Wall clock time and date at job start Mon Mar 30 2020 07:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47115 * 2 1 4 4 C 1.52994 * 109.47348 * 239.99405 * 2 1 3 5 5 H 1.08995 * 109.47390 * 180.02562 * 4 2 1 6 6 N 1.46501 * 109.47549 * 300.00407 * 4 2 1 7 7 C 1.39680 * 120.00150 * 265.82921 * 6 4 2 8 8 C 1.39334 * 119.94852 * 359.72610 * 7 6 4 9 9 C 1.38485 * 120.42308 * 179.72317 * 8 7 6 10 10 C 1.37687 * 120.32437 * 0.54829 * 9 8 7 11 11 C 1.40751 * 119.89144 * 359.72619 * 10 9 8 12 12 C 1.41409 * 120.20543 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00408 * 25.48293 * 12 11 10 14 14 C 1.39934 * 119.99785 * 205.47880 * 12 11 10 15 15 N 1.30827 * 119.99978 * 13.85392 * 14 12 11 16 16 Si 1.86799 * 119.99867 * 193.84910 * 14 12 11 17 17 H 1.48506 * 109.46792 * 90.00622 * 16 14 12 18 18 H 1.48506 * 109.47037 * 210.00058 * 16 14 12 19 19 H 1.48497 * 109.47479 * 330.00240 * 16 14 12 20 20 C 1.38277 * 119.95395 * 179.97438 * 7 6 4 21 21 C 1.53001 * 109.47088 * 60.00109 * 4 2 1 22 22 C 1.52996 * 117.50219 * 242.64698 * 21 4 2 23 23 C 1.53002 * 117.50408 * 173.98443 * 21 4 2 24 24 H 1.08999 * 109.46810 * 60.00410 * 1 2 3 25 25 H 1.09001 * 109.47251 * 300.00419 * 1 2 3 26 26 H 1.08997 * 109.47271 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46810 * 119.99590 * 2 1 3 28 28 H 1.09004 * 109.47349 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46947 * 299.99507 * 3 2 1 30 30 H 1.09001 * 109.47403 * 59.99675 * 3 2 1 31 31 H 0.97003 * 120.00144 * 85.82007 * 6 4 2 32 32 H 1.08002 * 119.79366 * 359.97438 * 8 7 6 33 33 H 1.08002 * 119.83883 * 180.27898 * 9 8 7 34 34 H 1.07999 * 120.05482 * 179.74695 * 10 9 8 35 35 H 0.97003 * 119.99733 * 179.97438 * 15 14 12 36 36 H 1.07992 * 120.16024 * 359.97438 * 20 7 6 37 37 H 1.09009 * 115.54998 * 28.31391 * 21 4 2 38 38 H 1.09005 * 117.49928 * 359.97438 * 22 21 4 39 39 H 1.09007 * 117.49997 * 145.01805 * 22 21 4 40 40 H 1.08995 * 117.50495 * 214.98007 * 23 21 4 41 41 H 1.09007 * 117.49288 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 1 3.1300 -0.7217 -1.2489 6 7 1.5517 -2.1026 -1.2491 7 6 2.3454 -3.1240 -0.7220 8 6 3.6038 -2.8289 -0.2016 9 6 4.3965 -3.8330 0.3286 10 6 3.9538 -5.1367 0.3370 11 6 2.6872 -5.4509 -0.1903 12 6 2.2258 -6.7876 -0.1846 13 1 2.6029 -7.4860 0.5478 14 6 1.2803 -7.2054 -1.1278 15 7 1.0238 -6.4594 -2.1715 16 14 0.3847 -8.8283 -0.8967 17 1 -0.8592 -8.6006 -0.1181 18 1 0.0403 -9.3970 -2.2246 19 1 1.2608 -9.7773 -0.1639 20 6 1.8833 -4.4272 -0.7220 21 6 1.5301 -0.0002 -2.4984 22 6 0.6044 -0.7788 -3.4353 23 6 2.0470 -0.4849 -3.8545 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.6771 -2.3078 -1.6151 32 1 3.9617 -1.8099 -0.2081 33 1 5.3685 -3.5929 0.7336 34 1 4.5773 -5.9170 0.7479 35 1 0.3687 -6.7493 -2.8255 36 1 0.9096 -4.6577 -1.1284 37 1 1.3461 1.0680 -2.3825 38 1 0.3590 -1.8051 -3.1618 39 1 -0.1883 -0.2229 -3.9360 40 1 2.2027 0.2642 -4.6308 41 1 2.7507 -1.3173 -3.8565 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705379715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:16 Heat of formation + Delta-G solvation = 36.890429 kcal Electronic energy + Delta-G solvation = -19580.795671 eV Core-core repulsion = 16846.603783 eV Total energy + Delta-G solvation = -2734.191887 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.16264 -37.13768 -34.81091 -33.77303 -32.60297 -29.38226 -28.08567 -27.06300 -25.38540 -24.97821 -22.25630 -21.67304 -20.85851 -20.12665 -18.43568 -17.07576 -16.24950 -15.69219 -15.18587 -14.83676 -14.33390 -14.06527 -13.70367 -13.14973 -12.91929 -12.67669 -12.28600 -12.08393 -11.98327 -11.78643 -11.55738 -11.27070 -11.21987 -11.05467 -10.93781 -10.76770 -10.52013 -10.37408 -10.29589 -10.00870 -9.76870 -9.55280 -9.36974 -9.15967 -8.68706 -7.24178 -6.65632 -6.08683 -4.28225 2.90370 3.12161 3.15917 3.27777 3.37787 3.94867 4.01177 4.40858 4.77526 4.82503 5.02875 5.19585 5.29062 5.32585 5.37635 5.54840 5.78425 5.83768 5.87035 5.91014 5.96187 6.00254 6.12063 6.19439 6.29849 6.34680 6.38184 6.43832 6.51474 6.61287 6.69117 6.93899 7.17118 7.18986 7.45729 7.50286 7.87623 8.00954 8.16767 8.23670 8.54961 8.77835 8.90245 9.06478 9.17321 10.31876 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022265 B = 0.005741 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.253883 B = 4876.033464 C = 5372.992630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.192 3.808 5 H 0.082 0.918 6 N -0.751 5.751 7 C 0.216 3.784 8 C -0.298 4.298 9 C -0.068 4.068 10 C -0.257 4.257 11 C 0.137 3.863 12 C -0.464 4.464 13 H 0.074 0.926 14 C 0.076 3.924 15 N -0.797 5.797 16 Si 0.906 3.094 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.229 4.229 21 C -0.161 4.161 22 C -0.179 4.179 23 C -0.175 4.175 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.389 0.611 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.276 0.724 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 11.634 -0.922 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.203 4.203 4 C 0.085 3.915 5 H 0.100 0.900 6 N -0.385 5.385 7 C 0.118 3.882 8 C -0.321 4.321 9 C -0.087 4.087 10 C -0.278 4.278 11 C 0.134 3.866 12 C -0.494 4.494 13 H 0.093 0.907 14 C -0.141 4.141 15 N -0.424 5.424 16 Si 0.731 3.269 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.188 1.188 20 C -0.253 4.253 21 C -0.179 4.179 22 C -0.217 4.217 23 C -0.212 4.212 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.225 0.775 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.135 11.754 -1.120 11.999 hybrid contribution -0.731 -0.804 -0.170 1.100 sum -2.866 10.950 -1.290 11.392 Atomic orbital electron populations 1.21734 0.95458 1.01897 1.00611 1.21561 0.96217 0.95508 0.99590 1.21875 1.00902 0.96339 1.01220 1.20170 0.98425 0.82037 0.90865 0.90022 1.44705 1.20093 1.03859 1.69857 1.17672 0.90105 0.87797 0.92650 1.19935 0.97106 0.97446 1.17601 1.20283 0.96882 0.93363 0.98138 1.20869 0.97948 0.94896 1.14086 1.17335 0.89191 0.92685 0.87385 1.19563 1.20275 0.95966 1.13596 0.90736 1.25856 0.95604 0.98672 0.93921 1.69850 1.27552 1.37270 1.07693 0.86361 0.80225 0.82003 0.78340 1.19490 1.20476 1.18753 1.20793 1.02118 0.89235 1.13118 1.22767 1.04746 0.99155 0.91281 1.22943 0.93308 1.01908 1.03492 1.22914 0.97568 1.03427 0.97335 0.93021 0.93664 0.92389 0.90783 0.92829 0.92711 0.93092 0.77468 0.89526 0.89775 0.89521 0.91347 0.86288 0.87420 0.88079 0.89486 0.89478 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.79 37.16 0.33 -1.50 16 2 C -0.11 -1.50 2.94 -90.63 -0.27 -1.77 16 3 C -0.15 -1.64 8.95 37.15 0.33 -1.31 16 4 C 0.19 2.94 2.09 -67.93 -0.14 2.79 16 5 H 0.08 1.37 5.95 -51.93 -0.31 1.06 16 6 N -0.75 -13.91 4.04 -52.22 -0.21 -14.12 16 7 C 0.22 4.97 6.64 -83.86 -0.56 4.41 16 8 C -0.30 -6.74 9.23 -39.08 -0.36 -7.10 16 9 C -0.07 -1.58 10.02 -39.69 -0.40 -1.98 16 10 C -0.26 -6.57 9.79 -38.83 -0.38 -6.95 16 11 C 0.14 3.75 5.58 -106.85 -0.60 3.16 16 12 C -0.46 -12.64 9.07 -37.74 -0.34 -12.98 16 13 H 0.07 1.97 7.88 -52.49 -0.41 1.55 16 14 C 0.08 1.95 5.22 -17.34 -0.09 1.86 16 15 N -0.80 -20.91 10.79 55.55 0.60 -20.31 16 16 Si 0.91 19.15 29.58 -169.99 -5.03 14.12 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 20 C -0.23 -5.96 8.52 -38.68 -0.33 -6.29 16 21 C -0.16 -2.10 4.26 -90.62 -0.39 -2.48 16 22 C -0.18 -2.38 9.70 -26.70 -0.26 -2.64 16 23 C -0.18 -2.36 10.24 -26.69 -0.27 -2.63 16 24 H 0.05 0.62 7.19 -51.93 -0.37 0.24 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.85 7.47 -51.93 -0.39 0.46 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.56 6.14 -51.93 -0.32 0.24 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.39 7.07 6.15 -40.82 -0.25 6.82 16 32 H 0.09 1.77 6.02 -52.49 -0.32 1.46 16 33 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 36 H 0.12 3.22 6.08 -52.49 -0.32 2.90 16 37 H 0.11 1.23 6.04 -51.92 -0.31 0.92 16 38 H 0.10 1.53 5.88 -51.93 -0.31 1.23 16 39 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 322.95 15.07 4.87 4.87 Total: -1.00 -27.29 322.95 -9.74 -37.03 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -6.25 Total: 13.81 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: -3.72 Total: -35.40 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.39 Total: -34.43 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.29 -9.74 -37.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705379715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.920 kcal (2) G-P(sol) polarization free energy of solvation -27.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds