Wall clock time and date at job start Mon Mar 30 2020 07:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 115.55919 * 2 1 4 4 C 1.53078 * 117.50975 * 214.30270 * 2 1 3 5 5 C 1.52998 * 117.50078 * 145.69579 * 2 1 3 6 6 C 1.52994 * 117.50092 * 215.00164 * 5 2 1 7 7 C 1.53009 * 117.49811 * 359.97438 * 5 2 1 8 8 N 1.46895 * 109.47026 * 179.91332 * 7 5 2 9 9 C 1.46902 * 110.99680 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47024 * 180.02562 * 9 8 7 11 11 C 1.38634 * 119.75323 * 89.99584 * 10 9 8 12 12 C 1.37617 * 120.25274 * 179.97438 * 11 10 9 13 13 C 1.40709 * 119.74313 * 0.02562 * 12 11 10 14 14 C 1.41398 * 120.24400 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99762 * 335.28664 * 14 13 12 16 16 C 1.39945 * 120.00238 * 155.28880 * 14 13 12 17 17 N 1.30823 * 120.00149 * 342.23969 * 16 14 13 18 18 Si 1.86803 * 120.00096 * 162.23163 * 16 14 13 19 19 H 1.48504 * 109.46872 * 94.66632 * 18 16 14 20 20 H 1.48499 * 109.47350 * 214.66650 * 18 16 14 21 21 H 1.48495 * 109.47231 * 334.67070 * 18 16 14 22 22 C 1.40715 * 119.51378 * 359.97438 * 13 12 11 23 23 C 1.37621 * 119.74604 * 0.02562 * 22 13 12 24 24 H 1.09001 * 109.46481 * 274.30638 * 1 2 3 25 25 H 1.08996 * 109.47066 * 34.30548 * 1 2 3 26 26 H 1.09003 * 109.47110 * 154.30524 * 1 2 3 27 27 H 1.09005 * 117.48818 * 145.03571 * 4 2 1 28 28 H 1.08992 * 117.53647 * 359.97438 * 4 2 1 29 29 H 1.08999 * 109.47545 * 180.08168 * 6 5 2 30 30 H 1.09001 * 109.47197 * 300.08582 * 6 5 2 31 31 H 1.09000 * 109.47187 * 60.08255 * 6 5 2 32 32 H 1.09008 * 109.46759 * 59.91363 * 7 5 2 33 33 H 1.08996 * 109.46667 * 299.91835 * 7 5 2 34 34 H 1.00901 * 111.00220 * 303.95819 * 8 7 5 35 35 H 1.08998 * 109.47143 * 60.00626 * 9 8 7 36 36 H 1.08998 * 109.47029 * 299.99681 * 9 8 7 37 37 H 1.08004 * 119.87167 * 0.25860 * 11 10 9 38 38 H 1.08002 * 120.12760 * 180.02562 * 12 11 10 39 39 H 0.96995 * 120.00494 * 179.97438 * 17 16 14 40 40 H 1.07999 * 120.12709 * 179.97438 * 22 13 12 41 41 H 1.07993 * 119.87603 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7652 5 6 2.2365 -1.1210 0.7648 6 6 3.5488 -0.7760 1.4717 7 6 1.3589 -2.1560 1.4717 8 7 2.2125 -3.1448 2.1437 9 6 1.4022 -4.1571 2.8342 10 6 2.3103 -5.1515 3.5106 11 6 2.7261 -4.9277 4.8141 12 6 3.5549 -5.8293 5.4419 13 6 3.9808 -6.9814 4.7555 14 6 4.8319 -7.9149 5.3905 15 1 5.4698 -7.5988 6.2027 16 6 4.8479 -9.2486 4.9667 17 7 3.8620 -9.7178 4.2462 18 14 6.2773 -10.3586 5.4294 19 1 5.9368 -11.1170 6.6599 20 1 6.5452 -11.3091 4.3204 21 1 7.4862 -9.5323 5.6760 22 6 3.5525 -7.1982 3.4327 23 6 2.7237 -6.2831 2.8247 24 1 -0.3632 0.0772 1.0248 25 1 -0.3633 0.8489 -0.5792 26 1 -0.3633 -0.9261 -0.4456 27 1 3.1724 -0.8755 -1.2681 28 1 1.6127 -1.8597 -1.2682 29 1 3.9373 -1.6639 1.9704 30 1 4.2747 -0.4239 0.7388 31 1 3.3693 0.0059 2.2097 32 1 0.7281 -2.6590 0.7386 33 1 0.7310 -1.6567 2.2096 34 1 2.8496 -3.5758 1.4906 35 1 0.7722 -4.6738 2.1103 36 1 0.7744 -3.6720 3.5816 37 1 2.3945 -4.0448 5.3405 38 1 3.8772 -5.6532 6.4576 39 1 3.8732 -10.6420 3.9521 40 1 3.8737 -8.0789 2.8965 41 1 2.3941 -6.4472 1.8095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704278513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:00 Heat of formation + Delta-G solvation = 13.189608 kcal Electronic energy + Delta-G solvation = -18508.124610 eV Core-core repulsion = 15772.904978 eV Total energy + Delta-G solvation = -2735.219632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.96662 -39.37303 -36.56666 -35.17378 -32.13147 -31.13578 -30.69443 -28.61665 -27.77888 -26.21232 -24.21271 -22.86539 -21.94119 -21.62652 -19.53193 -19.19955 -17.27053 -16.72452 -16.25336 -16.03051 -15.67645 -15.53856 -15.12555 -14.85830 -14.24108 -14.06746 -13.79602 -13.72370 -13.65654 -13.36495 -13.03789 -12.90069 -12.77994 -12.74792 -12.62856 -12.34674 -12.24214 -12.06740 -11.82105 -11.37863 -11.24811 -10.98613 -10.69404 -10.32669 -9.39325 -9.25504 -9.11400 -8.62865 -6.31763 0.96044 1.17923 1.38003 1.48692 1.54527 2.21406 2.69357 2.82059 3.39604 3.78625 3.81553 3.93225 4.04777 4.25077 4.32303 4.35578 4.46644 4.57459 4.63656 4.71574 4.75482 4.84440 4.91152 4.95636 4.96473 5.06387 5.06596 5.13481 5.17868 5.22318 5.29322 5.39537 5.46095 5.49694 5.58242 5.73392 5.97363 6.12302 6.22114 6.27823 6.41978 6.54045 6.72501 6.96259 7.06351 8.34371 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041502 B = 0.003435 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.511522 B = 8149.434977 C = 8183.821776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.141 4.141 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.131 4.131 6 C -0.108 4.108 7 C 0.101 3.899 8 N -0.683 5.683 9 C 0.132 3.868 10 C -0.199 4.199 11 C -0.072 4.072 12 C -0.245 4.245 13 C 0.079 3.921 14 C -0.503 4.503 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.827 5.827 18 Si 0.981 3.019 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.260 1.260 22 C -0.189 4.189 23 C -0.098 4.098 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.338 0.662 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.287 0.713 40 H 0.098 0.902 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 13.369 -8.422 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 H 0.128 0.872 4 C -0.212 4.212 5 C -0.131 4.131 6 C -0.165 4.165 7 C -0.028 4.028 8 N -0.314 5.314 9 C 0.003 3.997 10 C -0.200 4.200 11 C -0.091 4.091 12 C -0.264 4.264 13 C 0.077 3.923 14 C -0.533 4.533 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.453 5.453 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.184 1.184 22 C -0.209 4.209 23 C -0.117 4.117 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.161 13.547 -7.965 16.256 hybrid contribution 0.264 -1.367 -0.426 1.456 sum -3.897 12.180 -8.391 15.295 Atomic orbital electron populations 1.21358 0.92308 1.02217 1.02045 1.22531 0.95731 0.94271 1.03400 0.87231 1.23370 1.02780 1.01689 0.93333 1.21572 0.98560 0.99836 0.93135 1.21202 0.94076 1.01667 0.99574 1.21385 0.93529 0.91988 0.95896 1.60571 1.19972 1.17116 1.33750 1.20442 0.92777 0.90279 0.96163 1.19320 1.07381 0.97649 0.95678 1.20635 0.96608 0.97217 0.94631 1.21177 1.06435 0.99513 0.99299 1.17959 0.90479 0.92050 0.91794 1.19832 1.21934 0.94206 1.17337 0.90903 1.26747 0.98225 0.99921 0.93046 1.69878 1.29512 1.16890 1.29018 0.85217 0.78227 0.77442 0.78960 1.18703 1.18970 1.18350 1.21233 1.03909 1.00231 0.95497 1.20767 0.98078 0.94592 0.98249 0.92202 0.91061 0.92829 0.88428 0.89070 0.91878 0.92591 0.92749 0.95291 0.91077 0.84403 0.95549 0.91061 0.87008 0.88823 0.90209 0.88381 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 9.22 71.98 0.66 -1.20 16 2 C -0.14 -2.46 6.13 -10.77 -0.07 -2.52 16 3 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.17 -3.26 9.47 30.62 0.29 -2.97 16 5 C -0.13 -2.79 2.50 -52.18 -0.13 -2.92 16 6 C -0.11 -2.45 9.73 71.98 0.70 -1.75 16 7 C 0.10 2.43 4.85 86.31 0.42 2.84 16 8 N -0.68 -20.28 5.01 -517.92 -2.60 -22.88 16 9 C 0.13 4.36 5.80 85.56 0.50 4.86 16 10 C -0.20 -8.40 5.42 -19.67 -0.11 -8.50 16 11 C -0.07 -3.23 9.67 22.22 0.21 -3.02 16 12 C -0.24 -12.41 9.80 22.73 0.22 -12.19 16 13 C 0.08 4.42 5.57 -21.29 -0.12 4.30 16 14 C -0.50 -27.99 9.05 23.46 0.21 -27.78 16 15 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 16 C 0.04 1.81 5.14 85.26 0.44 2.25 16 17 N -0.83 -44.13 10.97 21.83 0.24 -43.89 16 18 Si 0.98 38.97 29.60 68.60 2.03 41.00 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 22 C -0.19 -10.15 8.70 22.73 0.20 -9.95 16 23 C -0.10 -4.54 9.67 22.22 0.21 -4.33 16 24 H 0.06 0.93 8.02 -2.39 -0.02 0.91 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.84 7.77 -2.39 -0.02 0.82 16 27 H 0.10 1.69 8.05 -2.38 -0.02 1.68 16 28 H 0.09 1.68 7.96 -2.39 -0.02 1.66 16 29 H 0.06 1.71 6.70 -2.39 -0.02 1.70 16 30 H 0.06 1.12 7.90 -2.39 -0.02 1.10 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.03 0.68 7.77 -2.38 -0.02 0.66 16 33 H 0.07 1.70 8.02 -2.39 -0.02 1.68 16 34 H 0.34 10.41 8.61 -89.69 -0.77 9.63 16 35 H 0.03 0.84 8.08 -2.39 -0.02 0.82 16 36 H 0.07 2.24 8.08 -2.39 -0.02 2.22 16 37 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 38 H 0.09 4.54 8.06 -2.91 -0.02 4.51 16 39 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 40 H 0.10 5.52 6.18 -2.91 -0.02 5.50 16 41 H 0.10 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -58.02 335.55 3.54 -54.47 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.22 Total: 34.17 kcal Atomic # 6 Polarization: -66.52 SS G_CDS: 3.65 Total: -62.87 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -2.36 Total: -66.77 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -58.02 3.54 -54.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704278513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.662 kcal (2) G-P(sol) polarization free energy of solvation -58.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds