Wall clock time and date at job start Mon Mar 30 2020 07:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46889 * 2 1 4 4 N 1.46502 * 109.47249 * 185.93060 * 3 2 1 5 5 C 1.36938 * 119.99968 * 91.00138 * 4 3 2 6 6 H 1.08004 * 119.99197 * 165.86551 * 5 4 3 7 7 C 1.38800 * 120.00396 * 345.86887 * 5 4 3 8 8 N 1.31628 * 119.99963 * 1.04201 * 7 5 4 9 9 Si 1.86800 * 120.00325 * 181.04194 * 7 5 4 10 10 H 1.48498 * 109.47345 * 59.99897 * 9 7 5 11 11 H 1.48502 * 109.47165 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47297 * 299.99914 * 9 7 5 13 13 C 1.46499 * 119.99874 * 271.00996 * 4 3 2 14 14 C 1.53002 * 109.47003 * 263.52882 * 13 4 3 15 15 C 1.50698 * 115.55021 * 273.41678 * 14 13 4 16 16 C 1.38240 * 120.00205 * 147.35141 * 15 14 13 17 17 C 1.38229 * 119.99978 * 179.74341 * 16 15 14 18 18 C 1.38243 * 119.99966 * 0.52324 * 17 16 15 19 19 C 1.38236 * 119.99746 * 359.75143 * 18 17 16 20 20 C 1.38228 * 120.00069 * 359.97176 * 19 18 17 21 21 C 1.53002 * 117.50165 * 127.70372 * 14 13 4 22 22 C 1.52999 * 117.49824 * 59.08013 * 14 13 4 23 23 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47678 * 300.00173 * 1 2 3 25 25 H 1.09004 * 109.46976 * 60.00458 * 1 2 3 26 26 H 1.08998 * 109.47236 * 239.99590 * 2 1 3 27 27 H 1.09004 * 109.46976 * 119.99542 * 2 1 3 28 28 H 1.08996 * 109.47404 * 65.92738 * 3 2 1 29 29 H 1.09006 * 109.47192 * 305.92221 * 3 2 1 30 30 H 0.96994 * 119.99865 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47350 * 143.53219 * 13 4 3 32 32 H 1.09003 * 109.47344 * 23.52817 * 13 4 3 33 33 H 1.08001 * 119.99735 * 359.97438 * 16 15 14 34 34 H 1.08002 * 120.00566 * 180.29306 * 17 16 15 35 35 H 1.08002 * 119.99943 * 179.77176 * 18 17 16 36 36 H 1.07997 * 119.99558 * 180.02562 * 19 18 17 37 37 H 1.08005 * 120.00140 * 180.02562 * 20 19 18 38 38 H 1.09004 * 117.49446 * 359.97438 * 21 14 13 39 39 H 1.08996 * 117.49904 * 145.01835 * 21 14 13 40 40 H 1.08999 * 117.50380 * 214.98272 * 22 14 13 41 41 H 1.09006 * 117.50088 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4979 1.4450 -0.1427 5 6 4.0639 1.5078 -1.3881 6 1 5.1138 1.7385 -1.4930 7 6 3.2884 1.2750 -2.5154 8 7 2.0044 1.0142 -2.3886 9 14 4.0666 1.3319 -4.2126 10 1 5.1409 0.3103 -4.2991 11 1 3.0329 1.0506 -5.2410 12 1 4.6450 2.6794 -4.4471 13 6 4.3505 1.3803 1.0469 14 6 4.7842 2.7936 1.4410 15 6 6.0228 3.3086 0.7542 16 6 6.1472 4.6563 0.4724 17 6 7.2856 5.1294 -0.1528 18 6 8.2950 4.2534 -0.5061 19 6 8.1680 2.9050 -0.2294 20 6 7.0321 2.4327 0.4009 21 6 4.5464 3.2278 2.8888 22 6 3.6836 3.8058 1.7652 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.7658 1.9248 0.9382 29 1 1.5925 1.9860 -0.8323 30 1 1.4626 0.8511 -3.1764 31 1 5.2319 0.7770 0.8299 32 1 3.7943 0.9286 1.8684 33 1 5.3565 5.3400 0.7442 34 1 7.3849 6.1830 -0.3687 35 1 9.1828 4.6226 -0.9979 36 1 8.9568 2.2207 -0.5051 37 1 6.9331 1.3792 0.6175 38 1 4.0805 2.5066 3.5603 39 1 5.2860 3.8858 3.3448 40 1 3.8555 4.8442 1.4820 41 1 2.6505 3.4649 1.6972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703915321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:10 Heat of formation + Delta-G solvation = 77.489676 kcal Electronic energy + Delta-G solvation = -20015.459782 eV Core-core repulsion = 17283.028410 eV Total energy + Delta-G solvation = -2732.431372 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.40262 -37.01153 -35.29225 -31.74203 -31.04750 -30.38046 -30.05438 -26.30835 -25.36311 -22.85342 -22.47119 -21.55749 -21.37303 -19.79098 -18.77894 -16.78079 -16.54020 -15.05375 -14.72068 -14.60512 -14.17893 -13.62293 -13.57398 -13.25851 -13.04149 -12.89093 -12.33681 -12.23337 -11.86459 -11.26080 -11.12340 -10.99649 -10.91948 -10.70864 -10.64599 -10.55166 -10.25640 -10.02694 -9.93207 -9.68524 -9.66404 -9.38329 -9.22865 -8.47013 -8.24262 -8.00536 -6.65237 -5.50880 -3.01183 1.81116 1.84943 3.45029 3.49695 3.51572 4.08601 4.50221 4.65558 5.07163 5.24545 5.33130 5.36966 5.46508 5.50548 5.56692 5.71419 5.88029 5.96152 5.99222 6.04331 6.30025 6.32838 6.35455 6.38859 6.45494 6.54945 6.59710 6.64568 6.70075 6.77414 6.89192 6.92276 6.99633 7.06084 7.18974 7.35953 7.45205 7.46444 7.81910 8.03951 8.18000 8.60563 9.41810 10.00923 10.44478 11.42078 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.008742 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.517990 B = 3202.006906 C = 4419.088331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 C 0.169 3.831 4 N -0.592 5.592 5 C -0.225 4.225 6 H 0.071 0.929 7 C -0.010 4.010 8 N -0.909 5.909 9 Si 0.902 3.098 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.288 1.288 13 C 0.184 3.816 14 C -0.099 4.099 15 C -0.011 4.011 16 C -0.123 4.123 17 C -0.122 4.122 18 C -0.138 4.138 19 C -0.121 4.121 20 C -0.107 4.107 21 C -0.177 4.177 22 C -0.157 4.157 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.006 0.994 28 H -0.008 1.008 29 H 0.109 0.891 30 H 0.247 0.753 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 4.307 7.470 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.154 4.154 3 C 0.044 3.956 4 N -0.312 5.312 5 C -0.355 4.355 6 H 0.089 0.911 7 C -0.205 4.205 8 N -0.558 5.558 9 Si 0.733 3.267 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C 0.056 3.944 14 C -0.102 4.102 15 C -0.011 4.011 16 C -0.141 4.141 17 C -0.140 4.140 18 C -0.156 4.156 19 C -0.139 4.139 20 C -0.125 4.125 21 C -0.215 4.215 22 C -0.194 4.194 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.025 0.975 28 H 0.010 0.990 29 H 0.127 0.873 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.790 4.263 7.297 10.244 hybrid contribution 0.369 0.051 -1.064 1.127 sum 6.159 4.314 6.234 9.767 Atomic orbital electron populations 1.21576 0.98575 0.98785 1.00140 1.22071 0.92989 1.00699 0.99631 1.21174 0.82490 0.94560 0.97337 1.44064 1.01353 1.84897 1.00841 1.19278 0.94395 1.38811 0.82988 0.91120 1.24815 0.96181 1.01804 0.97655 1.70100 1.04375 1.54544 1.26766 0.86347 0.77959 0.77741 0.84633 1.21444 1.21840 1.21429 1.20297 0.94434 0.89697 0.89977 1.21286 0.94122 0.99744 0.95039 1.19045 0.93347 0.92649 0.96078 1.21026 0.97498 0.95534 0.99999 1.20995 0.94305 0.99131 0.99612 1.20981 0.99083 0.93803 1.01722 1.21044 0.97967 0.95433 0.99433 1.20990 0.93213 0.99705 0.98631 1.23069 1.03439 1.03852 0.91136 1.22887 0.96969 0.97894 1.01682 0.95402 0.95412 0.92458 0.89476 0.97523 0.98954 0.87332 0.94196 0.93420 0.93786 0.86500 0.86872 0.86943 0.86674 0.85996 0.89131 0.89762 0.89613 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.91 37.16 0.37 -2.28 16 2 C -0.11 -2.61 5.49 -26.74 -0.15 -2.76 16 3 C 0.17 4.00 4.65 -4.04 -0.02 3.98 16 4 N -0.59 -14.17 2.41 -173.24 -0.42 -14.59 16 5 C -0.23 -5.96 9.77 -15.06 -0.15 -6.11 16 6 H 0.07 1.89 7.26 -52.48 -0.38 1.51 16 7 C -0.01 -0.26 5.38 -17.43 -0.09 -0.36 16 8 N -0.91 -24.79 7.60 55.49 0.42 -24.37 16 9 Si 0.90 22.11 29.55 -169.99 -5.02 17.09 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 13 C 0.18 3.73 5.53 -4.04 -0.02 3.71 16 14 C -0.10 -1.78 2.18 -155.66 -0.34 -2.11 16 15 C -0.01 -0.20 5.41 -104.62 -0.57 -0.77 16 16 C -0.12 -2.07 9.38 -39.58 -0.37 -2.44 16 17 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 18 C -0.14 -2.05 10.05 -39.58 -0.40 -2.44 16 19 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 20 C -0.11 -1.86 8.77 -39.59 -0.35 -2.21 16 21 C -0.18 -2.67 9.87 -26.73 -0.26 -2.93 16 22 C -0.16 -2.67 9.38 -26.73 -0.25 -2.93 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.09 2.28 6.52 -51.93 -0.34 1.95 16 27 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 28 H -0.01 -0.17 6.41 -51.93 -0.33 -0.50 16 29 H 0.11 2.91 5.72 -51.93 -0.30 2.61 16 30 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.05 0.97 6.00 -51.93 -0.31 0.66 16 32 H 0.04 0.85 7.77 -51.93 -0.40 0.45 16 33 H 0.12 1.84 5.93 -52.49 -0.31 1.53 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.12 2.05 6.36 -52.48 -0.33 1.72 16 38 H 0.09 1.27 8.05 -51.93 -0.42 0.86 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.09 1.38 6.08 -51.93 -0.32 1.06 16 41 H 0.10 1.78 6.27 -51.93 -0.33 1.46 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -27.45 322.29 -9.84 -37.29 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.29 Total: 3.91 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -3.39 Total: -24.19 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.00 Total: -38.96 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.45 -9.84 -37.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703915321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.782 kcal (2) G-P(sol) polarization free energy of solvation -27.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds