Wall clock time and date at job start Mon Mar 30 2020 07:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 115.55009 * 2 1 4 4 C 1.52998 * 117.50266 * 214.28773 * 2 1 3 5 5 C 1.52998 * 60.00319 * 252.50874 * 4 2 1 6 6 C 1.52995 * 117.51857 * 252.52095 * 5 4 2 7 7 C 1.53002 * 117.49997 * 107.48284 * 5 4 2 8 8 N 1.46902 * 109.46802 * 111.37970 * 7 5 4 9 9 C 1.46894 * 111.00241 * 180.02562 * 8 7 5 10 10 H 1.09007 * 109.46928 * 34.99733 * 9 8 7 11 11 C 1.50697 * 109.47266 * 275.00315 * 9 8 7 12 12 H 1.08001 * 119.99898 * 303.88759 * 11 9 8 13 13 C 1.37874 * 120.00547 * 123.88503 * 11 9 8 14 14 N 1.31514 * 120.00607 * 172.88539 * 13 11 9 15 15 Si 1.86808 * 119.99666 * 352.89020 * 13 11 9 16 16 H 1.48499 * 109.46904 * 85.59422 * 15 13 11 17 17 H 1.48494 * 109.46887 * 205.59184 * 15 13 11 18 18 H 1.48494 * 109.46851 * 325.59163 * 15 13 11 19 19 C 1.50705 * 109.47375 * 154.99818 * 9 8 7 20 20 C 1.38229 * 119.99925 * 225.96508 * 19 9 8 21 21 C 1.38233 * 119.99948 * 179.97438 * 20 19 9 22 22 C 1.38239 * 119.99933 * 0.02562 * 21 20 19 23 23 C 1.38238 * 119.99954 * 359.97438 * 22 21 20 24 24 C 1.38227 * 119.99619 * 45.99395 * 19 9 8 25 25 H 1.09007 * 109.46864 * 274.33212 * 1 2 3 26 26 H 1.08995 * 109.47201 * 34.33333 * 1 2 3 27 27 H 1.09002 * 109.46685 * 154.33784 * 1 2 3 28 28 H 1.08997 * 117.49782 * 145.01486 * 4 2 1 29 29 H 1.09006 * 117.49512 * 0.02562 * 4 2 1 30 30 H 1.09011 * 109.46818 * 248.71615 * 6 5 4 31 31 H 1.08999 * 109.47352 * 8.71095 * 6 5 4 32 32 H 1.08989 * 109.47779 * 128.71363 * 6 5 4 33 33 H 1.09006 * 109.47017 * 351.38486 * 7 5 4 34 34 H 1.08995 * 109.47224 * 231.37750 * 7 5 4 35 35 H 1.00901 * 110.99973 * 303.95638 * 8 7 5 36 36 H 0.96989 * 120.00342 * 179.97438 * 14 13 11 37 37 H 1.08003 * 120.00468 * 0.02562 * 20 19 9 38 38 H 1.08003 * 120.00242 * 180.02562 * 21 20 19 39 39 H 1.07995 * 119.99864 * 179.70049 * 22 21 20 40 40 H 1.07995 * 119.99751 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00396 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1212 -0.7645 5 6 2.2365 -1.1207 0.7655 6 6 3.5487 -0.7751 1.4722 7 6 1.3589 -2.1556 1.4724 8 7 2.2125 -3.1428 2.1466 9 6 1.4024 -4.1550 2.8373 10 1 0.4999 -4.3543 2.2593 11 6 1.0215 -3.6467 4.2039 12 1 1.7887 -3.3353 4.8973 13 6 -0.3063 -3.5792 4.5690 14 7 -0.6337 -3.2702 5.8047 15 14 -1.6404 -3.9269 3.3084 16 1 -1.8924 -5.3890 3.2449 17 1 -2.8887 -3.2261 3.7029 18 1 -1.2004 -3.4420 1.9756 19 6 2.1997 -5.4261 2.9782 20 6 1.6198 -6.6431 2.6729 21 6 2.3512 -7.8090 2.8017 22 6 3.6625 -7.7578 3.2363 23 6 4.2425 -6.5406 3.5416 24 6 3.5107 -5.3748 3.4133 25 1 -0.3633 0.0776 1.0248 26 1 -0.3633 0.8486 -0.5796 27 1 -0.3633 -0.9263 -0.4451 28 1 3.1715 -0.8755 -1.2679 29 1 1.6112 -1.8587 -1.2679 30 1 3.9374 -1.6629 1.9713 31 1 4.2746 -0.4234 0.7391 32 1 3.3692 0.0070 2.2098 33 1 0.7296 -2.6600 0.7390 34 1 0.7296 -1.6560 2.2089 35 1 2.8508 -3.5740 1.4949 36 1 -1.5678 -3.2224 6.0614 37 1 0.5954 -6.6832 2.3330 38 1 1.8983 -8.7599 2.5628 39 1 4.2325 -8.6690 3.3415 40 1 5.2668 -6.5007 3.8815 41 1 3.9638 -4.4239 3.6519 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704290464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:44 Heat of formation + Delta-G solvation = 42.162609 kcal Electronic energy + Delta-G solvation = -19540.970082 eV Core-core repulsion = 16807.006814 eV Total energy + Delta-G solvation = -2733.963269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.88201 -38.32114 -35.15353 -32.26227 -30.80145 -30.21342 -29.39788 -27.07248 -26.59753 -24.74584 -22.37411 -21.77617 -20.86084 -19.76190 -18.24916 -16.98346 -16.23107 -15.21596 -14.85824 -14.62921 -14.32963 -13.88541 -13.80388 -13.40393 -12.86782 -12.71963 -12.61519 -12.48785 -12.25888 -12.17085 -11.82082 -11.73433 -11.45669 -11.19638 -11.05703 -10.93390 -10.47862 -10.38492 -10.18309 -9.80080 -9.60358 -9.46106 -9.10895 -8.64190 -8.25992 -7.92902 -7.31263 -6.14977 -4.11425 2.05723 2.10171 3.19794 3.26557 3.29251 3.98059 4.32029 4.47019 4.85918 4.95143 5.09938 5.17663 5.42470 5.49811 5.50972 5.53868 5.58236 5.70978 5.91139 5.94298 5.97351 5.99273 6.09365 6.18192 6.23065 6.24060 6.25585 6.37483 6.44820 6.48680 6.58292 6.68173 6.76857 6.78647 6.87590 7.10377 7.15791 7.42674 7.51585 7.72975 7.98330 8.30824 8.64559 8.98693 9.47632 10.97865 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.008094 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.293604 B = 3458.408013 C = 4591.685906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.152 4.152 3 H 0.099 0.901 4 C -0.181 4.181 5 C -0.110 4.110 6 C -0.107 4.107 7 C 0.107 3.893 8 N -0.671 5.671 9 C 0.213 3.787 10 H 0.017 0.983 11 C -0.477 4.477 12 H 0.081 0.919 13 C 0.074 3.926 14 N -0.890 5.890 15 Si 0.865 3.135 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.042 4.042 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.147 4.147 23 C -0.127 4.127 24 C -0.100 4.100 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.014 0.986 34 H 0.081 0.919 35 H 0.313 0.687 36 H 0.265 0.735 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.640 -0.125 -10.787 12.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.171 4.171 3 H 0.117 0.883 4 C -0.218 4.218 5 C -0.110 4.110 6 C -0.164 4.164 7 C -0.023 4.023 8 N -0.301 5.301 9 C 0.106 3.894 10 H 0.035 0.965 11 C -0.516 4.516 12 H 0.100 0.900 13 C -0.129 4.129 14 N -0.528 5.528 15 Si 0.693 3.307 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.044 4.044 20 C -0.150 4.150 21 C -0.142 4.142 22 C -0.165 4.165 23 C -0.145 4.145 24 C -0.118 4.118 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.099 0.901 35 H 0.130 0.870 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.543 0.299 -10.076 11.504 hybrid contribution -1.317 -0.738 -1.275 1.976 sum 4.226 -0.439 -11.351 12.120 Atomic orbital electron populations 1.21333 0.93274 1.01274 1.02100 1.22379 0.95067 0.94241 1.05415 0.88285 1.23286 1.02048 1.01671 0.94841 1.21714 0.98535 0.98935 0.91819 1.21223 0.93399 1.02666 0.99081 1.21287 0.93381 0.92216 0.95391 1.60979 1.20320 1.17716 1.31125 1.18750 0.89771 0.85370 0.95529 0.96548 1.20807 0.92943 1.41193 0.96629 0.90045 1.25070 0.98326 0.94647 0.94896 1.69882 1.17946 1.48230 1.16695 0.87053 0.82062 0.78912 0.82643 1.20197 1.21348 1.19036 1.20515 0.93836 0.95812 0.94191 1.20990 0.99350 0.92603 1.02042 1.20940 0.94715 0.97519 1.01061 1.20885 0.95547 0.97294 1.02792 1.21079 0.99443 0.92972 1.00990 1.20996 0.94155 0.98051 0.98631 0.91864 0.92748 0.92806 0.89392 0.89484 0.89815 0.94172 0.92701 0.96759 0.90110 0.87031 0.92515 0.87358 0.87245 0.87337 0.87092 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.21 37.16 0.34 -1.34 16 2 C -0.15 -2.11 6.13 -90.62 -0.56 -2.67 16 3 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.18 -2.45 9.47 -26.73 -0.25 -2.70 16 5 C -0.11 -1.71 2.50 -154.51 -0.39 -2.10 16 6 C -0.11 -1.58 9.73 37.16 0.36 -1.22 16 7 C 0.11 2.03 4.65 -3.82 -0.02 2.01 16 8 N -0.67 -13.33 4.37 -109.18 -0.48 -13.81 16 9 C 0.21 4.82 2.18 -70.02 -0.15 4.67 16 10 H 0.02 0.39 4.14 -51.93 -0.22 0.18 16 11 C -0.48 -12.93 8.84 -34.44 -0.30 -13.23 16 12 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 15 Si 0.87 20.95 27.04 -169.99 -4.60 16.36 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.10 6.67 56.52 0.38 -5.72 16 19 C -0.04 -0.89 4.64 -104.63 -0.49 -1.37 16 20 C -0.13 -2.58 9.67 -39.59 -0.38 -2.96 16 21 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 22 C -0.15 -2.36 10.05 -39.58 -0.40 -2.75 16 23 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 24 C -0.10 -1.92 9.08 -39.59 -0.36 -2.28 16 25 H 0.06 0.94 8.02 -51.93 -0.42 0.52 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.75 7.77 -51.93 -0.40 0.35 16 28 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 29 H 0.09 1.18 7.96 -51.93 -0.41 0.77 16 30 H 0.08 1.33 6.70 -51.92 -0.35 0.99 16 31 H 0.04 0.51 7.90 -51.93 -0.41 0.10 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.01 0.28 7.69 -51.93 -0.40 -0.12 16 34 H 0.08 1.76 7.87 -51.93 -0.41 1.35 16 35 H 0.31 5.68 8.03 -39.29 -0.32 5.36 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.11 2.09 8.00 -52.48 -0.42 1.67 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.13 2.40 7.90 -52.48 -0.41 1.99 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -28.64 332.97 -9.47 -38.11 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.70 Total: 9.17 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -3.49 Total: -29.01 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.30 Total: -39.64 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.60 Total: 16.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.64 -9.47 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704290464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.271 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds