Wall clock time and date at job start Mon Mar 30 2020 07:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47499 * 2 1 4 4 H 1.09003 * 109.46730 * 54.99938 * 3 2 1 5 5 C 1.50694 * 109.47147 * 175.00104 * 3 2 1 6 6 H 1.08005 * 119.99889 * 120.00449 * 5 3 2 7 7 C 1.37878 * 120.00190 * 300.00311 * 5 3 2 8 8 N 1.31518 * 119.99992 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99922 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47390 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47181 * 119.99831 * 9 7 5 12 12 H 1.48501 * 109.46943 * 239.99707 * 9 7 5 13 13 N 1.46502 * 109.46936 * 295.00692 * 3 2 1 14 14 C 1.39669 * 120.00681 * 84.99875 * 13 3 2 15 15 C 1.38905 * 120.07711 * 179.97438 * 14 13 3 16 16 C 1.38102 * 119.92398 * 179.72013 * 15 14 13 17 17 C 1.38284 * 120.07730 * 0.28542 * 16 15 14 18 18 C 1.50702 * 119.92910 * 179.97438 * 17 16 15 19 19 C 1.53784 * 113.61288 * 217.49608 * 18 17 16 20 20 C 1.53786 * 87.07801 * 220.01567 * 19 18 17 21 21 C 1.53775 * 87.08226 * 25.43194 * 20 19 18 22 22 C 1.38288 * 120.14784 * 0.02562 * 17 16 15 23 23 C 1.38104 * 120.07459 * 0.02562 * 22 17 16 24 24 H 1.08997 * 109.47581 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47096 * 300.00161 * 1 2 3 26 26 H 1.08998 * 109.47156 * 59.99362 * 1 2 3 27 27 H 1.08999 * 109.46727 * 240.00236 * 2 1 3 28 28 H 1.08998 * 109.47156 * 120.00638 * 2 1 3 29 29 H 0.96997 * 119.99892 * 180.02562 * 8 7 5 30 30 H 0.97008 * 119.99236 * 264.99387 * 13 3 2 31 31 H 1.08002 * 120.04044 * 0.02562 * 15 14 13 32 32 H 1.08000 * 119.96256 * 180.29943 * 16 15 14 33 33 H 1.08997 * 112.84577 * 348.80019 * 18 17 16 34 34 H 1.08997 * 113.61396 * 334.56569 * 19 18 17 35 35 H 1.09003 * 113.61204 * 105.47107 * 19 18 17 36 36 H 1.08999 * 113.61413 * 270.88207 * 20 19 18 37 37 H 1.09003 * 113.61733 * 139.98327 * 20 19 18 38 38 H 1.09003 * 113.61524 * 220.02199 * 21 20 19 39 39 H 1.09001 * 113.69412 * 89.12807 * 21 20 19 40 40 H 1.08007 * 119.96217 * 179.97438 * 22 17 16 41 41 H 1.07998 * 120.03659 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3372 2.1733 9 14 6.0050 0.8810 1.3816 10 1 6.5988 1.5460 0.1940 11 1 6.3991 1.6164 2.6100 12 1 6.4970 -0.5178 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.3909 2.6851 -1.3711 15 6 0.0220 3.3070 -2.5571 16 6 -1.2282 3.8819 -2.6736 17 6 -2.1103 3.8441 -1.6093 18 6 -3.4735 4.4731 -1.7399 19 6 -3.9559 5.1701 -0.4567 20 6 -5.3489 4.5944 -0.7616 21 6 -4.6314 3.4806 -1.5422 22 6 -1.7438 3.2314 -0.4250 23 6 -0.4947 2.6555 -0.3013 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8293 -0.0606 2.9502 30 1 2.2720 2.1232 -1.9978 31 1 0.7103 3.3366 -3.3889 32 1 -1.5175 4.3614 -3.5971 33 1 -3.5725 5.0866 -2.6353 34 1 -3.5074 4.7698 0.4525 35 1 -3.9122 6.2580 -0.5080 36 1 -5.9614 5.2422 -1.3888 37 1 -5.8770 4.2375 0.1226 38 1 -5.1331 3.2046 -2.4697 39 1 -4.3673 2.6176 -0.9309 40 1 -2.4350 3.2040 0.4046 41 1 -0.2090 2.1775 0.6240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709667826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:52 Heat of formation + Delta-G solvation = 35.247819 kcal Electronic energy + Delta-G solvation = -19258.189704 eV Core-core repulsion = 16523.926588 eV Total energy + Delta-G solvation = -2734.263116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.67734 -38.06031 -35.60657 -32.73022 -31.33538 -30.09335 -29.15216 -26.63207 -25.49862 -24.30966 -22.89139 -22.48458 -21.01470 -19.25096 -18.98605 -17.31505 -16.21084 -15.57771 -15.31279 -14.98202 -14.24650 -14.06325 -13.69097 -13.18213 -13.03007 -12.71504 -12.57688 -12.39886 -12.30298 -11.77864 -11.62721 -11.37119 -11.30616 -10.95622 -10.88094 -10.65217 -10.42267 -10.33644 -10.15201 -10.08184 -9.95734 -9.62133 -9.15927 -8.89529 -8.45180 -8.25176 -6.38113 -6.16963 -4.25159 2.06899 2.24312 3.21027 3.29405 3.32661 4.25678 4.42434 4.62673 4.75674 4.82946 4.84567 5.14624 5.21344 5.44775 5.47950 5.60728 5.72292 5.79163 5.87033 5.91933 6.00274 6.03551 6.15869 6.23487 6.29553 6.38621 6.45532 6.54431 6.59059 6.63403 6.92589 6.98261 7.02650 7.11926 7.23848 7.29867 7.44944 7.60002 7.70337 7.84724 8.09512 8.39823 8.73407 8.92886 9.42032 10.88191 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.036828 B = 0.004340 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.106642 B = 6449.682184 C = 6647.128743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.273 3.727 4 H 0.040 0.960 5 C -0.530 4.530 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.725 5.725 14 C 0.236 3.764 15 C -0.221 4.221 16 C -0.069 4.069 17 C -0.160 4.160 18 C -0.056 4.056 19 C -0.137 4.137 20 C -0.146 4.146 21 C -0.134 4.134 22 C -0.070 4.070 23 C -0.198 4.198 24 H 0.027 0.973 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.033 0.967 28 H 0.098 0.902 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.254 5.539 -5.863 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.170 3.830 4 H 0.057 0.943 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.347 5.347 14 C 0.127 3.873 15 C -0.244 4.244 16 C -0.088 4.088 17 C -0.163 4.163 18 C -0.074 4.074 19 C -0.174 4.174 20 C -0.183 4.183 21 C -0.171 4.171 22 C -0.089 4.089 23 C -0.221 4.221 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.128 0.872 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.135 5.321 -5.466 14.333 hybrid contribution 1.297 -0.109 -0.172 1.313 sum -10.838 5.213 -5.638 13.282 Atomic orbital electron populations 1.22192 0.98956 0.99063 1.00619 1.22018 0.92246 1.00401 1.02466 1.18729 0.94427 0.88736 0.81127 0.94265 1.21274 0.90904 1.38489 1.06139 0.92126 1.24874 0.98634 0.94773 0.95398 1.69879 1.35052 1.37982 1.09400 0.86410 0.84912 0.77782 0.78130 1.19769 1.20850 1.20871 1.45545 1.12253 1.59091 1.17812 1.18023 0.86440 0.89899 0.92980 1.20469 0.98355 1.08084 0.97505 1.20536 0.92976 0.98028 0.97261 1.19172 0.95859 1.06093 0.95127 1.21241 0.91570 0.96653 0.97917 1.23055 0.95968 0.99812 0.98554 1.22842 0.96590 0.98604 1.00261 1.23007 0.96743 0.97185 1.00164 1.20598 0.95478 0.96411 0.96438 1.21044 0.94612 1.06765 0.99629 0.95339 0.93459 0.93186 0.94790 0.88346 0.92640 0.77881 0.87269 0.87530 0.89643 0.89746 0.91925 0.90641 0.91807 0.92014 0.89961 0.87247 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.23 37.16 0.31 -2.75 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.55 2.20 -69.08 -0.15 6.40 16 4 H 0.04 1.04 6.47 -51.93 -0.34 0.70 16 5 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -24.09 11.30 55.43 0.63 -23.47 16 9 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.73 -15.13 5.18 -53.29 -0.28 -15.41 16 14 C 0.24 4.55 5.47 -83.79 -0.46 4.09 16 15 C -0.22 -3.77 9.90 -39.38 -0.39 -4.16 16 16 C -0.07 -1.07 9.70 -39.61 -0.38 -1.45 16 17 C -0.16 -2.41 5.29 -104.59 -0.55 -2.96 16 18 C -0.06 -0.68 3.98 -90.96 -0.36 -1.04 16 19 C -0.14 -1.52 7.45 -25.91 -0.19 -1.71 16 20 C -0.15 -1.42 8.08 -25.92 -0.21 -1.63 16 21 C -0.13 -1.48 7.55 -25.92 -0.20 -1.68 16 22 C -0.07 -1.15 8.60 -39.61 -0.34 -1.49 16 23 C -0.20 -3.73 6.73 -39.38 -0.26 -3.99 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.94 6.36 -51.93 -0.33 0.61 16 26 H 0.05 1.00 5.40 -51.93 -0.28 0.71 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 30 H 0.39 7.65 8.55 -40.82 -0.35 7.30 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.11 1.39 8.05 -52.49 -0.42 0.97 16 33 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 34 H 0.08 0.99 6.30 -51.93 -0.33 0.66 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.98 7.72 -51.93 -0.40 0.58 16 40 H 0.11 1.59 6.65 -52.48 -0.35 1.24 16 41 H 0.13 2.67 4.04 -52.49 -0.21 2.46 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -26.43 316.52 -9.88 -36.31 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -6.24 Total: 10.41 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -3.74 Total: -28.13 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.35 Total: -38.88 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.43 -9.88 -36.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709667826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.555 kcal (2) G-P(sol) polarization free energy of solvation -26.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds