Wall clock time and date at job start Mon Mar 30 2020 07:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 115.55009 * 2 1 4 4 C 1.52998 * 117.50266 * 214.28773 * 2 1 3 5 5 C 1.52998 * 60.00319 * 252.50874 * 4 2 1 6 6 C 1.52995 * 117.51857 * 252.52095 * 5 4 2 7 7 C 1.53002 * 117.49997 * 107.48284 * 5 4 2 8 8 N 1.46902 * 109.46802 * 111.37970 * 7 5 4 9 9 C 1.46894 * 111.00241 * 180.02562 * 8 7 5 10 10 H 1.09007 * 109.46928 * 34.99733 * 9 8 7 11 11 C 1.50697 * 109.47266 * 275.00315 * 9 8 7 12 12 H 1.08001 * 119.99898 * 303.88759 * 11 9 8 13 13 C 1.37874 * 120.00547 * 123.88503 * 11 9 8 14 14 N 1.31514 * 120.00607 * 172.88539 * 13 11 9 15 15 Si 1.86808 * 119.99666 * 352.89020 * 13 11 9 16 16 H 1.48499 * 109.46904 * 85.59422 * 15 13 11 17 17 H 1.48494 * 109.46887 * 205.59184 * 15 13 11 18 18 H 1.48494 * 109.46851 * 325.59163 * 15 13 11 19 19 C 1.50705 * 109.47375 * 154.99818 * 9 8 7 20 20 C 1.38229 * 119.99925 * 225.96508 * 19 9 8 21 21 C 1.38233 * 119.99948 * 179.97438 * 20 19 9 22 22 C 1.38239 * 119.99933 * 0.02562 * 21 20 19 23 23 C 1.38238 * 119.99954 * 359.97438 * 22 21 20 24 24 C 1.38227 * 119.99619 * 45.99395 * 19 9 8 25 25 H 1.09007 * 109.46864 * 274.33212 * 1 2 3 26 26 H 1.08995 * 109.47201 * 34.33333 * 1 2 3 27 27 H 1.09002 * 109.46685 * 154.33784 * 1 2 3 28 28 H 1.08997 * 117.49782 * 145.01486 * 4 2 1 29 29 H 1.09006 * 117.49512 * 0.02562 * 4 2 1 30 30 H 1.09011 * 109.46818 * 248.71615 * 6 5 4 31 31 H 1.08999 * 109.47352 * 8.71095 * 6 5 4 32 32 H 1.08989 * 109.47779 * 128.71363 * 6 5 4 33 33 H 1.09006 * 109.47017 * 351.38486 * 7 5 4 34 34 H 1.08995 * 109.47224 * 231.37750 * 7 5 4 35 35 H 1.00901 * 110.99973 * 303.95638 * 8 7 5 36 36 H 0.96989 * 120.00342 * 179.97438 * 14 13 11 37 37 H 1.08003 * 120.00468 * 0.02562 * 20 19 9 38 38 H 1.08003 * 120.00242 * 180.02562 * 21 20 19 39 39 H 1.07995 * 119.99864 * 179.70049 * 22 21 20 40 40 H 1.07995 * 119.99751 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00396 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1212 -0.7645 5 6 2.2365 -1.1207 0.7655 6 6 3.5487 -0.7751 1.4722 7 6 1.3589 -2.1556 1.4724 8 7 2.2125 -3.1428 2.1466 9 6 1.4024 -4.1550 2.8373 10 1 0.4999 -4.3543 2.2593 11 6 1.0215 -3.6467 4.2039 12 1 1.7887 -3.3353 4.8973 13 6 -0.3063 -3.5792 4.5690 14 7 -0.6337 -3.2702 5.8047 15 14 -1.6404 -3.9269 3.3084 16 1 -1.8924 -5.3890 3.2449 17 1 -2.8887 -3.2261 3.7029 18 1 -1.2004 -3.4420 1.9756 19 6 2.1997 -5.4261 2.9782 20 6 1.6198 -6.6431 2.6729 21 6 2.3512 -7.8090 2.8017 22 6 3.6625 -7.7578 3.2363 23 6 4.2425 -6.5406 3.5416 24 6 3.5107 -5.3748 3.4133 25 1 -0.3633 0.0776 1.0248 26 1 -0.3633 0.8486 -0.5796 27 1 -0.3633 -0.9263 -0.4451 28 1 3.1715 -0.8755 -1.2679 29 1 1.6112 -1.8587 -1.2679 30 1 3.9374 -1.6629 1.9713 31 1 4.2746 -0.4234 0.7391 32 1 3.3692 0.0070 2.2098 33 1 0.7296 -2.6600 0.7390 34 1 0.7296 -1.6560 2.2089 35 1 2.8508 -3.5740 1.4949 36 1 -1.5678 -3.2224 6.0614 37 1 0.5954 -6.6832 2.3330 38 1 1.8983 -8.7599 2.5628 39 1 4.2325 -8.6690 3.3415 40 1 5.2668 -6.5007 3.8815 41 1 3.9638 -4.4239 3.6519 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704290464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:42 Heat of formation + Delta-G solvation = 26.908158 kcal Electronic energy + Delta-G solvation = -19541.631565 eV Core-core repulsion = 16807.006814 eV Total energy + Delta-G solvation = -2734.624751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.31208 -39.59348 -36.77462 -34.31460 -32.27356 -31.61314 -30.62055 -28.81169 -27.80032 -26.42724 -23.98399 -23.19569 -21.96567 -21.43295 -19.57517 -19.04375 -17.64189 -16.61658 -16.43092 -16.19875 -15.91259 -15.33111 -15.17880 -14.90265 -14.62075 -14.16788 -14.02481 -13.83819 -13.78826 -13.51754 -13.23400 -12.94654 -12.90829 -12.83547 -12.52588 -12.25984 -12.08763 -11.90155 -11.74249 -11.60216 -11.46076 -10.81441 -10.67320 -10.29523 -9.66619 -9.41074 -8.99950 -8.32071 -6.31996 0.63436 0.68185 1.23827 1.25833 1.33848 2.26259 2.80901 2.93044 3.17469 3.48065 3.80160 3.94270 4.08076 4.18343 4.20834 4.27183 4.36185 4.43231 4.43893 4.56753 4.69834 4.80019 4.86072 4.88488 4.91081 4.93321 4.95188 5.07948 5.13213 5.23647 5.25113 5.31834 5.34250 5.43760 5.51443 5.64428 5.71524 5.75199 5.93652 6.11742 6.29360 6.50327 6.70284 6.94194 7.31313 8.85142 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.008094 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.293604 B = 3458.408013 C = 4591.685906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.147 4.147 3 H 0.117 0.883 4 C -0.160 4.160 5 C -0.134 4.134 6 C -0.101 4.101 7 C 0.114 3.886 8 N -0.670 5.670 9 C 0.221 3.779 10 H 0.009 0.991 11 C -0.473 4.473 12 H 0.034 0.966 13 C 0.018 3.982 14 N -0.943 5.943 15 Si 0.926 3.074 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.251 1.251 19 C -0.073 4.073 20 C -0.151 4.151 21 C -0.122 4.122 22 C -0.136 4.136 23 C -0.124 4.124 24 C -0.115 4.115 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.011 0.989 34 H 0.043 0.957 35 H 0.328 0.672 36 H 0.265 0.735 37 H 0.105 0.895 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 -1.500 -13.412 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.166 4.166 3 H 0.135 0.865 4 C -0.196 4.196 5 C -0.135 4.135 6 C -0.158 4.158 7 C -0.016 4.016 8 N -0.301 5.301 9 C 0.113 3.887 10 H 0.026 0.974 11 C -0.512 4.512 12 H 0.052 0.948 13 C -0.180 4.180 14 N -0.583 5.583 15 Si 0.751 3.249 16 H -0.192 1.192 17 H -0.213 1.213 18 H -0.176 1.176 19 C -0.074 4.074 20 C -0.169 4.169 21 C -0.140 4.140 22 C -0.154 4.154 23 C -0.142 4.142 24 C -0.133 4.133 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.146 0.854 36 H 0.074 0.926 37 H 0.123 0.877 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.160 0.840 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.843 -1.081 -12.728 14.492 hybrid contribution -1.559 -0.359 -0.442 1.659 sum 5.284 -1.439 -13.171 14.264 Atomic orbital electron populations 1.21355 0.93448 1.02114 1.01254 1.22506 0.95077 0.94781 1.04203 0.86538 1.23336 1.02815 1.00847 0.92634 1.21601 0.98769 0.99641 0.93449 1.21151 0.93647 1.01583 0.99390 1.21154 0.93572 0.92520 0.94339 1.60712 1.20253 1.17227 1.31878 1.18496 0.90386 0.86736 0.93068 0.97380 1.20926 0.91847 1.40474 0.97939 0.94756 1.25807 1.00700 0.94916 0.96591 1.70031 1.18343 1.51064 1.18882 0.86074 0.78966 0.79154 0.80718 1.19153 1.21317 1.17565 1.20400 0.94818 0.95343 0.96852 1.21138 0.99663 0.93183 1.02944 1.21319 0.95078 0.97753 0.99851 1.21376 0.95283 0.98417 1.00332 1.21431 1.00646 0.92282 0.99808 1.21014 0.93963 0.98944 0.99395 0.93845 0.90265 0.93361 0.87043 0.89444 0.91498 0.91440 0.93821 0.97101 0.93892 0.85448 0.92605 0.87711 0.84063 0.83312 0.84035 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.27 9.21 71.98 0.66 -2.61 16 2 C -0.15 -3.79 6.13 -10.79 -0.07 -3.86 16 3 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 4 C -0.16 -3.86 9.47 30.59 0.29 -3.57 16 5 C -0.13 -4.08 2.50 -52.18 -0.13 -4.21 16 6 C -0.10 -2.92 9.73 71.98 0.70 -2.22 16 7 C 0.11 4.41 4.65 86.30 0.40 4.81 16 8 N -0.67 -27.41 4.37 -499.35 -2.18 -29.59 16 9 C 0.22 10.34 2.18 43.42 0.09 10.43 16 10 H 0.01 0.41 4.14 -2.38 -0.01 0.40 16 11 C -0.47 -27.10 8.84 25.60 0.23 -26.88 16 12 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 13 C 0.02 1.04 5.47 84.65 0.46 1.50 16 14 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 15 Si 0.93 44.75 27.04 68.60 1.85 46.61 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 17 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 18 H -0.25 -11.40 6.67 99.48 0.66 -10.74 16 19 C -0.07 -3.09 4.64 -19.87 -0.09 -3.18 16 20 C -0.15 -5.77 9.67 22.27 0.22 -5.56 16 21 C -0.12 -3.77 10.05 22.27 0.22 -3.55 16 22 C -0.14 -3.82 10.05 22.27 0.22 -3.59 16 23 C -0.12 -3.82 10.05 22.27 0.22 -3.60 16 24 C -0.11 -4.39 9.08 22.27 0.20 -4.19 16 25 H 0.04 1.30 8.02 -2.38 -0.02 1.28 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 1.30 7.77 -2.39 -0.02 1.28 16 28 H 0.11 2.22 8.05 -2.39 -0.02 2.20 16 29 H 0.09 2.14 7.96 -2.38 -0.02 2.12 16 30 H 0.07 2.14 6.70 -2.38 -0.02 2.13 16 31 H 0.07 1.56 7.90 -2.39 -0.02 1.55 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.01 0.43 7.69 -2.38 -0.02 0.41 16 34 H 0.04 1.97 7.87 -2.39 -0.02 1.95 16 35 H 0.33 11.98 8.03 -89.69 -0.72 11.26 16 36 H 0.26 15.68 8.31 -92.72 -0.77 14.91 16 37 H 0.10 3.98 8.00 -2.91 -0.02 3.96 16 38 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 39 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 40 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 41 H 0.11 4.51 7.90 -2.91 -0.02 4.49 16 Total: -1.00 -66.08 332.97 3.84 -62.24 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.23 Total: 30.10 kcal Atomic # 6 Polarization: -53.91 SS G_CDS: 3.64 Total: -50.27 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -1.88 Total: -88.68 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.85 Total: 46.61 kcal Total: -66.08 3.84 -62.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704290464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.148 kcal (2) G-P(sol) polarization free energy of solvation -66.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds