Wall clock time and date at job start Mon Mar 30 2020 07:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 115.55241 * 2 1 4 4 C 1.52997 * 117.49962 * 145.67315 * 2 1 3 5 5 C 1.53010 * 117.49781 * 214.33221 * 2 1 3 6 6 C 1.52998 * 117.49812 * 145.01935 * 5 2 1 7 7 C 1.53001 * 117.49741 * 359.97438 * 5 2 1 8 8 N 1.46899 * 109.47028 * 180.02562 * 7 5 2 9 9 C 1.46895 * 111.00151 * 180.02562 * 8 7 5 10 10 C 1.50702 * 109.47388 * 180.02562 * 9 8 7 11 11 C 1.38639 * 119.74488 * 269.72202 * 10 9 8 12 12 C 1.37621 * 120.24326 * 179.75931 * 11 10 9 13 13 C 1.40710 * 119.74648 * 0.48985 * 12 11 10 14 14 C 1.41392 * 120.24587 * 179.78450 * 13 12 11 15 15 H 1.07999 * 119.99776 * 24.37768 * 14 13 12 16 16 C 1.39948 * 120.00271 * 204.37799 * 14 13 12 17 17 N 1.30820 * 119.99960 * 17.85910 * 16 14 13 18 18 Si 1.86805 * 120.00015 * 197.86387 * 16 14 13 19 19 H 1.48495 * 109.47147 * 59.99552 * 18 16 14 20 20 H 1.48490 * 109.47010 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46680 * 300.00026 * 18 16 14 22 22 C 1.40722 * 119.51244 * 359.76710 * 13 12 11 23 23 C 1.37618 * 119.74392 * 359.97438 * 22 13 12 24 24 H 1.09000 * 109.46721 * 325.58117 * 1 2 3 25 25 H 1.08997 * 109.46842 * 205.58308 * 1 2 3 26 26 H 1.09005 * 109.46949 * 85.58297 * 1 2 3 27 27 H 1.09005 * 117.50184 * 214.97920 * 4 2 1 28 28 H 1.09007 * 117.50201 * 359.97438 * 4 2 1 29 29 H 1.09004 * 109.47037 * 60.00392 * 6 5 2 30 30 H 1.09000 * 109.47083 * 179.97438 * 6 5 2 31 31 H 1.08993 * 109.47146 * 300.00339 * 6 5 2 32 32 H 1.08993 * 109.47299 * 300.00230 * 7 5 2 33 33 H 1.09005 * 109.46964 * 60.00282 * 7 5 2 34 34 H 1.00899 * 110.99746 * 56.04783 * 8 7 5 35 35 H 1.09008 * 109.46613 * 299.99849 * 9 8 7 36 36 H 1.09000 * 109.47151 * 59.99505 * 9 8 7 37 37 H 1.07999 * 119.87311 * 0.02562 * 11 10 9 38 38 H 1.07998 * 120.12265 * 180.27578 * 12 11 10 39 39 H 0.96998 * 119.99926 * 179.97438 * 17 16 14 40 40 H 1.07995 * 120.12556 * 179.97438 * 22 13 12 41 41 H 1.07999 * 119.87670 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2364 -1.1207 0.7653 5 6 2.2364 -1.1208 -0.7655 6 6 3.5489 -0.7755 -1.4718 7 6 1.3588 -2.1560 -1.4718 8 7 2.2123 -3.1436 -2.1456 9 6 1.4021 -4.1554 -2.8367 10 6 2.3102 -5.1493 -3.5141 11 6 2.7208 -4.9274 -4.8195 12 6 3.5540 -5.8257 -5.4463 13 6 3.9806 -6.9779 -4.7606 14 6 4.8329 -7.9102 -5.3959 15 1 5.4669 -7.5940 -6.2111 16 6 4.8551 -9.2426 -4.9685 17 7 3.8723 -9.7139 -4.2451 18 14 6.2882 -10.3481 -5.4308 19 1 7.5481 -9.7770 -4.8909 20 1 6.0737 -11.7016 -4.8590 21 1 6.3821 -10.4441 -6.9098 22 6 3.5531 -7.1955 -3.4376 23 6 2.7243 -6.2810 -2.8288 24 1 -0.3633 0.8478 0.5809 25 1 -0.3633 -0.9269 0.4438 26 1 -0.3633 0.0792 -1.0247 27 1 3.1716 -0.8748 1.2685 28 1 1.6112 -1.8579 1.2692 29 1 4.2752 -0.4256 -0.7382 30 1 3.9369 -1.6629 -1.9718 31 1 3.3701 0.0079 -2.2082 32 1 0.7298 -2.6603 -0.7382 33 1 0.7291 -1.6567 -2.2083 34 1 2.8506 -3.5745 -1.4937 35 1 0.7728 -4.6733 -2.1128 36 1 0.7734 -3.6697 -3.5829 37 1 2.3891 -4.0441 -5.3450 38 1 3.8762 -5.6486 -6.4617 39 1 3.8875 -10.6375 -3.9491 40 1 3.8742 -8.0767 -2.9022 41 1 2.3952 -6.4456 -1.8134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704278518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:06 Heat of formation + Delta-G solvation = 13.203363 kcal Electronic energy + Delta-G solvation = -18508.110868 eV Core-core repulsion = 15772.891832 eV Total energy + Delta-G solvation = -2735.219036 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.96570 -39.37257 -36.56772 -35.17575 -32.13246 -31.13458 -30.69463 -28.61710 -27.77837 -26.21349 -24.21220 -22.86534 -21.93947 -21.62531 -19.53255 -19.19819 -17.27346 -16.72577 -16.25334 -16.02832 -15.67797 -15.53940 -15.12714 -14.85757 -14.23351 -14.06791 -13.79669 -13.72478 -13.65547 -13.36248 -13.03854 -12.90424 -12.77811 -12.74450 -12.64199 -12.33492 -12.24117 -12.07007 -11.82364 -11.38340 -11.24260 -10.98727 -10.69630 -10.32410 -9.39483 -9.25559 -9.11463 -8.62846 -6.31867 0.96598 1.18015 1.37830 1.48942 1.53885 2.21212 2.69340 2.82020 3.39551 3.78649 3.81514 3.93333 4.04697 4.25093 4.32393 4.35545 4.46656 4.57457 4.63698 4.71567 4.75459 4.84424 4.91137 4.95654 4.96443 5.06430 5.06564 5.13477 5.17610 5.22272 5.29282 5.39731 5.46090 5.49789 5.58234 5.73265 5.97448 6.12174 6.22298 6.27859 6.41921 6.54105 6.72404 6.96124 7.06406 8.34086 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041408 B = 0.003436 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.033272 B = 8146.086583 C = 8182.223843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.141 4.141 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.131 4.131 6 C -0.108 4.108 7 C 0.101 3.899 8 N -0.684 5.684 9 C 0.132 3.868 10 C -0.199 4.199 11 C -0.072 4.072 12 C -0.245 4.245 13 C 0.080 3.920 14 C -0.504 4.504 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.826 5.826 18 Si 0.981 3.019 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.260 1.260 22 C -0.190 4.190 23 C -0.098 4.098 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.338 0.662 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.288 0.712 40 H 0.099 0.901 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.119 13.351 8.410 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 H 0.128 0.872 4 C -0.212 4.212 5 C -0.131 4.131 6 C -0.165 4.165 7 C -0.028 4.028 8 N -0.314 5.314 9 C 0.004 3.996 10 C -0.201 4.201 11 C -0.091 4.091 12 C -0.264 4.264 13 C 0.077 3.923 14 C -0.534 4.534 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.453 5.453 18 Si 0.802 3.198 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.209 4.209 23 C -0.117 4.117 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.160 13.526 7.954 16.233 hybrid contribution 0.275 -1.354 0.427 1.446 sum -3.885 12.172 8.380 15.280 Atomic orbital electron populations 1.21358 0.92311 1.02215 1.02049 1.22518 0.95737 0.94287 1.03378 0.87237 1.23372 1.02779 1.01709 0.93321 1.21584 0.98564 0.99848 0.93117 1.21201 0.94064 1.01664 0.99582 1.21381 0.93534 0.91993 0.95876 1.60555 1.19917 1.17202 1.33755 1.20441 0.92772 0.90281 0.96150 1.19316 1.07456 0.97674 0.95612 1.20638 0.96601 0.97237 0.94618 1.21171 1.06358 0.99581 0.99340 1.17956 0.90500 0.92019 0.91791 1.19816 1.22082 0.94323 1.17164 0.90866 1.26750 0.98258 0.99864 0.93055 1.69874 1.29606 1.16908 1.28869 0.85268 0.78171 0.76686 0.79669 1.18556 1.19107 1.18374 1.21246 1.03921 1.00278 0.95502 1.20765 0.98076 0.94581 0.98255 0.91060 0.92832 0.92199 0.88431 0.89069 0.92593 0.91879 0.92740 0.95297 0.91074 0.84397 0.95573 0.91054 0.87003 0.88825 0.90188 0.88329 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 9.21 71.98 0.66 -1.20 16 2 C -0.14 -2.45 6.12 -10.79 -0.07 -2.52 16 3 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.17 -3.26 9.47 30.62 0.29 -2.97 16 5 C -0.13 -2.79 2.51 -52.15 -0.13 -2.92 16 6 C -0.11 -2.45 9.74 71.98 0.70 -1.75 16 7 C 0.10 2.43 4.85 86.30 0.42 2.85 16 8 N -0.68 -20.30 5.01 -517.93 -2.60 -22.90 16 9 C 0.13 4.37 5.80 85.56 0.50 4.86 16 10 C -0.20 -8.42 5.42 -19.67 -0.11 -8.52 16 11 C -0.07 -3.23 9.67 22.22 0.21 -3.02 16 12 C -0.24 -12.43 9.80 22.73 0.22 -12.20 16 13 C 0.08 4.43 5.57 -21.29 -0.12 4.31 16 14 C -0.50 -28.03 9.05 23.46 0.21 -27.81 16 15 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 16 C 0.04 1.82 5.14 85.26 0.44 2.26 16 17 N -0.83 -44.13 10.95 21.83 0.24 -43.89 16 18 Si 0.98 38.96 29.60 68.60 2.03 40.99 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 C -0.19 -10.20 8.70 22.73 0.20 -10.00 16 23 C -0.10 -4.54 9.67 22.22 0.21 -4.33 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.84 7.77 -2.39 -0.02 0.82 16 26 H 0.06 0.93 8.02 -2.38 -0.02 0.91 16 27 H 0.10 1.70 8.05 -2.38 -0.02 1.68 16 28 H 0.09 1.68 7.96 -2.38 -0.02 1.67 16 29 H 0.06 1.12 7.90 -2.39 -0.02 1.11 16 30 H 0.06 1.71 6.70 -2.39 -0.02 1.70 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.03 0.68 7.77 -2.39 -0.02 0.66 16 33 H 0.07 1.70 8.02 -2.38 -0.02 1.68 16 34 H 0.34 10.42 8.61 -89.70 -0.77 9.65 16 35 H 0.03 0.83 8.08 -2.38 -0.02 0.81 16 36 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 37 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 38 H 0.09 4.54 8.06 -2.91 -0.02 4.51 16 39 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 40 H 0.10 5.55 6.15 -2.91 -0.02 5.53 16 41 H 0.10 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -57.96 335.51 3.54 -54.41 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.22 Total: 34.36 kcal Atomic # 6 Polarization: -66.62 SS G_CDS: 3.65 Total: -62.97 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -2.36 Total: -66.79 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -57.96 3.54 -54.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704278518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.618 kcal (2) G-P(sol) polarization free energy of solvation -57.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds