Wall clock time and date at job start Mon Mar 30 2020 07:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 115.55241 * 2 1 4 4 C 1.52997 * 117.49962 * 145.67315 * 2 1 3 5 5 C 1.53010 * 117.49781 * 214.33221 * 2 1 3 6 6 C 1.52998 * 117.49812 * 145.01935 * 5 2 1 7 7 C 1.53001 * 117.49741 * 359.97438 * 5 2 1 8 8 N 1.46899 * 109.47028 * 180.02562 * 7 5 2 9 9 C 1.46895 * 111.00151 * 180.02562 * 8 7 5 10 10 C 1.50702 * 109.47388 * 180.02562 * 9 8 7 11 11 C 1.38639 * 119.74488 * 269.72202 * 10 9 8 12 12 C 1.37621 * 120.24326 * 179.75931 * 11 10 9 13 13 C 1.40710 * 119.74648 * 0.48985 * 12 11 10 14 14 C 1.41392 * 120.24587 * 179.78450 * 13 12 11 15 15 H 1.07999 * 119.99776 * 24.37768 * 14 13 12 16 16 C 1.39948 * 120.00271 * 204.37799 * 14 13 12 17 17 N 1.30820 * 119.99960 * 17.85910 * 16 14 13 18 18 Si 1.86805 * 120.00015 * 197.86387 * 16 14 13 19 19 H 1.48495 * 109.47147 * 59.99552 * 18 16 14 20 20 H 1.48490 * 109.47010 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46680 * 300.00026 * 18 16 14 22 22 C 1.40722 * 119.51244 * 359.76710 * 13 12 11 23 23 C 1.37618 * 119.74392 * 359.97438 * 22 13 12 24 24 H 1.09000 * 109.46721 * 325.58117 * 1 2 3 25 25 H 1.08997 * 109.46842 * 205.58308 * 1 2 3 26 26 H 1.09005 * 109.46949 * 85.58297 * 1 2 3 27 27 H 1.09005 * 117.50184 * 214.97920 * 4 2 1 28 28 H 1.09007 * 117.50201 * 359.97438 * 4 2 1 29 29 H 1.09004 * 109.47037 * 60.00392 * 6 5 2 30 30 H 1.09000 * 109.47083 * 179.97438 * 6 5 2 31 31 H 1.08993 * 109.47146 * 300.00339 * 6 5 2 32 32 H 1.08993 * 109.47299 * 300.00230 * 7 5 2 33 33 H 1.09005 * 109.46964 * 60.00282 * 7 5 2 34 34 H 1.00899 * 110.99746 * 56.04783 * 8 7 5 35 35 H 1.09008 * 109.46613 * 299.99849 * 9 8 7 36 36 H 1.09000 * 109.47151 * 59.99505 * 9 8 7 37 37 H 1.07999 * 119.87311 * 0.02562 * 11 10 9 38 38 H 1.07998 * 120.12265 * 180.27578 * 12 11 10 39 39 H 0.96998 * 119.99926 * 179.97438 * 17 16 14 40 40 H 1.07995 * 120.12556 * 179.97438 * 22 13 12 41 41 H 1.07999 * 119.87670 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2364 -1.1207 0.7653 5 6 2.2364 -1.1208 -0.7655 6 6 3.5489 -0.7755 -1.4718 7 6 1.3588 -2.1560 -1.4718 8 7 2.2123 -3.1436 -2.1456 9 6 1.4021 -4.1554 -2.8367 10 6 2.3102 -5.1493 -3.5141 11 6 2.7208 -4.9274 -4.8195 12 6 3.5540 -5.8257 -5.4463 13 6 3.9806 -6.9779 -4.7606 14 6 4.8329 -7.9102 -5.3959 15 1 5.4669 -7.5940 -6.2111 16 6 4.8551 -9.2426 -4.9685 17 7 3.8723 -9.7139 -4.2451 18 14 6.2882 -10.3481 -5.4308 19 1 7.5481 -9.7770 -4.8909 20 1 6.0737 -11.7016 -4.8590 21 1 6.3821 -10.4441 -6.9098 22 6 3.5531 -7.1955 -3.4376 23 6 2.7243 -6.2810 -2.8288 24 1 -0.3633 0.8478 0.5809 25 1 -0.3633 -0.9269 0.4438 26 1 -0.3633 0.0792 -1.0247 27 1 3.1716 -0.8748 1.2685 28 1 1.6112 -1.8579 1.2692 29 1 4.2752 -0.4256 -0.7382 30 1 3.9369 -1.6629 -1.9718 31 1 3.3701 0.0079 -2.2082 32 1 0.7298 -2.6603 -0.7382 33 1 0.7291 -1.6567 -2.2083 34 1 2.8506 -3.5745 -1.4937 35 1 0.7728 -4.6733 -2.1128 36 1 0.7734 -3.6697 -3.5829 37 1 2.3891 -4.0441 -5.3450 38 1 3.8762 -5.6486 -6.4617 39 1 3.8875 -10.6375 -3.9491 40 1 3.8742 -8.0767 -2.9022 41 1 2.3952 -6.4456 -1.8134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704278518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:07 Heat of formation + Delta-G solvation = 25.166046 kcal Electronic energy + Delta-G solvation = -18507.592127 eV Core-core repulsion = 15772.891832 eV Total energy + Delta-G solvation = -2734.700295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.96414 -37.64290 -35.10422 -33.44221 -30.57282 -29.65498 -29.20797 -27.20895 -26.78934 -24.72116 -22.70208 -21.13506 -20.96145 -19.86298 -18.55182 -17.26324 -15.77265 -15.33716 -15.04696 -14.70044 -14.34923 -13.96190 -13.63730 -13.35969 -13.07890 -12.86179 -12.65871 -12.35258 -12.16993 -11.90993 -11.83373 -11.70752 -11.43251 -11.38936 -11.09563 -10.99325 -10.81791 -10.50310 -10.38686 -9.86223 -9.56534 -9.44019 -9.35404 -9.10127 -8.00264 -7.41672 -7.26672 -6.74563 -4.32672 2.77294 3.06941 3.09671 3.12004 3.21175 3.65254 3.94175 4.42567 4.61479 4.69993 4.76832 5.06454 5.17366 5.23057 5.54051 5.61844 5.69462 5.71700 5.75028 5.78553 5.86189 5.89572 5.94734 6.02352 6.12803 6.16262 6.26309 6.32983 6.41402 6.45422 6.57966 6.97449 7.09751 7.30788 7.40967 7.45960 7.64539 7.78884 7.92902 8.08164 8.17830 8.33448 8.66643 8.92167 9.00880 10.20026 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041408 B = 0.003436 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.033272 B = 8146.086583 C = 8182.223843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.152 4.152 3 H 0.101 0.899 4 C -0.177 4.177 5 C -0.115 4.115 6 C -0.112 4.112 7 C 0.096 3.904 8 N -0.680 5.680 9 C 0.124 3.876 10 C -0.213 4.213 11 C -0.069 4.069 12 C -0.229 4.229 13 C 0.113 3.887 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.166 4.166 23 C -0.095 4.095 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.341 0.659 35 H 0.017 0.983 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.280 0.720 40 H 0.116 0.884 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 12.094 7.532 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.171 4.171 3 H 0.119 0.881 4 C -0.214 4.214 5 C -0.115 4.115 6 C -0.169 4.169 7 C -0.033 4.033 8 N -0.311 5.311 9 C -0.003 4.003 10 C -0.215 4.215 11 C -0.087 4.087 12 C -0.248 4.248 13 C 0.110 3.890 14 C -0.494 4.494 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.420 5.420 18 Si 0.732 3.268 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.186 4.186 23 C -0.114 4.114 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.159 0.841 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.638 12.247 7.072 14.603 hybrid contribution 0.219 -1.110 0.643 1.301 sum -3.419 11.137 7.714 13.973 Atomic orbital electron populations 1.21331 0.93146 1.01622 1.01781 1.22423 0.95090 0.94390 1.05185 0.88112 1.23320 1.02322 1.01448 0.94315 1.21652 0.98556 0.98868 0.92429 1.21269 0.93526 1.02697 0.99374 1.21391 0.93667 0.92450 0.95838 1.60637 1.19701 1.17600 1.33136 1.20544 0.93485 0.90590 0.95710 1.18887 1.08770 0.97777 0.96019 1.20331 0.97397 0.96967 0.94042 1.20970 1.05556 0.99366 0.98925 1.17614 0.89443 0.90896 0.91037 1.19571 1.20771 0.92997 1.16013 0.90525 1.25907 0.95860 0.98940 0.93420 1.69822 1.28032 1.16139 1.27963 0.86386 0.82102 0.78535 0.79800 1.18828 1.20385 1.19018 1.21271 1.02152 0.99762 0.95374 1.20518 0.98893 0.94718 0.97283 0.92507 0.92644 0.92172 0.89054 0.89185 0.93616 0.89669 0.92796 0.95819 0.91190 0.84121 0.96435 0.92119 0.89487 0.89141 0.90885 0.86585 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.21 37.16 0.34 -0.76 16 2 C -0.15 -1.54 6.12 -90.62 -0.56 -2.09 16 3 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.18 -1.87 9.47 -26.69 -0.25 -2.12 16 5 C -0.11 -1.35 2.51 -154.46 -0.39 -1.73 16 6 C -0.11 -1.35 9.74 37.16 0.36 -0.99 16 7 C 0.10 1.26 4.85 -3.82 -0.02 1.24 16 8 N -0.68 -10.73 5.01 -115.06 -0.58 -11.31 16 9 C 0.12 2.20 5.80 -4.98 -0.03 2.17 16 10 C -0.21 -4.62 5.42 -104.33 -0.56 -5.18 16 11 C -0.07 -1.56 9.67 -39.66 -0.38 -1.94 16 12 C -0.23 -5.69 9.80 -38.87 -0.38 -6.08 16 13 C 0.11 3.03 5.57 -106.83 -0.60 2.43 16 14 C -0.46 -12.43 9.05 -37.74 -0.34 -12.77 16 15 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 16 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.66 10.95 55.55 0.61 -20.05 16 18 Si 0.91 18.76 29.60 -169.99 -5.03 13.73 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 23 C -0.10 -2.21 9.67 -39.66 -0.38 -2.59 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.51 7.77 -51.93 -0.40 0.10 16 26 H 0.06 0.54 8.02 -51.93 -0.42 0.13 16 27 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 28 H 0.09 0.94 7.96 -51.92 -0.41 0.53 16 29 H 0.04 0.50 7.90 -51.93 -0.41 0.09 16 30 H 0.08 1.20 6.70 -51.93 -0.35 0.85 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.02 0.31 7.77 -51.93 -0.40 -0.10 16 33 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 34 H 0.34 5.50 8.61 -39.29 -0.34 5.16 16 35 H 0.02 0.30 8.08 -51.92 -0.42 -0.12 16 36 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 39 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 40 H 0.12 3.13 6.15 -52.49 -0.32 2.81 16 41 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -26.59 335.51 -10.37 -36.97 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.82 Total: 8.85 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: -3.62 Total: -33.24 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.03 Total: -31.36 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.59 -10.37 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704278518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.133 kcal (2) G-P(sol) polarization free energy of solvation -26.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds