Wall clock time and date at job start Mon Mar 30 2020 07:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 115.55919 * 2 1 4 4 C 1.53078 * 117.50975 * 214.30270 * 2 1 3 5 5 C 1.52998 * 117.50078 * 145.69579 * 2 1 3 6 6 C 1.52994 * 117.50092 * 215.00164 * 5 2 1 7 7 C 1.53009 * 117.49811 * 359.97438 * 5 2 1 8 8 N 1.46895 * 109.47026 * 179.91332 * 7 5 2 9 9 C 1.46902 * 110.99680 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47024 * 180.02562 * 9 8 7 11 11 C 1.38634 * 119.75323 * 89.99584 * 10 9 8 12 12 C 1.37617 * 120.25274 * 179.97438 * 11 10 9 13 13 C 1.40709 * 119.74313 * 0.02562 * 12 11 10 14 14 C 1.41398 * 120.24400 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99762 * 335.28664 * 14 13 12 16 16 C 1.39945 * 120.00238 * 155.28880 * 14 13 12 17 17 N 1.30823 * 120.00149 * 342.23969 * 16 14 13 18 18 Si 1.86803 * 120.00096 * 162.23163 * 16 14 13 19 19 H 1.48504 * 109.46872 * 94.66632 * 18 16 14 20 20 H 1.48499 * 109.47350 * 214.66650 * 18 16 14 21 21 H 1.48495 * 109.47231 * 334.67070 * 18 16 14 22 22 C 1.40715 * 119.51378 * 359.97438 * 13 12 11 23 23 C 1.37621 * 119.74604 * 0.02562 * 22 13 12 24 24 H 1.09001 * 109.46481 * 274.30638 * 1 2 3 25 25 H 1.08996 * 109.47066 * 34.30548 * 1 2 3 26 26 H 1.09003 * 109.47110 * 154.30524 * 1 2 3 27 27 H 1.09005 * 117.48818 * 145.03571 * 4 2 1 28 28 H 1.08992 * 117.53647 * 359.97438 * 4 2 1 29 29 H 1.08999 * 109.47545 * 180.08168 * 6 5 2 30 30 H 1.09001 * 109.47197 * 300.08582 * 6 5 2 31 31 H 1.09000 * 109.47187 * 60.08255 * 6 5 2 32 32 H 1.09008 * 109.46759 * 59.91363 * 7 5 2 33 33 H 1.08996 * 109.46667 * 299.91835 * 7 5 2 34 34 H 1.00901 * 111.00220 * 303.95819 * 8 7 5 35 35 H 1.08998 * 109.47143 * 60.00626 * 9 8 7 36 36 H 1.08998 * 109.47029 * 299.99681 * 9 8 7 37 37 H 1.08004 * 119.87167 * 0.25860 * 11 10 9 38 38 H 1.08002 * 120.12760 * 180.02562 * 12 11 10 39 39 H 0.96995 * 120.00494 * 179.97438 * 17 16 14 40 40 H 1.07999 * 120.12709 * 179.97438 * 22 13 12 41 41 H 1.07993 * 119.87603 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7652 5 6 2.2365 -1.1210 0.7648 6 6 3.5488 -0.7760 1.4717 7 6 1.3589 -2.1560 1.4717 8 7 2.2125 -3.1448 2.1437 9 6 1.4022 -4.1571 2.8342 10 6 2.3103 -5.1515 3.5106 11 6 2.7261 -4.9277 4.8141 12 6 3.5549 -5.8293 5.4419 13 6 3.9808 -6.9814 4.7555 14 6 4.8319 -7.9149 5.3905 15 1 5.4698 -7.5988 6.2027 16 6 4.8479 -9.2486 4.9667 17 7 3.8620 -9.7178 4.2462 18 14 6.2773 -10.3586 5.4294 19 1 5.9368 -11.1170 6.6599 20 1 6.5452 -11.3091 4.3204 21 1 7.4862 -9.5323 5.6760 22 6 3.5525 -7.1982 3.4327 23 6 2.7237 -6.2831 2.8247 24 1 -0.3632 0.0772 1.0248 25 1 -0.3633 0.8489 -0.5792 26 1 -0.3633 -0.9261 -0.4456 27 1 3.1724 -0.8755 -1.2681 28 1 1.6127 -1.8597 -1.2682 29 1 3.9373 -1.6639 1.9704 30 1 4.2747 -0.4239 0.7388 31 1 3.3693 0.0059 2.2097 32 1 0.7281 -2.6590 0.7386 33 1 0.7310 -1.6567 2.2096 34 1 2.8496 -3.5758 1.4906 35 1 0.7722 -4.6738 2.1103 36 1 0.7744 -3.6720 3.5816 37 1 2.3945 -4.0448 5.3405 38 1 3.8772 -5.6532 6.4576 39 1 3.8732 -10.6420 3.9521 40 1 3.8737 -8.0789 2.8965 41 1 2.3941 -6.4472 1.8095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704278513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:01 Heat of formation + Delta-G solvation = 25.181261 kcal Electronic energy + Delta-G solvation = -18507.604613 eV Core-core repulsion = 15772.904978 eV Total energy + Delta-G solvation = -2734.699635 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.96549 -37.64410 -35.10403 -33.44002 -30.57248 -29.65530 -29.21000 -27.20950 -26.78932 -24.72034 -22.70337 -21.13738 -20.96214 -19.86466 -18.55183 -17.26449 -15.77270 -15.33517 -15.04394 -14.70146 -14.34989 -13.96358 -13.63644 -13.35990 -13.07905 -12.86216 -12.66075 -12.35731 -12.17019 -11.91001 -11.83563 -11.70751 -11.43526 -11.40097 -11.09497 -10.96621 -10.82164 -10.51368 -10.37824 -9.85952 -9.56350 -9.44098 -9.36114 -9.10053 -8.00442 -7.41709 -7.26443 -6.74582 -4.32572 2.76042 3.07578 3.10982 3.12494 3.20267 3.65219 3.94423 4.42569 4.61431 4.70132 4.76703 5.06465 5.17323 5.22980 5.53950 5.61824 5.69404 5.71657 5.74980 5.78489 5.86128 5.89511 5.94627 6.02268 6.12773 6.16230 6.26253 6.32933 6.41314 6.45333 6.57916 6.97342 7.09827 7.30570 7.40716 7.45791 7.64617 7.78657 7.92751 8.08332 8.17628 8.33450 8.66736 8.92276 9.00798 10.20127 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041502 B = 0.003435 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.511522 B = 8149.434977 C = 8183.821776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.152 4.152 3 H 0.101 0.899 4 C -0.177 4.177 5 C -0.115 4.115 6 C -0.112 4.112 7 C 0.096 3.904 8 N -0.679 5.679 9 C 0.124 3.876 10 C -0.213 4.213 11 C -0.069 4.069 12 C -0.228 4.228 13 C 0.112 3.888 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.166 4.166 23 C -0.095 4.095 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.341 0.659 35 H 0.018 0.982 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.280 0.720 40 H 0.116 0.884 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 12.120 -7.530 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.171 4.171 3 H 0.119 0.881 4 C -0.214 4.214 5 C -0.115 4.115 6 C -0.169 4.169 7 C -0.034 4.034 8 N -0.311 5.311 9 C -0.003 4.003 10 C -0.214 4.214 11 C -0.087 4.087 12 C -0.248 4.248 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.420 5.420 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.185 4.185 23 C -0.114 4.114 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.159 0.841 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.629 12.277 -7.069 14.624 hybrid contribution 0.206 -1.124 -0.647 1.314 sum -3.423 11.152 -7.716 13.987 Atomic orbital electron populations 1.21331 0.93142 1.01622 1.01780 1.22435 0.95084 0.94374 1.05205 0.88105 1.23318 1.02323 1.01428 0.94328 1.21639 0.98553 0.98858 0.92450 1.21270 0.93537 1.02700 0.99365 1.21395 0.93662 0.92447 0.95854 1.60653 1.19755 1.17511 1.33133 1.20545 0.93491 0.90591 0.95719 1.18889 1.08692 0.97746 0.96094 1.20330 0.97406 0.96949 0.94056 1.20976 1.05636 0.99290 0.98883 1.17619 0.89420 0.90931 0.91039 1.19596 1.20637 0.92876 1.16188 0.90503 1.25905 0.95840 0.98985 0.93405 1.69830 1.27948 1.16074 1.28122 0.86341 0.82133 0.79622 0.78875 1.19612 1.20079 1.18423 1.21260 1.02145 0.99720 0.95378 1.20519 0.98896 0.94732 0.97276 0.92174 0.92507 0.92644 0.89050 0.89184 0.89670 0.93615 0.92800 0.95818 0.91190 0.84131 0.96417 0.92120 0.89489 0.89135 0.90962 0.86629 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.22 37.16 0.34 -0.76 16 2 C -0.15 -1.54 6.13 -90.58 -0.56 -2.09 16 3 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.18 -1.86 9.47 -26.69 -0.25 -2.12 16 5 C -0.11 -1.35 2.50 -154.51 -0.39 -1.73 16 6 C -0.11 -1.35 9.73 37.15 0.36 -0.99 16 7 C 0.10 1.26 4.85 -3.82 -0.02 1.24 16 8 N -0.68 -10.72 5.01 -115.05 -0.58 -11.30 16 9 C 0.12 2.20 5.80 -4.97 -0.03 2.17 16 10 C -0.21 -4.61 5.42 -104.33 -0.56 -5.17 16 11 C -0.07 -1.56 9.67 -39.66 -0.38 -1.94 16 12 C -0.23 -5.68 9.80 -38.88 -0.38 -6.07 16 13 C 0.11 3.02 5.57 -106.83 -0.60 2.43 16 14 C -0.46 -12.41 9.05 -37.74 -0.34 -12.76 16 15 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 16 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.66 10.97 55.55 0.61 -20.05 16 18 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.17 -4.32 8.70 -38.87 -0.34 -4.65 16 23 C -0.10 -2.21 9.67 -39.66 -0.38 -2.60 16 24 H 0.06 0.54 8.02 -51.93 -0.42 0.13 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.51 7.77 -51.93 -0.40 0.10 16 27 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 28 H 0.09 0.94 7.96 -51.93 -0.41 0.53 16 29 H 0.08 1.20 6.70 -51.93 -0.35 0.85 16 30 H 0.04 0.50 7.90 -51.93 -0.41 0.09 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.02 0.31 7.77 -51.92 -0.40 -0.10 16 33 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 34 H 0.34 5.49 8.61 -39.29 -0.34 5.15 16 35 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 39 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 40 H 0.12 3.12 6.18 -52.49 -0.32 2.79 16 41 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -26.62 335.55 -10.37 -37.00 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.82 Total: 8.79 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: -3.61 Total: -33.20 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.03 Total: -31.35 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.62 -10.37 -37.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704278513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.178 kcal (2) G-P(sol) polarization free energy of solvation -26.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds