Wall clock time and date at job start Mon Mar 30 2020 07:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46866 * 2 1 4 4 C 1.53004 * 109.47179 * 119.99701 * 2 1 3 5 5 H 1.08997 * 109.47053 * 304.96198 * 4 2 1 6 6 N 1.46492 * 109.47334 * 184.95819 * 4 2 1 7 7 C 1.39689 * 120.00141 * 132.49624 * 6 4 2 8 8 C 1.39334 * 119.94772 * 16.24614 * 7 6 4 9 9 C 1.38484 * 120.42012 * 179.97438 * 8 7 6 10 10 C 1.37686 * 120.32532 * 0.02562 * 9 8 7 11 11 C 1.40750 * 119.89237 * 359.97438 * 10 9 8 12 12 C 1.41418 * 120.20322 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99847 * 333.90123 * 12 11 10 14 14 C 1.39922 * 119.99743 * 153.90543 * 12 11 10 15 15 N 1.30832 * 120.00416 * 347.27964 * 14 12 11 16 16 Si 1.86805 * 119.99974 * 167.27734 * 14 12 11 17 17 H 1.48503 * 109.46945 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46919 * 119.99825 * 16 14 12 19 19 H 1.48491 * 109.47451 * 239.99904 * 16 14 12 20 20 C 1.38279 * 119.95197 * 196.24482 * 7 6 4 21 21 C 1.53006 * 109.46623 * 64.95843 * 4 2 1 22 22 C 1.52997 * 117.49819 * 248.74616 * 21 4 2 23 23 C 1.52997 * 117.49522 * 180.08474 * 21 4 2 24 24 H 1.08997 * 109.47725 * 299.99977 * 1 2 3 25 25 H 1.09001 * 109.47569 * 60.00243 * 1 2 3 26 26 H 1.09003 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.08989 * 109.47355 * 239.99978 * 2 1 3 28 28 H 1.09003 * 109.46941 * 185.15546 * 3 2 1 29 29 H 1.08998 * 109.47136 * 305.16080 * 3 2 1 30 30 H 1.09006 * 109.47206 * 65.16331 * 3 2 1 31 31 H 0.97001 * 120.00147 * 312.50430 * 6 4 2 32 32 H 1.07998 * 119.78790 * 359.97438 * 8 7 6 33 33 H 1.07995 * 119.83161 * 179.97438 * 9 8 7 34 34 H 1.07999 * 120.05299 * 180.02562 * 10 9 8 35 35 H 0.96999 * 120.00279 * 180.02562 * 15 14 12 36 36 H 1.07995 * 120.16142 * 0.27348 * 20 7 6 37 37 H 1.08992 * 115.54896 * 34.42073 * 21 4 2 38 38 H 1.08994 * 117.50076 * 359.97438 * 22 21 4 39 39 H 1.08994 * 117.49921 * 145.02550 * 22 21 4 40 40 H 1.09001 * 117.50338 * 214.98090 * 23 21 4 41 41 H 1.09008 * 117.49860 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6059 -0.2612 2.1370 6 7 3.5000 -0.6187 1.3105 7 6 4.1244 -0.2419 2.5019 8 6 3.4194 -0.2916 3.7027 9 6 4.0290 0.0792 4.8896 10 6 5.3393 0.5019 4.8957 11 6 6.0641 0.5573 3.6904 12 6 7.4105 0.9899 3.6892 13 1 7.7649 1.6543 4.4633 14 6 8.2834 0.5572 2.6849 15 7 7.9379 -0.4295 1.8983 16 14 9.9421 1.3884 2.4671 17 1 10.0910 2.4679 3.4760 18 1 11.0247 0.3883 2.6495 19 1 10.0295 1.9693 1.1033 20 6 5.4413 0.1799 2.4878 21 6 1.6343 -2.1952 1.1885 22 6 0.5866 -2.6815 2.1918 23 6 2.0523 -3.0916 2.3557 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1260 1.4440 -0.0923 29 1 1.6030 1.9824 -0.8401 30 1 1.7540 1.9290 0.9327 31 1 4.0332 -0.8124 0.5237 32 1 2.3910 -0.6214 3.7078 33 1 3.4735 0.0374 5.8148 34 1 5.8105 0.7896 5.8239 35 1 8.5432 -0.7297 1.2023 36 1 5.9873 0.2230 1.5571 37 1 1.6216 -2.6386 0.1929 38 1 0.1867 -1.9516 2.8955 39 1 -0.1151 -3.4452 1.8565 40 1 2.3142 -4.1250 2.1282 41 1 2.6167 -2.6314 3.1668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705379714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:13 Heat of formation + Delta-G solvation = 16.289262 kcal Electronic energy + Delta-G solvation = -19557.467298 eV Core-core repulsion = 16822.382077 eV Total energy + Delta-G solvation = -2735.085221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33318 -38.69732 -36.20035 -35.54948 -34.22465 -31.30752 -29.82388 -28.03861 -27.12272 -26.38860 -23.19307 -22.98697 -21.99664 -21.59719 -20.74184 -19.07418 -17.50798 -16.89170 -16.45191 -16.41673 -16.16500 -15.55447 -14.85857 -14.64054 -14.52279 -14.10589 -13.82344 -13.52328 -13.43111 -13.11700 -12.91377 -12.74042 -12.64825 -12.40702 -12.31428 -12.11998 -12.03761 -11.82741 -11.51951 -11.49228 -11.29329 -11.14922 -10.98352 -10.84214 -10.32584 -9.18806 -8.57032 -7.82961 -6.31434 1.09523 1.36051 1.38374 1.52871 1.57589 2.23953 2.67552 2.85435 3.27019 3.64403 3.85985 4.03877 4.14460 4.23057 4.26182 4.38231 4.51107 4.55078 4.76729 4.82845 4.84806 4.84862 4.86761 5.00891 5.04232 5.10744 5.14861 5.21985 5.27999 5.33603 5.35774 5.39945 5.46453 5.49038 5.54241 5.67174 6.01557 6.13803 6.26232 6.31838 6.62857 6.99481 7.09327 7.13558 7.31863 8.42435 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.005561 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.944920 B = 5034.167711 C = 5422.373842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 C -0.138 4.138 4 C 0.191 3.809 5 H 0.070 0.930 6 N -0.743 5.743 7 C 0.229 3.771 8 C -0.291 4.291 9 C -0.068 4.068 10 C -0.284 4.284 11 C 0.104 3.896 12 C -0.503 4.503 13 H 0.068 0.932 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.980 3.020 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.265 1.265 20 C -0.251 4.251 21 C -0.163 4.163 22 C -0.156 4.156 23 C -0.192 4.192 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.388 0.612 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.283 0.717 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.436 -1.995 -5.772 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 C -0.196 4.196 4 C 0.086 3.914 5 H 0.088 0.912 6 N -0.373 5.373 7 C 0.128 3.872 8 C -0.314 4.314 9 C -0.087 4.087 10 C -0.305 4.305 11 C 0.102 3.898 12 C -0.533 4.533 13 H 0.086 0.914 14 C -0.179 4.179 15 N -0.454 5.454 16 Si 0.801 3.199 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.190 1.190 20 C -0.275 4.275 21 C -0.182 4.182 22 C -0.193 4.193 23 C -0.229 4.229 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.222 0.778 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.544 -2.127 -5.901 14.025 hybrid contribution 1.421 0.136 -0.122 1.433 sum -11.123 -1.991 -6.023 12.805 Atomic orbital electron populations 1.21736 0.92940 1.02653 1.02069 1.21389 0.97195 0.95604 0.97323 1.21715 1.00337 0.96327 1.01197 1.20510 0.80180 0.92399 0.98326 0.91191 1.44444 1.05171 1.77515 1.10132 1.17671 0.91253 0.91811 0.86495 1.20239 1.00154 1.19377 0.91617 1.20637 0.94066 0.96895 0.97096 1.21012 0.96781 1.16140 0.96520 1.17741 0.92840 0.88040 0.91221 1.19817 0.95356 1.27562 1.10573 0.91364 1.26673 1.03890 0.93717 0.93614 1.69917 1.38142 1.21280 1.16050 0.85199 0.76587 0.78995 0.79103 1.18465 1.19157 1.18951 1.20782 0.94002 1.14440 0.98255 1.22791 1.04454 0.95605 0.95384 1.23009 0.91351 1.03383 1.01548 1.22903 0.98801 0.99830 1.01397 0.92960 0.91577 0.91357 0.90821 0.94468 0.91483 0.94120 0.77834 0.87227 0.86787 0.89518 0.90683 0.88051 0.87268 0.88960 0.86971 0.89099 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.01 71.98 0.65 -1.86 16 2 C -0.10 -2.27 2.65 -10.79 -0.03 -2.30 16 3 C -0.14 -3.71 8.89 71.98 0.64 -3.07 16 4 C 0.19 5.50 1.74 45.00 0.08 5.58 16 5 H 0.07 2.21 5.80 -2.39 -0.01 2.20 16 6 N -0.74 -27.31 4.08 -319.12 -1.30 -28.61 16 7 C 0.23 10.51 6.59 38.16 0.25 10.76 16 8 C -0.29 -12.82 7.90 22.59 0.18 -12.64 16 9 C -0.07 -3.14 10.02 22.20 0.22 -2.91 16 10 C -0.28 -14.85 9.79 22.75 0.22 -14.63 16 11 C 0.10 5.94 5.57 -21.31 -0.12 5.82 16 12 C -0.50 -28.61 9.07 23.46 0.21 -28.39 16 13 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 14 C 0.03 1.82 5.23 85.25 0.45 2.27 16 15 N -0.83 -44.71 10.77 21.82 0.24 -44.48 16 16 Si 0.98 40.01 29.58 68.60 2.03 42.04 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 18 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 19 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 20 C -0.25 -13.52 8.53 22.85 0.19 -13.32 16 21 C -0.16 -4.09 4.34 -10.79 -0.05 -4.14 16 22 C -0.16 -3.39 10.18 30.62 0.31 -3.08 16 23 C -0.19 -5.44 10.09 30.62 0.31 -5.13 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.13 7.38 -2.39 -0.02 1.11 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.16 7.66 -2.39 -0.02 1.15 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.39 14.27 8.86 -92.71 -0.82 13.45 16 32 H 0.11 4.26 5.60 -2.91 -0.02 4.25 16 33 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.09 4.37 8.06 -2.91 -0.02 4.34 16 35 H 0.28 13.83 8.30 -92.71 -0.77 13.06 16 36 H 0.10 5.75 6.09 -2.91 -0.02 5.74 16 37 H 0.11 2.47 8.11 -2.39 -0.02 2.46 16 38 H 0.09 2.01 8.05 -2.39 -0.02 1.99 16 39 H 0.11 1.92 8.14 -2.39 -0.02 1.91 16 40 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.08 2.69 6.07 -2.38 -0.01 2.67 16 Total: -1.00 -60.71 328.25 4.67 -56.04 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: 0.19 Total: 42.06 kcal Atomic # 6 Polarization: -70.57 SS G_CDS: 3.52 Total: -67.05 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -1.07 Total: -73.09 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -60.71 4.67 -56.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705379714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.325 kcal (2) G-P(sol) polarization free energy of solvation -60.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds