Wall clock time and date at job start Mon Mar 30 2020 07:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46919 * 2 1 4 4 C 1.52994 * 109.47114 * 119.99846 * 2 1 3 5 5 H 1.09004 * 109.47653 * 305.43195 * 4 2 1 6 6 N 1.46507 * 109.47011 * 185.43094 * 4 2 1 7 7 C 1.38854 * 119.99604 * 119.27400 * 6 4 2 8 8 C 1.39562 * 119.84664 * 351.88451 * 7 6 4 9 9 C 1.36339 * 120.16035 * 180.23369 * 8 7 6 10 10 C 1.40879 * 119.83567 * 359.51439 * 9 8 7 11 11 C 1.41142 * 120.15625 * 180.27606 * 10 9 8 12 12 H 1.08004 * 119.99847 * 333.22180 * 11 10 9 13 13 C 1.39861 * 120.00160 * 153.22219 * 11 10 9 14 14 N 1.30901 * 120.00346 * 341.95588 * 13 11 10 15 15 Si 1.86807 * 120.00096 * 161.95182 * 13 11 10 16 16 H 1.48499 * 109.47205 * 94.94608 * 15 13 11 17 17 H 1.48495 * 109.47305 * 214.94791 * 15 13 11 18 18 H 1.48502 * 109.46858 * 334.94563 * 15 13 11 19 19 C 1.40882 * 119.69060 * 0.25997 * 10 9 8 20 20 C 1.36331 * 119.83652 * 359.97438 * 19 10 9 21 21 C 1.53002 * 109.47264 * 65.43096 * 4 2 1 22 22 C 1.52998 * 117.50168 * 248.74900 * 21 4 2 23 23 C 1.52991 * 117.50233 * 180.08407 * 21 4 2 24 24 H 1.08999 * 109.47259 * 299.99857 * 1 2 3 25 25 H 1.08995 * 109.47453 * 59.99618 * 1 2 3 26 26 H 1.08996 * 109.47164 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46788 * 240.00314 * 2 1 3 28 28 H 1.08996 * 109.47166 * 185.03138 * 3 2 1 29 29 H 1.09006 * 109.47469 * 305.03430 * 3 2 1 30 30 H 1.09007 * 109.47220 * 65.03374 * 3 2 1 31 31 H 0.96995 * 119.99616 * 299.27779 * 6 4 2 32 32 H 1.07998 * 119.91982 * 0.02678 * 8 7 6 33 33 H 1.08008 * 120.07913 * 179.79180 * 9 8 7 34 34 H 0.96999 * 120.00145 * 180.02562 * 14 13 11 35 35 H 1.08007 * 120.08012 * 180.02562 * 19 10 9 36 36 H 1.08001 * 119.92212 * 180.02562 * 20 19 10 37 37 H 1.09006 * 115.54580 * 34.41948 * 21 4 2 38 38 H 1.08998 * 117.49496 * 359.97438 * 22 21 4 39 39 H 1.09003 * 117.49797 * 145.02111 * 22 21 4 40 40 H 1.08998 * 117.50058 * 214.98077 * 23 21 4 41 41 H 1.09006 * 117.49976 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5995 -0.2666 2.1366 6 7 3.4992 -0.6090 1.3163 7 6 4.0979 0.0221 2.3987 8 6 3.3097 0.6955 3.3331 9 6 3.8912 1.3214 4.3956 10 6 5.2904 1.2784 4.5545 11 6 5.8989 1.9191 5.6551 12 1 5.4183 2.7675 6.1195 13 6 7.1243 1.4552 6.1444 14 7 7.5371 0.2509 5.8399 15 14 8.1719 2.5542 7.2326 16 1 7.8899 2.2523 8.6590 17 1 9.6085 2.3071 6.9490 18 1 7.8503 3.9772 6.9549 19 6 6.0793 0.5928 3.6099 20 6 5.4846 -0.0245 2.5497 21 6 1.6446 -2.1977 1.1829 22 6 0.5963 -2.6939 2.1808 23 6 2.0640 -3.0945 2.3492 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1262 1.4439 -0.0901 29 1 1.6049 1.9818 -0.8415 30 1 1.7521 1.9297 0.9317 31 1 4.0470 -0.9755 0.6047 32 1 2.2369 0.7237 3.2124 33 1 3.2803 1.8450 5.1161 34 1 8.3868 -0.0709 6.1795 35 1 7.1524 0.5556 3.7258 36 1 6.0880 -0.5508 1.8250 37 1 1.6387 -2.6385 0.1859 38 1 0.1887 -1.9685 2.8848 39 1 -0.0989 -3.4614 1.8405 40 1 2.3338 -4.1254 2.1198 41 1 2.6222 -2.6328 3.1638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705325994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:09 Heat of formation + Delta-G solvation = 33.388198 kcal Electronic energy + Delta-G solvation = -19348.035436 eV Core-core repulsion = 16613.691680 eV Total energy + Delta-G solvation = -2734.343756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.98714 -37.22058 -35.10148 -33.88019 -32.24071 -29.53964 -28.60152 -26.99984 -26.06741 -23.88168 -22.12250 -21.44850 -20.72610 -20.21568 -19.35074 -17.11968 -16.03977 -15.63488 -15.34948 -14.89742 -14.47458 -13.87061 -13.73422 -13.04615 -12.91630 -12.59944 -12.30294 -12.07776 -11.94971 -11.75215 -11.61916 -11.29886 -11.25002 -11.06714 -10.98692 -10.81046 -10.75395 -10.48947 -10.30802 -10.07265 -9.87853 -9.56853 -9.21899 -9.14173 -8.49659 -7.46587 -6.61203 -6.31231 -4.00134 2.94067 3.12308 3.16855 3.21964 3.37212 3.87813 4.08477 4.51392 4.73254 4.78987 5.07142 5.18386 5.21685 5.30664 5.39677 5.62730 5.76127 5.79450 5.80276 5.89310 5.90540 6.05151 6.10370 6.17133 6.22550 6.31251 6.31991 6.37679 6.44212 6.56468 6.62958 6.91236 7.08891 7.23187 7.35486 7.64018 7.69812 7.83685 8.18334 8.36879 8.55437 8.73769 8.85691 9.09364 9.18891 10.41450 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.031410 B = 0.004725 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.233942 B = 5924.404161 C = 6257.678374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.138 4.138 4 C 0.190 3.810 5 H 0.087 0.913 6 N -0.749 5.749 7 C 0.102 3.898 8 C -0.163 4.163 9 C -0.186 4.186 10 C 0.075 3.925 11 C -0.470 4.470 12 H 0.071 0.929 13 C 0.076 3.924 14 N -0.809 5.809 15 Si 0.900 3.100 16 H -0.274 1.274 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.120 4.120 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.180 4.180 23 C -0.167 4.167 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.383 0.617 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.275 0.725 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 -3.217 -9.074 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.195 4.195 4 C 0.083 3.917 5 H 0.105 0.895 6 N -0.381 5.381 7 C 0.005 3.995 8 C -0.185 4.185 9 C -0.206 4.206 10 C 0.072 3.928 11 C -0.501 4.501 12 H 0.090 0.910 13 C -0.139 4.139 14 N -0.437 5.437 15 Si 0.725 3.275 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.140 4.140 20 C -0.187 4.187 21 C -0.182 4.182 22 C -0.217 4.217 23 C -0.204 4.204 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.215 0.785 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.361 -3.331 -8.935 13.363 hybrid contribution 0.759 0.122 0.294 0.823 sum -8.602 -3.209 -8.642 12.609 Atomic orbital electron populations 1.21790 0.95376 1.01580 1.01342 1.21498 0.95290 0.96925 0.98590 1.21711 1.01760 0.95151 1.00924 1.20351 0.82852 0.90826 0.97702 0.89513 1.43815 1.03399 1.66974 1.23938 1.17305 0.91471 0.99989 0.90733 1.19896 0.96542 1.04223 0.97816 1.20565 0.94721 1.06104 0.99217 1.17467 0.90460 0.92389 0.92477 1.19336 1.03713 1.13902 1.13183 0.91049 1.25761 0.97696 0.94400 0.96029 1.69858 1.19991 1.14899 1.38941 0.86451 0.79242 0.81653 0.80184 1.19910 1.20322 1.18697 1.20837 0.99544 1.00594 0.93040 1.20038 0.92184 1.05914 1.00523 1.22790 1.03899 0.96799 0.94712 1.22950 0.92340 1.03530 1.02928 1.22834 0.96945 0.99379 1.01234 0.92816 0.93183 0.92564 0.91903 0.92030 0.93842 0.92760 0.78491 0.89450 0.89272 0.91412 0.86833 0.89642 0.88680 0.89011 0.89438 0.89588 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.02 37.16 0.34 -1.19 16 2 C -0.10 -1.27 2.65 -90.62 -0.24 -1.51 16 3 C -0.14 -1.87 8.88 37.16 0.33 -1.54 16 4 C 0.19 2.70 2.03 -67.93 -0.14 2.57 16 5 H 0.09 1.39 5.08 -51.93 -0.26 1.13 16 6 N -0.75 -12.50 4.03 -52.03 -0.21 -12.71 16 7 C 0.10 2.15 6.65 -83.69 -0.56 1.59 16 8 C -0.16 -3.59 9.20 -39.77 -0.37 -3.96 16 9 C -0.19 -4.59 9.74 -39.27 -0.38 -4.98 16 10 C 0.07 2.03 5.55 -106.80 -0.59 1.43 16 11 C -0.47 -12.87 9.02 -37.87 -0.34 -13.21 16 12 H 0.07 1.89 7.91 -52.48 -0.42 1.48 16 13 C 0.08 1.98 5.11 -17.34 -0.09 1.89 16 14 N -0.81 -21.72 11.12 55.54 0.62 -21.10 16 15 Si 0.90 19.41 29.60 -169.99 -5.03 14.38 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 19 C -0.12 -3.14 8.62 -39.27 -0.34 -3.48 16 20 C -0.16 -3.80 9.83 -39.77 -0.39 -4.19 16 21 C -0.16 -2.07 4.37 -90.62 -0.40 -2.47 16 22 C -0.18 -2.15 10.18 -26.69 -0.27 -2.43 16 23 C -0.17 -2.31 10.13 -26.70 -0.27 -2.58 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.56 7.39 -51.93 -0.38 0.18 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.93 7.64 -51.93 -0.40 0.54 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.38 5.98 8.84 -40.82 -0.36 5.62 16 32 H 0.09 1.74 5.80 -52.49 -0.30 1.44 16 33 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 34 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 35 H 0.11 3.10 6.33 -52.48 -0.33 2.76 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.10 1.12 8.11 -51.93 -0.42 0.70 16 38 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 331.74 15.07 5.00 5.00 Total: -1.00 -27.16 331.74 -9.99 -37.15 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -6.66 Total: 11.34 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: -3.71 Total: -34.06 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.41 Total: -33.81 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.16 -9.99 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705325994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.542 kcal (2) G-P(sol) polarization free energy of solvation -27.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds