41554 5.59868 5.66221 5.71694 5.85113 5.89560 5.93943 6.05775 6.06818 6.16016 6.22457 6.27119 6.30937 6.36898 6.50435 6.53346 6.57282 6.68981 6.73760 6.76960 6.86193 7.03012 7.07238 7.10722 7.44820 7.65190 7.97000 8.33969 8.59371 8.93751 9.51042 10.97226 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028467 B = 0.005500 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.357190 B = 5089.833966 C = 5353.588876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C 0.192 3.808 4 H 0.002 0.998 5 C -0.532 4.532 6 H 0.076 0.924 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.861 3.139 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.252 1.252 13 N -0.665 5.665 14 C 0.093 3.907 15 H 0.084 0.916 16 C -0.112 4.112 17 C -0.087 4.087 18 C -0.112 4.112 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.109 4.109 22 C -0.085 4.085 23 C -0.045 4.045 24 H 0.075 0.925 25 C -0.124 4.124 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.264 0.736 32 H 0.342 0.658 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.175 8.096 6.492 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C 0.083 3.917 4 H 0.019 0.981 5 C -0.570 4.570 6 H 0.094 0.906 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.688 3.312 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.176 1.176 13 N -0.295 5.295 14 C -0.019 4.019 15 H 0.102 0.898 16 C -0.151 4.151 17 C -0.087 4.087 18 C -0.130 4.130 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.127 4.127 22 C -0.086 4.086 23 C -0.064 4.064 24 H 0.093 0.907 25 C -0.182 4.182 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.162 0.838 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.305 7.436 6.620 17.429 hybrid contribution -0.109 0.803 -1.534 1.735 sum -14.415 8.239 5.086 17.364 Atomic orbital electron populations 1.21910 0.98771 0.99562 1.00578 1.21859 0.92559 0.99413 1.00954 1.19465 0.95444 0.90727 0.86041 0.98062 1.21157 0.89329 1.43847 1.02651 0.90622 1.24875 0.94698 0.93979 0.98797 1.69984 1.11618 1.42772 1.28184 0.87237 0.82096 0.78002 0.83843 1.20670 1.21456 1.17594 1.60555 1.04889 1.33170 1.30877 1.22369 0.93941 0.90113 0.95478 0.89821 1.21942 0.96784 0.96065 1.00275 1.20682 0.97232 0.93646 0.97149 1.20660 0.97566 0.94601 1.00171 1.20961 0.96799 0.99575 0.97090 1.20962 1.00412 0.94053 0.99131 1.20608 0.97008 0.95403 0.99675 1.20766 0.95189 0.96876 0.95742 1.20688 0.96998 0.91909 0.96831 0.90692 1.21522 0.98319 1.03414 0.94919 0.92479 0.94521 0.94656 0.93127 0.92206 0.92632 0.83780 0.91049 0.89832 0.86573 0.86364 0.86363 0.86574 0.94131 0.90220 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.65 37.16 0.32 -2.39 16 2 C -0.11 -2.35 4.96 -26.73 -0.13 -2.48 16 3 C 0.19 4.30 1.70 -68.86 -0.12 4.18 16 4 H 0.00 0.04 6.22 -51.93 -0.32 -0.28 16 5 C -0.53 -14.24 8.98 -34.44 -0.31 -14.55 16 6 H 0.08 2.19 7.74 -52.48 -0.41 1.79 16 7 C 0.08 2.23 5.32 -17.82 -0.09 2.13 16 8 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 9 Si 0.86 20.83 25.86 -169.99 -4.40 16.44 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.25 -5.76 5.59 56.52 0.32 -5.45 16 13 N -0.66 -12.57 4.57 -99.48 -0.45 -13.03 16 14 C 0.09 1.52 1.97 -66.31 -0.13 1.39 16 15 H 0.08 1.44 6.04 -51.93 -0.31 1.13 16 16 C -0.11 -1.75 6.44 -26.85 -0.17 -1.92 16 17 C -0.09 -1.26 6.14 -104.21 -0.64 -1.90 16 18 C -0.11 -1.45 10.04 -39.53 -0.40 -1.85 16 19 C -0.13 -1.45 10.05 -39.63 -0.40 -1.85 16 20 C -0.13 -1.44 10.05 -39.63 -0.40 -1.83 16 21 C -0.11 -1.35 10.04 -39.53 -0.40 -1.75 16 22 C -0.09 -1.20 5.45 -104.21 -0.57 -1.77 16 23 C -0.05 -0.65 3.44 -90.74 -0.31 -0.96 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 C -0.12 -1.74 8.37 37.16 0.31 -1.43 16 26 H 0.06 0.97 6.59 -51.93 -0.34 0.62 16 27 H 0.04 0.65 7.98 -51.93 -0.41 0.23 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.16 5.06 -51.93 -0.26 0.89 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.34 6.64 7.06 -39.29 -0.28 6.36 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.33 7.53 -51.93 -0.39 0.94 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 1.20 7.54 -51.93 -0.39 0.80 16 41 H 0.05 0.72 8.11 -51.93 -0.42 0.29 16 LS Contribution 316.89 15.07 4.78 4.78 Total: -1.00 -28.36 316.89 -9.30 -37.66 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.57 Total: 6.83 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -3.43 Total: -26.98 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.32 Total: -38.72 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.40 Total: 16.44 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.36 -9.30 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698934569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.565 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds