Wall clock time and date at job start Mon Mar 30 2020 07:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 115.54731 * 2 1 4 4 C 1.52999 * 117.52182 * 214.30307 * 2 1 3 5 5 C 1.52992 * 117.50195 * 145.66934 * 2 1 3 6 6 C 1.53006 * 117.50011 * 0.02562 * 5 2 1 7 7 C 1.53005 * 117.50254 * 215.00513 * 5 2 1 8 8 N 1.46902 * 109.47125 * 180.02562 * 7 5 2 9 9 C 1.46901 * 110.99684 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47023 * 179.97438 * 9 8 7 11 11 C 1.38636 * 119.75027 * 269.72536 * 10 9 8 12 12 C 1.37615 * 120.24663 * 179.76269 * 11 10 9 13 13 C 1.40718 * 119.74669 * 0.52763 * 12 11 10 14 14 C 1.41398 * 120.24385 * 179.74071 * 13 12 11 15 15 H 1.08000 * 120.00138 * 204.37946 * 14 13 12 16 16 C 1.39943 * 120.00131 * 24.38649 * 14 13 12 17 17 N 1.30824 * 119.99955 * 17.86094 * 16 14 13 18 18 Si 1.86795 * 119.99962 * 197.86337 * 16 14 13 19 19 H 1.48501 * 109.47235 * 60.00233 * 18 16 14 20 20 H 1.48501 * 109.46895 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47081 * 299.99643 * 18 16 14 22 22 C 1.40714 * 119.51192 * 359.73148 * 13 12 11 23 23 C 1.37622 * 119.74611 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.47296 * 274.41553 * 1 2 3 25 25 H 1.09004 * 109.47322 * 34.41674 * 1 2 3 26 26 H 1.08998 * 109.46844 * 154.41558 * 1 2 3 27 27 H 1.09000 * 117.49468 * 0.02562 * 4 2 1 28 28 H 1.08995 * 117.50040 * 145.02682 * 4 2 1 29 29 H 1.09006 * 109.46715 * 59.99940 * 6 5 2 30 30 H 1.08993 * 109.47296 * 179.97438 * 6 5 2 31 31 H 1.08998 * 109.46735 * 300.00054 * 6 5 2 32 32 H 1.09000 * 109.46614 * 299.99778 * 7 5 2 33 33 H 1.08997 * 109.47092 * 59.99994 * 7 5 2 34 34 H 1.00894 * 110.99748 * 303.95090 * 8 7 5 35 35 H 1.09005 * 109.47393 * 299.99809 * 9 8 7 36 36 H 1.08996 * 109.47075 * 60.00019 * 9 8 7 37 37 H 1.07999 * 119.87401 * 0.02562 * 11 10 9 38 38 H 1.08005 * 120.12982 * 180.28006 * 12 11 10 39 39 H 0.96997 * 120.00012 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.13081 * 180.02562 * 22 13 12 41 41 H 1.07996 * 119.87759 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2370 -1.1209 -0.7647 5 6 2.2365 -1.1206 0.7653 6 6 1.3589 -2.1560 1.4717 7 6 3.5488 -0.7752 1.4722 8 7 4.0717 -1.9713 2.1459 9 6 5.3344 -1.6768 2.8364 10 6 5.8388 -2.9245 3.5146 11 6 5.4617 -3.1981 4.8204 12 6 5.9123 -4.3369 5.4479 13 6 6.7680 -5.2194 4.7630 14 6 7.2417 -6.3898 5.3995 15 1 8.1621 -6.8489 5.0701 16 6 6.5179 -6.9533 6.4564 17 7 5.2623 -6.6317 6.6341 18 14 7.3446 -8.1646 7.6134 19 1 8.4971 -7.5057 8.2790 20 1 6.3700 -8.6119 8.6406 21 1 7.8241 -9.3386 6.8408 22 6 7.1485 -4.9288 3.4398 23 6 6.6808 -3.7872 2.8299 24 1 -0.3634 0.0791 1.0246 25 1 -0.3634 0.8478 -0.5809 26 1 -0.3633 -0.9269 -0.4438 27 1 1.6120 -1.8583 -1.2683 28 1 3.1721 -0.8748 -1.2677 29 1 0.7299 -2.6603 0.7380 30 1 1.9923 -2.8887 1.9716 31 1 0.7293 -1.6567 2.2081 32 1 4.2751 -0.4249 0.7388 33 1 3.3695 0.0080 2.2087 34 1 3.3904 -2.3534 2.7846 35 1 6.0729 -1.3326 2.1123 36 1 5.1678 -0.9001 3.5827 37 1 4.8083 -2.5171 5.3455 38 1 5.6137 -4.5505 6.4636 39 1 4.7608 -7.0220 7.3669 40 1 7.8045 -5.5994 2.9046 41 1 6.9712 -3.5623 1.8143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704278504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:58 Heat of formation + Delta-G solvation = 27.659821 kcal Electronic energy + Delta-G solvation = -18492.973373 eV Core-core repulsion = 15758.381217 eV Total energy + Delta-G solvation = -2734.592157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.94496 -37.64501 -35.17606 -33.47541 -30.59832 -29.28096 -29.00503 -27.96963 -26.74767 -24.59578 -22.69903 -21.01542 -20.92504 -19.84447 -18.51793 -17.26203 -16.12606 -15.29380 -15.00263 -14.66651 -14.24589 -13.78798 -13.77285 -13.40966 -13.30830 -12.81262 -12.69480 -12.36280 -12.03504 -11.91356 -11.72351 -11.71387 -11.49200 -11.34815 -11.04423 -10.95061 -10.88021 -10.53710 -10.32226 -9.85704 -9.58010 -9.45296 -9.35545 -9.10159 -7.96602 -7.41673 -7.26214 -6.74149 -4.32434 2.77464 3.07011 3.09712 3.12043 3.21165 3.69201 3.94316 4.41904 4.65196 4.77101 4.80991 5.03068 5.19584 5.21310 5.48615 5.61876 5.68990 5.73168 5.77910 5.83586 5.88576 5.90434 5.93456 5.96648 6.04505 6.19675 6.21646 6.32246 6.39607 6.46128 6.47540 6.97661 7.09981 7.30940 7.41173 7.48156 7.64665 7.80260 7.93298 8.08139 8.18072 8.33620 8.66754 8.92292 9.00996 10.20355 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037124 B = 0.003539 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.051580 B = 7908.920708 C = 8252.454102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.158 4.158 3 H 0.099 0.901 4 C -0.165 4.165 5 C -0.113 4.113 6 C -0.119 4.119 7 C 0.094 3.906 8 N -0.682 5.682 9 C 0.124 3.876 10 C -0.213 4.213 11 C -0.096 4.096 12 C -0.166 4.166 13 C 0.112 3.888 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.793 5.793 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.228 4.228 23 C -0.068 4.068 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.342 0.658 35 H 0.060 0.940 36 H 0.018 0.982 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.280 0.720 40 H 0.090 0.910 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.958 9.451 -7.363 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.176 4.176 3 H 0.117 0.883 4 C -0.202 4.202 5 C -0.113 4.113 6 C -0.176 4.176 7 C -0.035 4.035 8 N -0.315 5.315 9 C -0.004 4.004 10 C -0.215 4.215 11 C -0.115 4.115 12 C -0.185 4.185 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.418 5.418 18 Si 0.732 3.268 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.248 4.248 23 C -0.087 4.087 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.163 0.837 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.861 9.152 -7.770 13.828 hybrid contribution -0.040 -0.080 1.224 1.228 sum -6.901 9.072 -6.545 13.144 Atomic orbital electron populations 1.21305 0.93065 1.01585 1.01620 1.22451 0.95125 0.94440 1.05617 0.88289 1.23221 1.02079 1.00835 0.94039 1.21534 0.97094 0.99220 0.93471 1.21338 0.98515 0.97781 1.00012 1.21427 0.93269 0.91829 0.96994 1.60718 1.06525 1.28375 1.35901 1.20554 0.90415 0.94795 0.94614 1.18901 1.07680 0.99380 0.95550 1.20522 0.99477 0.97154 0.94321 1.21266 1.03114 0.93872 1.00295 1.17617 0.89652 0.91630 0.90129 1.19568 1.07731 1.08559 1.13481 0.90541 1.25902 0.94132 0.96894 0.97218 1.69824 1.07352 1.37496 1.27155 0.86387 0.80017 0.80566 0.79854 1.18866 1.20375 1.19019 1.20975 1.08507 0.99514 0.95811 1.20333 0.97005 0.94443 0.96917 0.92343 0.92579 0.92573 0.89056 0.89047 0.92651 0.90472 0.92761 0.91409 0.95669 0.83725 0.92171 0.96432 0.89971 0.86565 0.90890 0.89136 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.21 37.16 0.34 -0.71 16 2 C -0.16 -1.62 6.13 -90.63 -0.56 -2.18 16 3 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.16 -1.83 9.47 -26.73 -0.25 -2.09 16 5 C -0.11 -1.37 2.57 -154.51 -0.40 -1.77 16 6 C -0.12 -1.45 8.56 37.16 0.32 -1.13 16 7 C 0.09 1.28 5.87 -3.82 -0.02 1.26 16 8 N -0.68 -11.27 6.10 -115.05 -0.70 -11.97 16 9 C 0.12 2.22 5.80 -4.98 -0.03 2.20 16 10 C -0.21 -4.67 5.42 -104.33 -0.56 -5.23 16 11 C -0.10 -2.23 9.67 -39.66 -0.38 -2.61 16 12 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 13 C 0.11 3.03 5.58 -106.82 -0.60 2.43 16 14 C -0.46 -12.44 9.05 -37.74 -0.34 -12.78 16 15 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 16 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.60 10.95 55.55 0.61 -19.99 16 18 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 22 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 23 C -0.07 -1.56 9.67 -39.66 -0.38 -1.94 16 24 H 0.06 0.51 8.02 -51.93 -0.42 0.10 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.49 7.77 -51.93 -0.40 0.09 16 27 H 0.09 0.97 7.96 -51.93 -0.41 0.56 16 28 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 29 H 0.05 0.62 7.77 -51.93 -0.40 0.22 16 30 H 0.08 1.07 5.84 -51.93 -0.30 0.77 16 31 H 0.05 0.61 8.02 -51.93 -0.42 0.19 16 32 H 0.07 0.91 7.90 -51.93 -0.41 0.50 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.34 5.76 6.54 -39.29 -0.26 5.50 16 35 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.02 0.30 8.08 -51.93 -0.42 -0.12 16 37 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.12 3.13 6.15 -52.48 -0.32 2.81 16 39 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 333.57 15.07 5.03 5.03 Total: -1.00 -26.92 333.57 -10.46 -37.38 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.69 Total: 9.31 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: -3.67 Total: -33.49 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: -0.09 Total: -31.96 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.92 -10.46 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704278504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.041 kcal (2) G-P(sol) polarization free energy of solvation -26.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds