Wall clock time and date at job start Mon Mar 30 2020 07:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46866 * 2 1 4 4 C 1.53004 * 109.47179 * 119.99701 * 2 1 3 5 5 H 1.08997 * 109.47053 * 304.96198 * 4 2 1 6 6 N 1.46492 * 109.47334 * 184.95819 * 4 2 1 7 7 C 1.39689 * 120.00141 * 132.49624 * 6 4 2 8 8 C 1.39334 * 119.94772 * 16.24614 * 7 6 4 9 9 C 1.38484 * 120.42012 * 179.97438 * 8 7 6 10 10 C 1.37686 * 120.32532 * 0.02562 * 9 8 7 11 11 C 1.40750 * 119.89237 * 359.97438 * 10 9 8 12 12 C 1.41418 * 120.20322 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99847 * 333.90123 * 12 11 10 14 14 C 1.39922 * 119.99743 * 153.90543 * 12 11 10 15 15 N 1.30832 * 120.00416 * 347.27964 * 14 12 11 16 16 Si 1.86805 * 119.99974 * 167.27734 * 14 12 11 17 17 H 1.48503 * 109.46945 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46919 * 119.99825 * 16 14 12 19 19 H 1.48491 * 109.47451 * 239.99904 * 16 14 12 20 20 C 1.38279 * 119.95197 * 196.24482 * 7 6 4 21 21 C 1.53006 * 109.46623 * 64.95843 * 4 2 1 22 22 C 1.52997 * 117.49819 * 248.74616 * 21 4 2 23 23 C 1.52997 * 117.49522 * 180.08474 * 21 4 2 24 24 H 1.08997 * 109.47725 * 299.99977 * 1 2 3 25 25 H 1.09001 * 109.47569 * 60.00243 * 1 2 3 26 26 H 1.09003 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.08989 * 109.47355 * 239.99978 * 2 1 3 28 28 H 1.09003 * 109.46941 * 185.15546 * 3 2 1 29 29 H 1.08998 * 109.47136 * 305.16080 * 3 2 1 30 30 H 1.09006 * 109.47206 * 65.16331 * 3 2 1 31 31 H 0.97001 * 120.00147 * 312.50430 * 6 4 2 32 32 H 1.07998 * 119.78790 * 359.97438 * 8 7 6 33 33 H 1.07995 * 119.83161 * 179.97438 * 9 8 7 34 34 H 1.07999 * 120.05299 * 180.02562 * 10 9 8 35 35 H 0.96999 * 120.00279 * 180.02562 * 15 14 12 36 36 H 1.07995 * 120.16142 * 0.27348 * 20 7 6 37 37 H 1.08992 * 115.54896 * 34.42073 * 21 4 2 38 38 H 1.08994 * 117.50076 * 359.97438 * 22 21 4 39 39 H 1.08994 * 117.49921 * 145.02550 * 22 21 4 40 40 H 1.09001 * 117.50338 * 214.98090 * 23 21 4 41 41 H 1.09008 * 117.49860 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6059 -0.2612 2.1370 6 7 3.5000 -0.6187 1.3105 7 6 4.1244 -0.2419 2.5019 8 6 3.4194 -0.2916 3.7027 9 6 4.0290 0.0792 4.8896 10 6 5.3393 0.5019 4.8957 11 6 6.0641 0.5573 3.6904 12 6 7.4105 0.9899 3.6892 13 1 7.7649 1.6543 4.4633 14 6 8.2834 0.5572 2.6849 15 7 7.9379 -0.4295 1.8983 16 14 9.9421 1.3884 2.4671 17 1 10.0910 2.4679 3.4760 18 1 11.0247 0.3883 2.6495 19 1 10.0295 1.9693 1.1033 20 6 5.4413 0.1799 2.4878 21 6 1.6343 -2.1952 1.1885 22 6 0.5866 -2.6815 2.1918 23 6 2.0523 -3.0916 2.3557 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1260 1.4440 -0.0923 29 1 1.6030 1.9824 -0.8401 30 1 1.7540 1.9290 0.9327 31 1 4.0332 -0.8124 0.5237 32 1 2.3910 -0.6214 3.7078 33 1 3.4735 0.0374 5.8148 34 1 5.8105 0.7896 5.8239 35 1 8.5432 -0.7297 1.2023 36 1 5.9873 0.2230 1.5571 37 1 1.6216 -2.6386 0.1929 38 1 0.1867 -1.9516 2.8955 39 1 -0.1151 -3.4452 1.8565 40 1 2.3142 -4.1250 2.1282 41 1 2.6167 -2.6314 3.1668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705379714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:14 Heat of formation + Delta-G solvation = 28.348614 kcal Electronic energy + Delta-G solvation = -19556.944365 eV Core-core repulsion = 16822.382077 eV Total energy + Delta-G solvation = -2734.562288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.92564 -37.03835 -35.01354 -33.77851 -32.60281 -29.37841 -28.20079 -26.98560 -25.21101 -24.98401 -22.04932 -21.25363 -20.74746 -19.99573 -19.36277 -17.19639 -15.74555 -15.57064 -15.10290 -14.81766 -14.53661 -14.13192 -13.64436 -13.01950 -12.87056 -12.69903 -12.30568 -12.15828 -11.98367 -11.72525 -11.47832 -11.18454 -11.15896 -11.04022 -10.94056 -10.72658 -10.57923 -10.48086 -10.19435 -10.00603 -9.79778 -9.52285 -9.39418 -9.16188 -8.64907 -7.23336 -6.65857 -6.09180 -4.28375 2.88705 3.12498 3.18066 3.27033 3.35663 3.95552 4.01481 4.55463 4.77136 4.79391 5.11243 5.22017 5.28262 5.38501 5.44332 5.67247 5.79289 5.84647 5.85449 5.91298 5.93294 6.05535 6.17809 6.22932 6.26420 6.35289 6.38712 6.49471 6.56878 6.61458 6.68788 6.93493 7.17716 7.20045 7.46267 7.51658 7.88939 8.00600 8.16720 8.24500 8.55540 8.80185 8.91328 9.06504 9.17703 10.32367 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.005561 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.944920 B = 5034.167711 C = 5422.373842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C -0.140 4.140 4 C 0.193 3.807 5 H 0.083 0.917 6 N -0.750 5.750 7 C 0.218 3.782 8 C -0.295 4.295 9 C -0.070 4.070 10 C -0.255 4.255 11 C 0.135 3.865 12 C -0.463 4.463 13 H 0.074 0.926 14 C 0.075 3.925 15 N -0.798 5.798 16 Si 0.905 3.095 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.274 1.274 20 C -0.223 4.223 21 C -0.163 4.163 22 C -0.182 4.182 23 C -0.170 4.170 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.388 0.612 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.275 0.725 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.600 -1.493 -4.677 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.197 4.197 4 C 0.086 3.914 5 H 0.101 0.899 6 N -0.381 5.381 7 C 0.120 3.880 8 C -0.318 4.318 9 C -0.089 4.089 10 C -0.276 4.276 11 C 0.132 3.868 12 C -0.493 4.493 13 H 0.093 0.907 14 C -0.141 4.141 15 N -0.425 5.425 16 Si 0.730 3.270 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.199 1.199 20 C -0.247 4.247 21 C -0.183 4.183 22 C -0.220 4.220 23 C -0.207 4.207 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.221 0.779 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.663 -1.612 -4.789 11.800 hybrid contribution 0.993 0.031 -0.453 1.092 sum -9.670 -1.580 -5.242 11.113 Atomic orbital electron populations 1.21774 0.95172 1.01669 1.01332 1.21430 0.95493 0.96812 0.98412 1.21734 1.01866 0.95192 1.00951 1.20314 0.82614 0.90916 0.97571 0.89889 1.44352 1.03535 1.78683 1.11564 1.17623 0.92133 0.93526 0.84742 1.19969 0.99189 1.20470 0.92157 1.20288 0.94755 0.98419 0.95441 1.20875 0.95494 1.14290 0.96937 1.17358 0.92140 0.87215 0.90057 1.19587 0.94411 1.26156 1.09197 0.90742 1.25851 1.00207 0.93530 0.94491 1.69852 1.36563 1.20454 1.15619 0.86318 0.81541 0.80126 0.79001 1.18561 1.20157 1.19942 1.20871 0.92523 1.12040 0.99277 1.22840 1.03643 0.97100 0.94717 1.22931 0.92446 1.03541 1.03073 1.22984 0.96717 0.99426 1.01576 0.92811 0.93120 0.92482 0.91655 0.91933 0.93632 0.92847 0.77872 0.89613 0.89836 0.89538 0.91403 0.86211 0.88764 0.89182 0.89588 0.89770 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.01 37.15 0.33 -1.22 16 2 C -0.10 -1.33 2.65 -90.62 -0.24 -1.57 16 3 C -0.14 -1.96 8.89 37.16 0.33 -1.63 16 4 C 0.19 2.93 1.74 -67.93 -0.12 2.81 16 5 H 0.08 1.39 5.80 -51.93 -0.30 1.09 16 6 N -0.75 -13.81 4.08 -52.22 -0.21 -14.03 16 7 C 0.22 4.93 6.59 -83.85 -0.55 4.38 16 8 C -0.30 -6.54 7.90 -39.08 -0.31 -6.85 16 9 C -0.07 -1.61 10.02 -39.69 -0.40 -2.01 16 10 C -0.26 -6.46 9.79 -38.83 -0.38 -6.84 16 11 C 0.14 3.68 5.57 -106.85 -0.60 3.08 16 12 C -0.46 -12.57 9.07 -37.74 -0.34 -12.92 16 13 H 0.07 1.96 7.88 -52.49 -0.41 1.55 16 14 C 0.08 1.93 5.23 -17.35 -0.09 1.84 16 15 N -0.80 -20.90 10.77 55.55 0.60 -20.30 16 16 Si 0.91 19.11 29.58 -169.99 -5.03 14.09 16 17 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 C -0.22 -5.77 8.53 -38.68 -0.33 -6.10 16 21 C -0.16 -2.27 4.34 -90.62 -0.39 -2.66 16 22 C -0.18 -2.30 10.18 -26.69 -0.27 -2.58 16 23 C -0.17 -2.55 10.09 -26.69 -0.27 -2.82 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.59 7.38 -51.93 -0.38 0.21 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.98 7.66 -51.93 -0.40 0.59 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.39 7.07 8.86 -40.82 -0.36 6.71 16 32 H 0.09 1.73 5.60 -52.49 -0.29 1.44 16 33 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 35 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 36 H 0.12 3.22 6.09 -52.49 -0.32 2.90 16 37 H 0.09 1.23 8.11 -51.93 -0.42 0.81 16 38 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.11 1.93 6.07 -51.92 -0.32 1.61 16 LS Contribution 328.25 15.07 4.95 4.95 Total: -1.00 -26.98 328.25 -9.89 -36.86 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -6.57 Total: 13.52 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: -3.63 Total: -35.08 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.39 Total: -34.33 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.98 -9.89 -36.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705379714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.212 kcal (2) G-P(sol) polarization free energy of solvation -26.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds