Wall clock time and date at job start Mon Mar 30 2020 07:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 115.54731 * 2 1 4 4 C 1.52999 * 117.52182 * 214.30307 * 2 1 3 5 5 C 1.52992 * 117.50195 * 145.66934 * 2 1 3 6 6 C 1.53006 * 117.50011 * 0.02562 * 5 2 1 7 7 C 1.53005 * 117.50254 * 215.00513 * 5 2 1 8 8 N 1.46902 * 109.47125 * 180.02562 * 7 5 2 9 9 C 1.46901 * 110.99684 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47023 * 179.97438 * 9 8 7 11 11 C 1.38636 * 119.75027 * 269.72536 * 10 9 8 12 12 C 1.37615 * 120.24663 * 179.76269 * 11 10 9 13 13 C 1.40718 * 119.74669 * 0.52763 * 12 11 10 14 14 C 1.41398 * 120.24385 * 179.74071 * 13 12 11 15 15 H 1.08000 * 120.00138 * 204.37946 * 14 13 12 16 16 C 1.39943 * 120.00131 * 24.38649 * 14 13 12 17 17 N 1.30824 * 119.99955 * 17.86094 * 16 14 13 18 18 Si 1.86795 * 119.99962 * 197.86337 * 16 14 13 19 19 H 1.48501 * 109.47235 * 60.00233 * 18 16 14 20 20 H 1.48501 * 109.46895 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47081 * 299.99643 * 18 16 14 22 22 C 1.40714 * 119.51192 * 359.73148 * 13 12 11 23 23 C 1.37622 * 119.74611 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.47296 * 274.41553 * 1 2 3 25 25 H 1.09004 * 109.47322 * 34.41674 * 1 2 3 26 26 H 1.08998 * 109.46844 * 154.41558 * 1 2 3 27 27 H 1.09000 * 117.49468 * 0.02562 * 4 2 1 28 28 H 1.08995 * 117.50040 * 145.02682 * 4 2 1 29 29 H 1.09006 * 109.46715 * 59.99940 * 6 5 2 30 30 H 1.08993 * 109.47296 * 179.97438 * 6 5 2 31 31 H 1.08998 * 109.46735 * 300.00054 * 6 5 2 32 32 H 1.09000 * 109.46614 * 299.99778 * 7 5 2 33 33 H 1.08997 * 109.47092 * 59.99994 * 7 5 2 34 34 H 1.00894 * 110.99748 * 303.95090 * 8 7 5 35 35 H 1.09005 * 109.47393 * 299.99809 * 9 8 7 36 36 H 1.08996 * 109.47075 * 60.00019 * 9 8 7 37 37 H 1.07999 * 119.87401 * 0.02562 * 11 10 9 38 38 H 1.08005 * 120.12982 * 180.28006 * 12 11 10 39 39 H 0.96997 * 120.00012 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.13081 * 180.02562 * 22 13 12 41 41 H 1.07996 * 119.87759 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2370 -1.1209 -0.7647 5 6 2.2365 -1.1206 0.7653 6 6 1.3589 -2.1560 1.4717 7 6 3.5488 -0.7752 1.4722 8 7 4.0717 -1.9713 2.1459 9 6 5.3344 -1.6768 2.8364 10 6 5.8388 -2.9245 3.5146 11 6 5.4617 -3.1981 4.8204 12 6 5.9123 -4.3369 5.4479 13 6 6.7680 -5.2194 4.7630 14 6 7.2417 -6.3898 5.3995 15 1 8.1621 -6.8489 5.0701 16 6 6.5179 -6.9533 6.4564 17 7 5.2623 -6.6317 6.6341 18 14 7.3446 -8.1646 7.6134 19 1 8.4971 -7.5057 8.2790 20 1 6.3700 -8.6119 8.6406 21 1 7.8241 -9.3386 6.8408 22 6 7.1485 -4.9288 3.4398 23 6 6.6808 -3.7872 2.8299 24 1 -0.3634 0.0791 1.0246 25 1 -0.3634 0.8478 -0.5809 26 1 -0.3633 -0.9269 -0.4438 27 1 1.6120 -1.8583 -1.2683 28 1 3.1721 -0.8748 -1.2677 29 1 0.7299 -2.6603 0.7380 30 1 1.9923 -2.8887 1.9716 31 1 0.7293 -1.6567 2.2081 32 1 4.2751 -0.4249 0.7388 33 1 3.3695 0.0080 2.2087 34 1 3.3904 -2.3534 2.7846 35 1 6.0729 -1.3326 2.1123 36 1 5.1678 -0.9001 3.5827 37 1 4.8083 -2.5171 5.3455 38 1 5.6137 -4.5505 6.4636 39 1 4.7608 -7.0220 7.3669 40 1 7.8045 -5.5994 2.9046 41 1 6.9712 -3.5623 1.8143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704278504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:58 Heat of formation + Delta-G solvation = 15.114629 kcal Electronic energy + Delta-G solvation = -18493.517374 eV Core-core repulsion = 15758.381217 eV Total energy + Delta-G solvation = -2735.136157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.96860 -39.37737 -36.63127 -35.22522 -32.20522 -31.13850 -30.19320 -28.84361 -28.26337 -26.04873 -24.20171 -22.86812 -21.82725 -21.63035 -19.45527 -19.20085 -17.45410 -16.95610 -16.21629 -15.86126 -15.81615 -15.49207 -15.19273 -14.66186 -14.37952 -14.23371 -13.80029 -13.75816 -13.62768 -13.27724 -13.06301 -12.90063 -12.81267 -12.69493 -12.56853 -12.37877 -12.20808 -12.01957 -11.82981 -11.39850 -11.25402 -11.00192 -10.67780 -10.39642 -9.38853 -9.25282 -9.11511 -8.62519 -6.31875 0.96299 1.17567 1.37901 1.48999 1.53748 2.21286 2.68521 2.83345 3.41764 3.78232 3.86953 3.89705 4.02879 4.21126 4.31514 4.36280 4.47276 4.57350 4.60977 4.68205 4.73479 4.83073 4.91610 4.95256 4.99237 5.03299 5.06044 5.07115 5.17397 5.17633 5.26672 5.39422 5.41072 5.49512 5.53657 5.72889 5.97083 6.11805 6.21664 6.27966 6.41661 6.52265 6.72118 6.95945 7.06103 8.34267 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037124 B = 0.003539 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.051580 B = 7908.920708 C = 8252.454102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.142 4.142 3 H 0.107 0.893 4 C -0.168 4.168 5 C -0.130 4.130 6 C -0.116 4.116 7 C 0.098 3.902 8 N -0.691 5.691 9 C 0.130 3.870 10 C -0.201 4.201 11 C -0.098 4.098 12 C -0.189 4.189 13 C 0.079 3.921 14 C -0.504 4.504 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.825 5.825 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.260 1.260 22 C -0.245 4.245 23 C -0.072 4.072 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.339 0.661 35 H 0.072 0.928 36 H 0.029 0.971 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.288 0.712 40 H 0.093 0.907 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 10.639 -8.078 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.161 4.161 3 H 0.125 0.875 4 C -0.205 4.205 5 C -0.131 4.131 6 C -0.173 4.173 7 C -0.031 4.031 8 N -0.324 5.324 9 C 0.002 3.998 10 C -0.202 4.202 11 C -0.117 4.117 12 C -0.209 4.209 13 C 0.077 3.923 14 C -0.534 4.534 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.451 5.451 18 Si 0.802 3.198 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.265 4.265 23 C -0.091 4.091 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.159 0.841 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.518 10.357 -8.505 15.367 hybrid contribution 0.103 -0.323 1.327 1.369 sum -7.416 10.034 -7.178 14.395 Atomic orbital electron populations 1.21335 0.91971 1.02285 1.02010 1.22538 0.95937 0.94159 1.03451 0.87492 1.23283 1.02463 1.01480 0.93254 1.21512 0.96889 1.00683 0.93997 1.21285 0.98335 0.97467 1.00239 1.21444 0.94024 0.90670 0.96965 1.60649 1.06052 1.30081 1.35587 1.20472 0.91444 0.92774 0.95094 1.19334 1.05839 1.00128 0.94909 1.20774 0.99288 0.96553 0.95099 1.21244 1.04394 0.95267 0.99990 1.17964 0.90743 0.92383 0.91223 1.19814 1.08402 1.09558 1.15576 0.90858 1.26749 0.94451 0.98601 0.98159 1.69876 1.08542 1.38755 1.27901 0.85264 0.78950 0.77985 0.77564 1.18547 1.19092 1.18424 1.21173 1.09085 1.00701 0.95533 1.20636 0.96696 0.93781 0.97984 0.92216 0.91153 0.92548 0.88749 0.88946 0.92009 0.92609 0.92062 0.90987 0.95075 0.84077 0.90942 0.95278 0.87880 0.88250 0.90184 0.88834 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.21 71.98 0.66 -1.12 16 2 C -0.14 -2.55 6.13 -10.80 -0.07 -2.61 16 3 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 4 C -0.17 -3.37 9.47 30.59 0.29 -3.08 16 5 C -0.13 -2.90 2.57 -52.18 -0.13 -3.04 16 6 C -0.12 -2.66 8.56 71.98 0.62 -2.05 16 7 C 0.10 2.44 5.87 86.30 0.51 2.95 16 8 N -0.69 -21.55 6.10 -517.92 -3.16 -24.71 16 9 C 0.13 4.37 5.80 85.56 0.50 4.87 16 10 C -0.20 -8.55 5.42 -19.67 -0.11 -8.66 16 11 C -0.10 -4.57 9.67 22.22 0.21 -4.36 16 12 C -0.19 -10.17 8.70 22.73 0.20 -9.98 16 13 C 0.08 4.41 5.58 -21.29 -0.12 4.29 16 14 C -0.50 -28.02 9.05 23.46 0.21 -27.81 16 15 H 0.07 3.94 7.91 -2.91 -0.02 3.91 16 16 C 0.04 1.81 5.14 85.26 0.44 2.25 16 17 N -0.82 -43.98 10.95 21.83 0.24 -43.74 16 18 Si 0.98 38.94 29.59 68.60 2.03 40.97 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 20 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 C -0.25 -12.51 9.80 22.73 0.22 -12.29 16 23 C -0.07 -3.26 9.67 22.22 0.21 -3.05 16 24 H 0.06 0.90 8.02 -2.39 -0.02 0.88 16 25 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.06 0.85 7.77 -2.39 -0.02 0.83 16 27 H 0.09 1.82 7.96 -2.39 -0.02 1.80 16 28 H 0.09 1.82 8.05 -2.39 -0.02 1.80 16 29 H 0.06 1.30 7.77 -2.38 -0.02 1.29 16 30 H 0.06 1.52 5.84 -2.39 -0.01 1.50 16 31 H 0.06 1.28 8.02 -2.39 -0.02 1.26 16 32 H 0.07 1.73 7.90 -2.39 -0.02 1.71 16 33 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.34 11.01 6.54 -89.70 -0.59 10.43 16 35 H 0.07 2.28 8.08 -2.38 -0.02 2.26 16 36 H 0.03 0.92 8.08 -2.39 -0.02 0.90 16 37 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.10 5.58 6.15 -2.91 -0.02 5.56 16 39 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 40 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -58.55 333.57 3.17 -55.38 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: 0.41 Total: 35.77 kcal Atomic # 6 Polarization: -67.32 SS G_CDS: 3.65 Total: -63.67 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -2.92 Total: -68.45 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -58.55 3.17 -55.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704278504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.498 kcal (2) G-P(sol) polarization free energy of solvation -58.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds