Wall clock time and date at job start Mon Mar 30 2020 07:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 H 1.08992 * 109.46994 * 305.44873 * 3 2 1 5 5 C 1.50697 * 109.46864 * 185.44905 * 3 2 1 6 6 H 1.08006 * 120.00276 * 244.29358 * 5 3 2 7 7 C 1.37878 * 120.00143 * 64.29619 * 5 3 2 8 8 N 1.31512 * 120.00336 * 191.24501 * 7 5 3 9 9 Si 1.86804 * 119.99872 * 11.24299 * 7 5 3 10 10 H 1.48490 * 109.47068 * 92.74153 * 9 7 5 11 11 H 1.48499 * 109.46823 * 212.74442 * 9 7 5 12 12 H 1.48504 * 109.46828 * 332.74058 * 9 7 5 13 13 N 1.46906 * 109.46917 * 65.45119 * 3 2 1 14 14 C 1.46896 * 110.99762 * 266.02462 * 13 3 2 15 15 H 1.08998 * 110.72723 * 42.50026 * 14 13 3 16 16 C 1.54341 * 110.82603 * 279.09152 * 14 13 3 17 17 C 1.51372 * 105.17178 * 215.43087 * 16 14 13 18 18 C 1.38497 * 130.39001 * 197.16417 * 17 16 14 19 19 C 1.38096 * 120.21300 * 180.02562 * 18 17 16 20 20 C 1.38260 * 119.93863 * 0.30112 * 19 18 17 21 21 C 1.38110 * 119.92825 * 359.44260 * 20 19 18 22 22 C 1.38216 * 109.75722 * 17.18652 * 17 16 14 23 23 C 1.51367 * 109.75922 * 359.97438 * 22 17 16 24 24 H 1.09004 * 110.38452 * 101.78326 * 23 22 17 25 25 C 1.53000 * 110.30553 * 223.88677 * 23 22 17 26 26 H 1.09008 * 109.46959 * 61.63906 * 1 2 3 27 27 H 1.08997 * 109.47017 * 181.63714 * 1 2 3 28 28 H 1.08999 * 109.47836 * 301.64184 * 1 2 3 29 29 H 1.08993 * 109.47509 * 240.00127 * 2 1 3 30 30 H 1.09001 * 109.46980 * 119.99479 * 2 1 3 31 31 H 0.96995 * 120.00232 * 180.02562 * 8 7 5 32 32 H 1.00893 * 111.00061 * 29.98410 * 13 3 2 33 33 H 1.08995 * 110.30597 * 96.50521 * 16 14 13 34 34 H 1.09006 * 110.38653 * 334.39423 * 16 14 13 35 35 H 1.07999 * 119.89249 * 0.02578 * 18 17 16 36 36 H 1.08002 * 120.03490 * 180.02562 * 19 18 17 37 37 H 1.07997 * 120.03538 * 179.70434 * 20 19 18 38 38 H 1.07995 * 119.89016 * 180.27966 * 21 20 19 39 39 H 1.08999 * 109.47494 * 175.75113 * 25 23 22 40 40 H 1.09004 * 109.47051 * 295.75053 * 25 23 22 41 41 H 1.09002 * 109.46661 * 55.74569 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5991 1.9837 -0.8371 5 6 3.5409 1.4447 -0.1349 6 1 4.1548 1.8243 0.6685 7 6 4.1305 0.9621 -1.2841 8 7 5.4289 0.7564 -1.3206 9 14 3.0849 0.6003 -2.7892 10 1 3.0573 1.7945 -3.6714 11 1 3.6644 -0.5490 -3.5298 12 1 1.7018 0.2678 -2.3628 13 7 1.6606 2.0960 1.2599 14 6 0.3937 2.8251 1.1140 15 1 -0.3265 2.2370 0.5452 16 6 0.6248 4.1998 0.4517 17 6 -0.3693 5.1303 1.1131 18 6 -0.8334 6.3744 0.7193 19 6 -1.7546 7.0500 1.4952 20 6 -2.2109 6.4862 2.6723 21 6 -1.7533 5.2434 3.0639 22 6 -0.8301 4.5639 2.2866 23 6 -0.1779 3.2138 2.4939 24 1 0.6248 3.2886 3.2276 25 6 -1.2167 2.1863 2.9477 26 1 -0.3633 0.4882 -0.9044 27 1 -0.3633 -1.0272 0.0294 28 1 -0.3635 0.5391 0.8748 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8437 0.4172 -2.1291 32 1 1.6080 1.4266 2.0129 33 1 0.4326 4.1407 -0.6195 34 1 1.6432 4.5429 0.6343 35 1 -0.4737 6.8175 -0.1976 36 1 -2.1149 8.0198 1.1851 37 1 -2.9277 7.0153 3.2827 38 1 -2.1136 4.8017 3.9811 39 1 -0.7491 1.2044 3.0199 40 1 -1.6104 2.4739 3.9226 41 1 -2.0308 2.1488 2.2238 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698934570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:12 Heat of formation + Delta-G solvation = 20.891836 kcal Electronic energy + Delta-G solvation = -19713.985565 eV Core-core repulsion = 16979.099927 eV Total energy + Delta-G solvation = -2734.885639 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.18260 -37.30607 -34.94962 -32.12921 -32.02223 -30.64575 -29.52546 -27.95691 -26.36622 -24.28963 -22.70051 -21.64231 -20.84263 -19.87580 -19.57573 -16.78010 -16.35222 -15.46414 -15.22085 -14.95681 -14.63875 -13.95779 -13.72621 -13.31631 -13.22807 -12.86476 -12.83257 -12.55991 -12.38401 -11.99049 -11.78001 -11.69356 -11.62667 -10.94198 -10.88625 -10.84457 -10.77370 -10.56273 -10.46954 -10.08920 -9.91909 -9.30157 -9.22850 -8.70326 -8.41065 -8.33905 -7.38208 -6.03445 -3.97364 1.47939 1.49969 3.28044 3.36866 3.39811 3.87535 4.44253 4.57476 4.70618 4.92085 5.07858 5.10018 5.23765 5.24679 5.40392 5.54009 5.62002 5.63232 5.68231 5.78851 5.85015 5.90880 5.93926 6.02385 6.06430 6.10230 6.24465 6.34374 6.42939 6.50949 6.52855 6.55099 6.57943 6.62015 6.78381 6.86739 6.93309 7.11848 7.20749 7.76842 7.96083 8.35097 8.73137 9.11734 9.61892 11.10146 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027250 B = 0.005651 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.280597 B = 4953.793659 C = 5378.780641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.157 4.157 3 C 0.193 3.807 4 H 0.027 0.973 5 C -0.497 4.497 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.662 5.662 14 C 0.085 3.915 15 H 0.056 0.944 16 C -0.077 4.077 17 C -0.083 4.083 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.130 4.130 21 C -0.108 4.108 22 C -0.086 4.086 23 C -0.055 4.055 24 H 0.095 0.905 25 C -0.143 4.143 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.262 0.738 32 H 0.331 0.669 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.887 6.767 6.478 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.196 4.196 3 C 0.084 3.916 4 H 0.045 0.955 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.683 3.317 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.292 5.292 14 C -0.026 4.026 15 H 0.074 0.926 16 C -0.114 4.114 17 C -0.083 4.083 18 C -0.130 4.130 19 C -0.142 4.142 20 C -0.148 4.148 21 C -0.126 4.126 22 C -0.087 4.087 23 C -0.073 4.073 24 H 0.113 0.887 25 C -0.200 4.200 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.331 7.243 6.244 18.069 hybrid contribution -1.071 -0.899 -1.039 1.742 sum -16.403 6.344 5.205 18.341 Atomic orbital electron populations 1.22076 0.98625 1.00183 1.00859 1.22745 0.92823 1.01938 1.02083 1.19561 0.96682 0.87950 0.87395 0.95529 1.20977 0.89035 1.40307 1.03194 0.90186 1.24899 0.94662 0.95061 0.98438 1.69932 1.10043 1.45656 1.28075 0.87394 0.82269 0.78046 0.83964 1.20831 1.21513 1.17353 1.60688 1.27694 1.32649 1.08153 1.22388 0.91889 0.94547 0.93745 0.92643 1.21170 0.98521 0.92852 0.98903 1.20796 0.96923 0.94636 0.95971 1.20654 0.97896 0.94341 1.00145 1.20970 0.98166 0.99759 0.95324 1.20947 1.00952 0.95704 0.97196 1.20572 0.97571 0.94904 0.99534 1.20568 0.96443 0.96463 0.95178 1.20819 0.97082 0.90825 0.98616 0.88683 1.21824 0.98656 0.98690 1.00858 0.93690 0.94104 0.92885 0.91822 0.92511 0.92829 0.85085 0.91427 0.88385 0.86413 0.86335 0.86380 0.86657 0.92219 0.92714 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 8.70 37.16 0.32 -2.40 16 2 C -0.16 -3.23 4.51 -26.73 -0.12 -3.35 16 3 C 0.19 4.33 1.64 -68.86 -0.11 4.22 16 4 H 0.03 0.63 6.32 -51.93 -0.33 0.30 16 5 C -0.50 -13.66 9.31 -34.44 -0.32 -13.98 16 6 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 7 C 0.07 2.00 5.38 -17.82 -0.10 1.91 16 8 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 9 Si 0.86 20.84 25.75 -169.99 -4.38 16.46 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.25 -5.62 5.20 56.52 0.29 -5.33 16 13 N -0.66 -12.77 5.87 -99.49 -0.58 -13.35 16 14 C 0.08 1.40 1.93 -66.32 -0.13 1.27 16 15 H 0.06 0.93 5.14 -51.93 -0.27 0.66 16 16 C -0.08 -1.29 6.08 -26.85 -0.16 -1.45 16 17 C -0.08 -1.24 6.14 -104.20 -0.64 -1.88 16 18 C -0.11 -1.49 10.04 -39.54 -0.40 -1.89 16 19 C -0.12 -1.44 10.05 -39.63 -0.40 -1.84 16 20 C -0.13 -1.47 10.05 -39.62 -0.40 -1.87 16 21 C -0.11 -1.32 9.79 -39.53 -0.39 -1.71 16 22 C -0.09 -1.22 5.60 -104.21 -0.58 -1.80 16 23 C -0.06 -0.77 3.01 -90.75 -0.27 -1.05 16 24 H 0.10 1.39 8.08 -51.93 -0.42 0.97 16 25 C -0.14 -1.70 8.55 37.16 0.32 -1.38 16 26 H 0.04 0.77 8.13 -51.92 -0.42 0.35 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.82 5.01 -51.93 -0.26 0.56 16 29 H 0.06 1.42 4.49 -51.93 -0.23 1.18 16 30 H 0.06 1.15 8.01 -51.93 -0.42 0.73 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.33 5.99 8.11 -39.30 -0.32 5.67 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.81 8.08 -51.93 -0.42 1.39 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 1.19 7.99 -52.49 -0.42 0.77 16 39 H 0.06 0.69 7.76 -51.93 -0.40 0.29 16 40 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 315.94 15.07 4.76 4.76 Total: -1.00 -29.52 315.94 -9.33 -38.86 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.53 Total: 7.03 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -3.38 Total: -27.20 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.19 Total: -39.90 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.38 Total: 16.46 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.52 -9.33 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698934570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.748 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds