Wall clock time and date at job start Mon Mar 30 2020 07:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 H 1.08993 * 109.47288 * 305.18115 * 3 2 1 5 5 C 1.50692 * 109.47099 * 185.17453 * 3 2 1 6 6 H 1.08006 * 120.00673 * 245.41555 * 5 3 2 7 7 C 1.37884 * 120.00174 * 65.41840 * 5 3 2 8 8 N 1.31507 * 120.00237 * 196.43848 * 7 5 3 9 9 Si 1.86797 * 119.99632 * 16.43810 * 7 5 3 10 10 H 1.48505 * 109.47311 * 85.83646 * 9 7 5 11 11 H 1.48494 * 109.47090 * 205.83887 * 9 7 5 12 12 H 1.48506 * 109.47343 * 325.83757 * 9 7 5 13 13 N 1.46907 * 109.46474 * 65.18080 * 3 2 1 14 14 C 1.46896 * 110.99467 * 263.15679 * 13 3 2 15 15 H 1.09001 * 110.73439 * 27.74845 * 14 13 3 16 16 C 1.54351 * 110.82543 * 264.33862 * 14 13 3 17 17 C 1.51367 * 105.17177 * 215.23433 * 16 14 13 18 18 C 1.38500 * 130.38757 * 197.21785 * 17 16 14 19 19 C 1.38105 * 120.21361 * 179.64598 * 18 17 16 20 20 C 1.38251 * 119.93163 * 0.60971 * 19 18 17 21 21 C 1.38106 * 119.93803 * 359.42378 * 20 19 18 22 22 C 1.38211 * 109.76030 * 17.19102 * 17 16 14 23 23 C 1.51369 * 109.75948 * 359.97438 * 22 17 16 24 24 H 1.09002 * 110.30515 * 223.89187 * 23 22 17 25 25 C 1.52999 * 110.30102 * 101.73840 * 23 22 17 26 26 H 1.09003 * 109.46885 * 298.26473 * 1 2 3 27 27 H 1.08998 * 109.47511 * 58.26595 * 1 2 3 28 28 H 1.09000 * 109.47317 * 178.26805 * 1 2 3 29 29 H 1.09004 * 109.47046 * 240.00561 * 2 1 3 30 30 H 1.09000 * 109.47145 * 120.01062 * 2 1 3 31 31 H 0.96998 * 120.00032 * 179.97438 * 8 7 5 32 32 H 1.00897 * 110.99996 * 139.20933 * 13 3 2 33 33 H 1.09000 * 110.30321 * 96.30044 * 16 14 13 34 34 H 1.09002 * 110.38284 * 334.19934 * 16 14 13 35 35 H 1.08004 * 119.89204 * 359.97358 * 18 17 16 36 36 H 1.07999 * 120.02882 * 180.30800 * 19 18 17 37 37 H 1.07999 * 120.02882 * 179.70459 * 20 19 18 38 38 H 1.07998 * 119.88962 * 180.28524 * 21 20 19 39 39 H 1.09006 * 109.46873 * 61.45493 * 25 23 22 40 40 H 1.09001 * 109.47298 * 181.45159 * 25 23 22 41 41 H 1.08999 * 109.47602 * 301.45724 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6029 1.9824 -0.8399 5 6 3.5415 1.4444 -0.1281 6 1 4.1525 1.8084 0.6847 7 6 4.1354 0.9814 -1.2831 8 7 5.4148 0.6770 -1.2882 9 14 3.1228 0.7866 -2.8407 10 1 3.0826 2.0796 -3.5700 11 1 3.7398 -0.2507 -3.7057 12 1 1.7408 0.3761 -2.4845 13 7 1.6550 2.0978 1.2572 14 6 0.4248 2.8822 1.0866 15 1 -0.1937 2.4623 0.2934 16 6 0.7534 4.3630 0.8003 17 6 -0.3393 5.1517 1.4897 18 6 -0.7402 6.4665 1.3205 19 6 -1.7833 6.9767 2.0680 20 6 -2.4217 6.1768 2.9975 21 6 -2.0229 4.8657 3.1683 22 6 -0.9813 4.3503 2.4148 23 6 -0.3646 2.9680 2.4100 24 1 -1.1436 2.2060 2.4361 25 6 0.5801 2.8040 3.6023 26 1 -0.3633 0.4867 0.9052 27 1 -0.3634 0.5405 -0.8740 28 1 -0.3634 -1.0272 -0.0311 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8899 31 1 5.8325 0.3509 -2.1006 32 1 2.4051 2.6736 1.6092 33 1 0.7378 4.5532 -0.2728 34 1 1.7271 4.6229 1.2157 35 1 -0.2389 7.0933 0.5977 36 1 -2.0967 8.0010 1.9301 37 1 -3.2345 6.5757 3.5864 38 1 -2.5252 4.2402 3.8913 39 1 0.0179 2.9163 4.5294 40 1 1.0359 1.8144 3.5714 41 1 1.3595 3.5646 3.5557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698934569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:09 Heat of formation + Delta-G solvation = 1.710272 kcal Electronic energy + Delta-G solvation = -19721.779952 eV Core-core repulsion = 16986.062539 eV Total energy + Delta-G solvation = -2735.717414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.32493 -38.55069 -36.31991 -34.14605 -32.83362 -32.21603 -30.40213 -29.51480 -27.59133 -25.71681 -24.34515 -22.95156 -21.82540 -21.48362 -20.62764 -18.87634 -17.40084 -17.09603 -16.29711 -16.09958 -15.98858 -15.34211 -14.84705 -14.62331 -14.59249 -14.14541 -14.00542 -13.82365 -13.61094 -13.39003 -13.26791 -13.15688 -12.89057 -12.67765 -12.39180 -12.23547 -11.94429 -11.82481 -11.69299 -11.44575 -11.40145 -11.18588 -11.06495 -10.55284 -9.67680 -9.38492 -9.03238 -8.32722 -6.30749 0.49599 0.52514 1.32324 1.36273 1.45480 2.33840 2.89422 3.01894 3.35923 3.59644 3.80228 4.10574 4.16572 4.22443 4.30714 4.35827 4.48105 4.54859 4.64810 4.66570 4.68871 4.74757 4.77878 4.83355 4.91025 5.01910 5.12377 5.18312 5.22549 5.23948 5.32726 5.36969 5.44711 5.56142 5.57654 5.62053 5.65244 5.82752 5.85900 6.04977 6.17073 6.52661 6.70710 6.88655 7.34786 8.83751 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028467 B = 0.005500 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.357190 B = 5089.833966 C = 5353.588876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C 0.199 3.801 4 H -0.002 1.002 5 C -0.533 4.533 6 H 0.038 0.962 7 C 0.026 3.974 8 N -0.938 5.938 9 Si 0.921 3.079 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.229 1.229 13 N -0.660 5.660 14 C 0.091 3.909 15 H 0.080 0.920 16 C -0.109 4.109 17 C -0.109 4.109 18 C -0.124 4.124 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.098 4.098 23 C -0.037 4.037 24 H 0.084 0.916 25 C -0.118 4.118 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.336 0.664 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.136 0.864 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.598 8.974 6.909 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C 0.090 3.910 4 H 0.016 0.984 5 C -0.571 4.571 6 H 0.057 0.943 7 C -0.173 4.173 8 N -0.577 5.577 9 Si 0.746 3.254 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.152 1.152 13 N -0.289 5.289 14 C -0.020 4.020 15 H 0.098 0.902 16 C -0.148 4.148 17 C -0.109 4.109 18 C -0.142 4.142 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.132 4.132 22 C -0.098 4.098 23 C -0.056 4.056 24 H 0.102 0.898 25 C -0.176 4.176 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.155 0.845 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.154 0.846 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.759 8.323 7.052 20.842 hybrid contribution 0.973 0.623 -1.554 1.936 sum -16.786 8.945 5.498 19.799 Atomic orbital electron populations 1.21804 0.95563 1.01186 1.01312 1.21765 0.95402 0.97917 0.99735 1.19304 0.92362 0.91976 0.87404 0.98401 1.21470 0.91681 1.42510 1.01412 0.94344 1.25675 0.95654 0.93937 1.02070 1.70115 1.13661 1.44829 1.29113 0.86260 0.81631 0.77953 0.79590 1.20359 1.21449 1.15171 1.60548 1.05598 1.33849 1.28922 1.22395 0.92669 0.90073 0.96901 0.90218 1.21801 0.97042 0.96029 0.99900 1.20632 0.97508 0.94652 0.98131 1.20888 0.98315 0.94137 1.00846 1.21330 0.95781 1.00935 0.96258 1.21376 1.00598 0.93459 0.98689 1.20897 0.96369 0.96304 0.99593 1.20762 0.96200 0.96299 0.96564 1.20572 0.96809 0.92913 0.95348 0.89817 1.21448 0.98160 1.02146 0.95829 0.91486 0.94069 0.92583 0.94557 0.93310 0.92601 0.84455 0.91892 0.91088 0.85817 0.83620 0.83256 0.84604 0.92221 0.91575 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 8.65 71.98 0.62 -4.12 16 2 C -0.11 -4.63 4.96 30.59 0.15 -4.47 16 3 C 0.20 8.96 1.70 44.17 0.08 9.04 16 4 H 0.00 -0.07 6.22 -2.39 -0.01 -0.09 16 5 C -0.53 -29.52 8.98 25.60 0.23 -29.29 16 6 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 7 C 0.03 1.46 5.32 84.66 0.45 1.91 16 8 N -0.94 -57.85 13.96 21.45 0.30 -57.55 16 9 Si 0.92 43.31 25.86 68.60 1.77 45.09 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.23 -9.82 5.59 99.48 0.56 -9.27 16 13 N -0.66 -25.29 4.57 -468.66 -2.14 -27.43 16 14 C 0.09 2.93 1.97 45.83 0.09 3.02 16 15 H 0.08 2.65 6.04 -2.39 -0.01 2.64 16 16 C -0.11 -3.44 6.44 30.52 0.20 -3.24 16 17 C -0.11 -3.05 6.14 -19.60 -0.12 -3.17 16 18 C -0.12 -2.99 10.04 22.30 0.22 -2.77 16 19 C -0.13 -2.45 10.05 22.24 0.22 -2.23 16 20 C -0.12 -2.29 10.05 22.24 0.22 -2.06 16 21 C -0.11 -2.44 10.04 22.30 0.22 -2.22 16 22 C -0.10 -2.56 5.45 -19.60 -0.11 -2.67 16 23 C -0.04 -1.03 3.44 -10.87 -0.04 -1.06 16 24 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 25 C -0.12 -3.20 8.37 71.98 0.60 -2.60 16 26 H 0.07 2.10 6.59 -2.39 -0.02 2.09 16 27 H 0.04 1.34 7.98 -2.39 -0.02 1.32 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.61 5.06 -2.39 -0.01 1.60 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.34 13.62 7.06 -89.70 -0.63 12.99 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 34 H 0.07 2.36 7.53 -2.39 -0.02 2.34 16 35 H 0.12 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.07 1.96 7.54 -2.39 -0.02 1.94 16 41 H 0.04 1.10 8.11 -2.39 -0.02 1.08 16 Total: -1.00 -62.40 316.89 3.20 -59.20 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.22 Total: 26.63 kcal Atomic # 6 Polarization: -48.99 SS G_CDS: 3.05 Total: -45.94 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.84 Total: -84.98 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.77 Total: 45.09 kcal Total: -62.40 3.20 -59.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698934569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.913 kcal (2) G-P(sol) polarization free energy of solvation -62.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds