Wall clock time and date at job start Mon Mar 30 2020 07:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46919 * 2 1 4 4 C 1.52994 * 109.47114 * 119.99846 * 2 1 3 5 5 H 1.09004 * 109.47653 * 305.43195 * 4 2 1 6 6 N 1.46507 * 109.47011 * 185.43094 * 4 2 1 7 7 C 1.38854 * 119.99604 * 119.27400 * 6 4 2 8 8 C 1.39562 * 119.84664 * 351.88451 * 7 6 4 9 9 C 1.36339 * 120.16035 * 180.23369 * 8 7 6 10 10 C 1.40879 * 119.83567 * 359.51439 * 9 8 7 11 11 C 1.41142 * 120.15625 * 180.27606 * 10 9 8 12 12 H 1.08004 * 119.99847 * 333.22180 * 11 10 9 13 13 C 1.39861 * 120.00160 * 153.22219 * 11 10 9 14 14 N 1.30901 * 120.00346 * 341.95588 * 13 11 10 15 15 Si 1.86807 * 120.00096 * 161.95182 * 13 11 10 16 16 H 1.48499 * 109.47205 * 94.94608 * 15 13 11 17 17 H 1.48495 * 109.47305 * 214.94791 * 15 13 11 18 18 H 1.48502 * 109.46858 * 334.94563 * 15 13 11 19 19 C 1.40882 * 119.69060 * 0.25997 * 10 9 8 20 20 C 1.36331 * 119.83652 * 359.97438 * 19 10 9 21 21 C 1.53002 * 109.47264 * 65.43096 * 4 2 1 22 22 C 1.52998 * 117.50168 * 248.74900 * 21 4 2 23 23 C 1.52991 * 117.50233 * 180.08407 * 21 4 2 24 24 H 1.08999 * 109.47259 * 299.99857 * 1 2 3 25 25 H 1.08995 * 109.47453 * 59.99618 * 1 2 3 26 26 H 1.08996 * 109.47164 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46788 * 240.00314 * 2 1 3 28 28 H 1.08996 * 109.47166 * 185.03138 * 3 2 1 29 29 H 1.09006 * 109.47469 * 305.03430 * 3 2 1 30 30 H 1.09007 * 109.47220 * 65.03374 * 3 2 1 31 31 H 0.96995 * 119.99616 * 299.27779 * 6 4 2 32 32 H 1.07998 * 119.91982 * 0.02678 * 8 7 6 33 33 H 1.08008 * 120.07913 * 179.79180 * 9 8 7 34 34 H 0.96999 * 120.00145 * 180.02562 * 14 13 11 35 35 H 1.08007 * 120.08012 * 180.02562 * 19 10 9 36 36 H 1.08001 * 119.92212 * 180.02562 * 20 19 10 37 37 H 1.09006 * 115.54580 * 34.41948 * 21 4 2 38 38 H 1.08998 * 117.49496 * 359.97438 * 22 21 4 39 39 H 1.09003 * 117.49797 * 145.02111 * 22 21 4 40 40 H 1.08998 * 117.50058 * 214.98077 * 23 21 4 41 41 H 1.09006 * 117.49976 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5995 -0.2666 2.1366 6 7 3.4992 -0.6090 1.3163 7 6 4.0979 0.0221 2.3987 8 6 3.3097 0.6955 3.3331 9 6 3.8912 1.3214 4.3956 10 6 5.2904 1.2784 4.5545 11 6 5.8989 1.9191 5.6551 12 1 5.4183 2.7675 6.1195 13 6 7.1243 1.4552 6.1444 14 7 7.5371 0.2509 5.8399 15 14 8.1719 2.5542 7.2326 16 1 7.8899 2.2523 8.6590 17 1 9.6085 2.3071 6.9490 18 1 7.8503 3.9772 6.9549 19 6 6.0793 0.5928 3.6099 20 6 5.4846 -0.0245 2.5497 21 6 1.6446 -2.1977 1.1829 22 6 0.5963 -2.6939 2.1808 23 6 2.0640 -3.0945 2.3492 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1262 1.4439 -0.0901 29 1 1.6049 1.9818 -0.8415 30 1 1.7521 1.9297 0.9317 31 1 4.0470 -0.9755 0.6047 32 1 2.2369 0.7237 3.2124 33 1 3.2803 1.8450 5.1161 34 1 8.3868 -0.0709 6.1795 35 1 7.1524 0.5556 3.7258 36 1 6.0880 -0.5508 1.8250 37 1 1.6387 -2.6385 0.1859 38 1 0.1887 -1.9685 2.8848 39 1 -0.0989 -3.4614 1.8405 40 1 2.3338 -4.1254 2.1198 41 1 2.6222 -2.6328 3.1638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705325994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:08 Heat of formation + Delta-G solvation = 21.223909 kcal Electronic energy + Delta-G solvation = -19348.562919 eV Core-core repulsion = 16613.691680 eV Total energy + Delta-G solvation = -2734.871239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.37551 -38.82711 -36.33080 -35.49662 -33.89162 -31.40898 -30.39279 -28.05010 -27.46762 -25.61103 -23.15854 -23.13940 -22.07518 -21.72218 -20.67765 -19.05119 -17.67797 -17.09617 -16.64783 -16.40059 -15.65438 -15.62090 -14.81870 -14.67425 -14.53415 -14.00088 -13.80792 -13.63287 -13.37377 -13.30522 -12.90636 -12.78215 -12.73788 -12.40127 -12.32146 -12.26380 -12.13141 -11.75476 -11.60876 -11.41362 -11.21634 -11.11294 -10.93117 -10.83894 -10.21176 -9.38655 -8.54005 -8.07859 -5.98860 1.12442 1.19934 1.39645 1.52409 1.59441 2.28033 2.68032 2.86938 3.28654 3.64991 3.84733 4.04271 4.11137 4.22174 4.26387 4.38958 4.44877 4.49646 4.62159 4.81312 4.83307 4.87301 4.88457 5.01989 5.06831 5.09772 5.17053 5.20330 5.30192 5.31859 5.32948 5.38072 5.43595 5.53365 5.53408 5.76017 5.82769 5.95431 6.20195 6.42970 6.71179 6.93407 7.10265 7.18382 7.36915 8.50484 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.031410 B = 0.004725 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.233942 B = 5924.404161 C = 6257.678374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C -0.137 4.137 4 C 0.186 3.814 5 H 0.069 0.931 6 N -0.738 5.738 7 C 0.132 3.868 8 C -0.168 4.168 9 C -0.194 4.194 10 C 0.034 3.966 11 C -0.509 4.509 12 H 0.065 0.935 13 C 0.033 3.967 14 N -0.845 5.845 15 Si 0.973 3.027 16 H -0.266 1.266 17 H -0.268 1.268 18 H -0.262 1.262 19 C -0.137 4.137 20 C -0.178 4.178 21 C -0.156 4.156 22 C -0.162 4.162 23 C -0.185 4.185 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.392 0.608 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.281 0.719 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.046 -3.955 -10.808 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C -0.195 4.195 4 C 0.081 3.919 5 H 0.087 0.913 6 N -0.370 5.370 7 C 0.032 3.968 8 C -0.190 4.190 9 C -0.214 4.214 10 C 0.032 3.968 11 C -0.541 4.541 12 H 0.083 0.917 13 C -0.178 4.178 14 N -0.473 5.473 15 Si 0.795 3.205 16 H -0.191 1.191 17 H -0.193 1.193 18 H -0.186 1.186 19 C -0.157 4.157 20 C -0.200 4.200 21 C -0.175 4.175 22 C -0.199 4.199 23 C -0.223 4.223 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.226 0.774 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.132 0.868 40 H 0.117 0.883 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.040 -4.089 -10.708 15.914 hybrid contribution 1.107 0.271 0.679 1.327 sum -9.932 -3.818 -10.029 14.622 Atomic orbital electron populations 1.21762 0.93569 1.02544 1.01841 1.21431 0.96674 0.95682 0.97720 1.21700 1.00554 0.96316 1.00897 1.20534 0.80804 0.92416 0.98191 0.91317 1.43875 1.04917 1.65613 1.22588 1.17327 0.90802 0.97810 0.90850 1.20105 0.97882 1.03786 0.97265 1.20749 0.94177 1.06359 1.00153 1.17768 0.91655 0.94087 0.93332 1.19553 1.05508 1.14643 1.14399 0.91663 1.26563 0.98376 0.95533 0.97339 1.69922 1.20646 1.16333 1.40417 0.85335 0.77518 0.79352 0.78290 1.19066 1.19290 1.18561 1.20760 0.98707 1.01963 0.94310 1.20221 0.93430 1.06041 1.00308 1.22748 1.04089 0.95158 0.95533 1.23029 0.91584 1.03513 1.01814 1.22755 0.98514 1.00091 1.00897 0.93365 0.91739 0.91367 0.90477 0.94031 0.91890 0.94441 0.77380 0.87090 0.89041 0.90871 0.88844 0.87707 0.86493 0.89487 0.86786 0.88297 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.02 71.98 0.65 -1.79 16 2 C -0.10 -2.05 2.65 -10.79 -0.03 -2.07 16 3 C -0.14 -3.43 8.88 71.98 0.64 -2.79 16 4 C 0.19 4.86 2.03 44.99 0.09 4.96 16 5 H 0.07 2.08 5.08 -2.39 -0.01 2.06 16 6 N -0.74 -23.41 4.03 -318.53 -1.28 -24.70 16 7 C 0.13 5.51 6.65 38.67 0.26 5.76 16 8 C -0.17 -7.45 9.20 22.15 0.20 -7.25 16 9 C -0.19 -9.92 9.74 22.47 0.22 -9.70 16 10 C 0.03 1.95 5.55 -21.27 -0.12 1.83 16 11 C -0.51 -29.25 9.02 23.38 0.21 -29.04 16 12 H 0.07 3.65 7.91 -2.91 -0.02 3.63 16 13 C 0.03 1.80 5.11 85.22 0.44 2.23 16 14 N -0.84 -47.09 11.12 21.81 0.24 -46.84 16 15 Si 0.97 40.92 29.60 68.60 2.03 42.95 16 16 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 C -0.14 -7.49 8.62 22.47 0.19 -7.30 16 20 C -0.18 -8.32 9.83 22.15 0.22 -8.10 16 21 C -0.16 -3.48 4.37 -10.80 -0.05 -3.52 16 22 C -0.16 -3.37 10.18 30.62 0.31 -3.05 16 23 C -0.19 -4.80 10.13 30.62 0.31 -4.49 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.05 7.39 -2.39 -0.02 1.03 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.19 7.64 -2.39 -0.02 1.17 16 29 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.39 11.35 8.84 -92.71 -0.82 10.53 16 32 H 0.11 4.35 5.80 -2.91 -0.02 4.33 16 33 H 0.09 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 35 H 0.09 5.38 6.33 -2.91 -0.02 5.37 16 36 H 0.10 4.40 8.06 -2.91 -0.02 4.37 16 37 H 0.12 2.19 8.11 -2.38 -0.02 2.17 16 38 H 0.09 1.92 8.05 -2.39 -0.02 1.90 16 39 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -61.45 331.74 4.72 -56.73 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: 0.19 Total: 36.18 kcal Atomic # 6 Polarization: -67.87 SS G_CDS: 3.55 Total: -64.32 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -1.04 Total: -71.54 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -61.45 4.72 -56.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705325994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.957 kcal (2) G-P(sol) polarization free energy of solvation -61.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds