Wall clock time and date at job start Mon Mar 30 2020 07:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 H 1.08992 * 109.46994 * 305.44873 * 3 2 1 5 5 C 1.50697 * 109.46864 * 185.44905 * 3 2 1 6 6 H 1.08006 * 120.00276 * 244.29358 * 5 3 2 7 7 C 1.37878 * 120.00143 * 64.29619 * 5 3 2 8 8 N 1.31512 * 120.00336 * 191.24501 * 7 5 3 9 9 Si 1.86804 * 119.99872 * 11.24299 * 7 5 3 10 10 H 1.48490 * 109.47068 * 92.74153 * 9 7 5 11 11 H 1.48499 * 109.46823 * 212.74442 * 9 7 5 12 12 H 1.48504 * 109.46828 * 332.74058 * 9 7 5 13 13 N 1.46906 * 109.46917 * 65.45119 * 3 2 1 14 14 C 1.46896 * 110.99762 * 266.02462 * 13 3 2 15 15 H 1.08998 * 110.72723 * 42.50026 * 14 13 3 16 16 C 1.54341 * 110.82603 * 279.09152 * 14 13 3 17 17 C 1.51372 * 105.17178 * 215.43087 * 16 14 13 18 18 C 1.38497 * 130.39001 * 197.16417 * 17 16 14 19 19 C 1.38096 * 120.21300 * 180.02562 * 18 17 16 20 20 C 1.38260 * 119.93863 * 0.30112 * 19 18 17 21 21 C 1.38110 * 119.92825 * 359.44260 * 20 19 18 22 22 C 1.38216 * 109.75722 * 17.18652 * 17 16 14 23 23 C 1.51367 * 109.75922 * 359.97438 * 22 17 16 24 24 H 1.09004 * 110.38452 * 101.78326 * 23 22 17 25 25 C 1.53000 * 110.30553 * 223.88677 * 23 22 17 26 26 H 1.09008 * 109.46959 * 61.63906 * 1 2 3 27 27 H 1.08997 * 109.47017 * 181.63714 * 1 2 3 28 28 H 1.08999 * 109.47836 * 301.64184 * 1 2 3 29 29 H 1.08993 * 109.47509 * 240.00127 * 2 1 3 30 30 H 1.09001 * 109.46980 * 119.99479 * 2 1 3 31 31 H 0.96995 * 120.00232 * 180.02562 * 8 7 5 32 32 H 1.00893 * 111.00061 * 29.98410 * 13 3 2 33 33 H 1.08995 * 110.30597 * 96.50521 * 16 14 13 34 34 H 1.09006 * 110.38653 * 334.39423 * 16 14 13 35 35 H 1.07999 * 119.89249 * 0.02578 * 18 17 16 36 36 H 1.08002 * 120.03490 * 180.02562 * 19 18 17 37 37 H 1.07997 * 120.03538 * 179.70434 * 20 19 18 38 38 H 1.07995 * 119.89016 * 180.27966 * 21 20 19 39 39 H 1.08999 * 109.47494 * 175.75113 * 25 23 22 40 40 H 1.09004 * 109.47051 * 295.75053 * 25 23 22 41 41 H 1.09002 * 109.46661 * 55.74569 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5991 1.9837 -0.8371 5 6 3.5409 1.4447 -0.1349 6 1 4.1548 1.8243 0.6685 7 6 4.1305 0.9621 -1.2841 8 7 5.4289 0.7564 -1.3206 9 14 3.0849 0.6003 -2.7892 10 1 3.0573 1.7945 -3.6714 11 1 3.6644 -0.5490 -3.5298 12 1 1.7018 0.2678 -2.3628 13 7 1.6606 2.0960 1.2599 14 6 0.3937 2.8251 1.1140 15 1 -0.3265 2.2370 0.5452 16 6 0.6248 4.1998 0.4517 17 6 -0.3693 5.1303 1.1131 18 6 -0.8334 6.3744 0.7193 19 6 -1.7546 7.0500 1.4952 20 6 -2.2109 6.4862 2.6723 21 6 -1.7533 5.2434 3.0639 22 6 -0.8301 4.5639 2.2866 23 6 -0.1779 3.2138 2.4939 24 1 0.6248 3.2886 3.2276 25 6 -1.2167 2.1863 2.9477 26 1 -0.3633 0.4882 -0.9044 27 1 -0.3633 -1.0272 0.0294 28 1 -0.3635 0.5391 0.8748 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8437 0.4172 -2.1291 32 1 1.6080 1.4266 2.0129 33 1 0.4326 4.1407 -0.6195 34 1 1.6432 4.5429 0.6343 35 1 -0.4737 6.8175 -0.1976 36 1 -2.1149 8.0198 1.1851 37 1 -2.9277 7.0153 3.2827 38 1 -2.1136 4.8017 3.9811 39 1 -0.7491 1.2044 3.0199 40 1 -1.6104 2.4739 3.9226 41 1 -2.0308 2.1488 2.2238 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698934570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:12 Heat of formation + Delta-G solvation = 3.418884 kcal Electronic energy + Delta-G solvation = -19714.743249 eV Core-core repulsion = 16979.099927 eV Total energy + Delta-G solvation = -2735.643323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28220 -38.70029 -36.31481 -34.18482 -33.09778 -32.04994 -30.53046 -29.50873 -27.87423 -25.37498 -24.40480 -22.76434 -22.12620 -21.29558 -20.88798 -18.79571 -17.53062 -16.83711 -16.61955 -16.18124 -16.00572 -15.34630 -15.17686 -14.73088 -14.44033 -14.33788 -14.09565 -13.76703 -13.65623 -13.39728 -13.29251 -12.95655 -12.76065 -12.61561 -12.38675 -12.37533 -12.09072 -11.84409 -11.70019 -11.49759 -11.42289 -11.24925 -11.05105 -10.55989 -9.66690 -9.37807 -8.96154 -8.25008 -6.23211 0.50358 0.53071 1.32541 1.36964 1.44893 2.36476 2.90252 3.09156 3.39663 3.49184 3.73661 4.08794 4.19009 4.23594 4.28005 4.32139 4.38688 4.43332 4.49222 4.56444 4.65657 4.70049 4.79950 4.83066 4.85263 5.00259 5.04866 5.11222 5.15694 5.18795 5.21649 5.26751 5.32537 5.45061 5.54492 5.60322 5.65581 5.74255 5.84624 6.10706 6.17516 6.75303 6.82105 6.83935 7.40785 8.92592 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027250 B = 0.005651 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.280597 B = 4953.793659 C = 5378.780641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.155 4.155 3 C 0.201 3.799 4 H 0.021 0.979 5 C -0.500 4.500 6 H 0.032 0.968 7 C 0.013 3.987 8 N -0.950 5.950 9 Si 0.921 3.079 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.218 1.218 13 N -0.673 5.673 14 C 0.086 3.914 15 H 0.061 0.939 16 C -0.078 4.078 17 C -0.110 4.110 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.098 4.098 23 C -0.048 4.048 24 H 0.085 0.915 25 C -0.138 4.138 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.263 0.737 32 H 0.338 0.662 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.123 0.877 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.139 0.861 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.798 7.175 7.155 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.194 4.194 3 C 0.092 3.908 4 H 0.039 0.961 5 C -0.539 4.539 6 H 0.050 0.950 7 C -0.184 4.184 8 N -0.591 5.591 9 Si 0.745 3.255 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.140 1.140 13 N -0.304 5.304 14 C -0.023 4.023 15 H 0.079 0.921 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.143 4.143 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.129 4.129 22 C -0.098 4.098 23 C -0.067 4.067 24 H 0.103 0.897 25 C -0.195 4.195 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.157 0.843 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.156 0.844 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.272 7.657 6.945 21.869 hybrid contribution 0.195 -0.897 -1.135 1.460 sum -19.077 6.760 5.809 21.057 Atomic orbital electron populations 1.21989 0.95227 1.02048 1.01658 1.22590 0.95802 0.99669 1.01328 1.19293 0.93193 0.89689 0.88656 0.96091 1.21287 0.91759 1.39064 1.01756 0.95013 1.25734 0.95774 0.95140 1.01734 1.70092 1.12288 1.47700 1.29064 0.86348 0.82069 0.77613 0.79454 1.20939 1.21479 1.14050 1.60479 1.30166 1.32720 1.07036 1.22399 0.90457 0.93750 0.95744 0.92144 1.21069 0.97704 0.93972 0.98807 1.20720 0.97741 0.95587 0.96954 1.20879 0.98521 0.93975 1.00929 1.21334 0.97104 1.00636 0.95071 1.21388 1.00583 0.95239 0.97026 1.20879 0.96753 0.95245 0.99983 1.20641 0.97334 0.96482 0.95351 1.20701 0.97444 0.91965 0.96555 0.89699 1.21796 0.97869 0.97910 1.01905 0.93631 0.91758 0.91355 0.93371 0.92597 0.92849 0.84322 0.92274 0.91455 0.85879 0.83562 0.83124 0.84365 0.92017 0.90692 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 8.70 71.98 0.63 -4.07 16 2 C -0.15 -6.17 4.51 30.60 0.14 -6.04 16 3 C 0.20 9.11 1.64 44.17 0.07 9.18 16 4 H 0.02 0.99 6.32 -2.39 -0.02 0.97 16 5 C -0.50 -28.71 9.31 25.60 0.24 -28.48 16 6 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 7 C 0.01 0.75 5.38 84.66 0.46 1.20 16 8 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 9 Si 0.92 43.69 25.75 68.60 1.77 45.45 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.22 -9.16 5.20 99.48 0.52 -8.65 16 13 N -0.67 -26.39 5.87 -468.68 -2.75 -29.14 16 14 C 0.09 2.81 1.93 45.82 0.09 2.90 16 15 H 0.06 1.93 5.14 -2.39 -0.01 1.92 16 16 C -0.08 -2.68 6.08 30.52 0.19 -2.49 16 17 C -0.11 -3.24 6.14 -19.59 -0.12 -3.36 16 18 C -0.13 -3.17 10.04 22.30 0.22 -2.94 16 19 C -0.12 -2.49 10.05 22.24 0.22 -2.26 16 20 C -0.12 -2.32 10.05 22.24 0.22 -2.09 16 21 C -0.11 -2.35 9.79 22.30 0.22 -2.13 16 22 C -0.10 -2.59 5.60 -19.60 -0.11 -2.70 16 23 C -0.05 -1.29 3.01 -10.88 -0.03 -1.32 16 24 H 0.08 2.43 8.08 -2.38 -0.02 2.41 16 25 C -0.14 -2.86 8.55 71.98 0.62 -2.25 16 26 H 0.04 1.41 8.13 -2.38 -0.02 1.39 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 1.89 5.01 -2.39 -0.01 1.88 16 29 H 0.05 2.06 4.49 -2.39 -0.01 2.05 16 30 H 0.06 2.21 8.01 -2.39 -0.02 2.20 16 31 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 32 H 0.34 12.24 8.11 -89.70 -0.73 11.52 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 2.66 8.08 -2.38 -0.02 2.64 16 35 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.14 2.25 7.99 -2.91 -0.02 2.23 16 39 H 0.06 1.26 7.76 -2.39 -0.02 1.24 16 40 H 0.07 1.26 8.08 -2.39 -0.02 1.25 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -67.11 315.94 2.45 -64.66 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.09 Total: 25.90 kcal Atomic # 6 Polarization: -49.90 SS G_CDS: 3.05 Total: -46.86 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -2.45 Total: -89.15 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.77 Total: 45.45 kcal Total: -67.11 2.45 -64.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698934570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.078 kcal (2) G-P(sol) polarization free energy of solvation -67.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds