Wall clock time and date at job start Mon Mar 30 2020 07:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47499 * 2 1 4 4 H 1.09003 * 109.46730 * 54.99938 * 3 2 1 5 5 C 1.50694 * 109.47147 * 175.00104 * 3 2 1 6 6 H 1.08005 * 119.99889 * 120.00449 * 5 3 2 7 7 C 1.37878 * 120.00190 * 300.00311 * 5 3 2 8 8 N 1.31518 * 119.99992 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99922 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47390 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47181 * 119.99831 * 9 7 5 12 12 H 1.48501 * 109.46943 * 239.99707 * 9 7 5 13 13 N 1.46502 * 109.46936 * 295.00692 * 3 2 1 14 14 C 1.39669 * 120.00681 * 84.99875 * 13 3 2 15 15 C 1.38905 * 120.07711 * 179.97438 * 14 13 3 16 16 C 1.38102 * 119.92398 * 179.72013 * 15 14 13 17 17 C 1.38284 * 120.07730 * 0.28542 * 16 15 14 18 18 C 1.50702 * 119.92910 * 179.97438 * 17 16 15 19 19 C 1.53784 * 113.61288 * 217.49608 * 18 17 16 20 20 C 1.53786 * 87.07801 * 220.01567 * 19 18 17 21 21 C 1.53775 * 87.08226 * 25.43194 * 20 19 18 22 22 C 1.38288 * 120.14784 * 0.02562 * 17 16 15 23 23 C 1.38104 * 120.07459 * 0.02562 * 22 17 16 24 24 H 1.08997 * 109.47581 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47096 * 300.00161 * 1 2 3 26 26 H 1.08998 * 109.47156 * 59.99362 * 1 2 3 27 27 H 1.08999 * 109.46727 * 240.00236 * 2 1 3 28 28 H 1.08998 * 109.47156 * 120.00638 * 2 1 3 29 29 H 0.96997 * 119.99892 * 180.02562 * 8 7 5 30 30 H 0.97008 * 119.99236 * 264.99387 * 13 3 2 31 31 H 1.08002 * 120.04044 * 0.02562 * 15 14 13 32 32 H 1.08000 * 119.96256 * 180.29943 * 16 15 14 33 33 H 1.08997 * 112.84577 * 348.80019 * 18 17 16 34 34 H 1.08997 * 113.61396 * 334.56569 * 19 18 17 35 35 H 1.09003 * 113.61204 * 105.47107 * 19 18 17 36 36 H 1.08999 * 113.61413 * 270.88207 * 20 19 18 37 37 H 1.09003 * 113.61733 * 139.98327 * 20 19 18 38 38 H 1.09003 * 113.61524 * 220.02199 * 21 20 19 39 39 H 1.09001 * 113.69412 * 89.12807 * 21 20 19 40 40 H 1.08007 * 119.96217 * 179.97438 * 22 17 16 41 41 H 1.07998 * 120.03659 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3372 2.1733 9 14 6.0050 0.8810 1.3816 10 1 6.5988 1.5460 0.1940 11 1 6.3991 1.6164 2.6100 12 1 6.4970 -0.5178 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.3909 2.6851 -1.3711 15 6 0.0220 3.3070 -2.5571 16 6 -1.2282 3.8819 -2.6736 17 6 -2.1103 3.8441 -1.6093 18 6 -3.4735 4.4731 -1.7399 19 6 -3.9559 5.1701 -0.4567 20 6 -5.3489 4.5944 -0.7616 21 6 -4.6314 3.4806 -1.5422 22 6 -1.7438 3.2314 -0.4250 23 6 -0.4947 2.6555 -0.3013 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8293 -0.0606 2.9502 30 1 2.2720 2.1232 -1.9978 31 1 0.7103 3.3366 -3.3889 32 1 -1.5175 4.3614 -3.5971 33 1 -3.5725 5.0866 -2.6353 34 1 -3.5074 4.7698 0.4525 35 1 -3.9122 6.2580 -0.5080 36 1 -5.9614 5.2422 -1.3888 37 1 -5.8770 4.2375 0.1226 38 1 -5.1331 3.2046 -2.4697 39 1 -4.3673 2.6176 -0.9309 40 1 -2.4350 3.2040 0.4046 41 1 -0.2090 2.1775 0.6240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709667826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:51 Heat of formation + Delta-G solvation = 23.339397 kcal Electronic energy + Delta-G solvation = -19258.706092 eV Core-core repulsion = 16523.926588 eV Total energy + Delta-G solvation = -2734.779504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.88370 -39.29095 -37.16790 -34.53188 -33.01583 -31.49692 -30.62100 -28.33035 -26.36065 -25.62277 -24.58972 -23.89040 -22.37912 -20.91013 -19.96105 -19.00609 -17.76968 -17.05180 -16.70773 -16.29027 -15.81101 -15.41313 -15.25388 -14.64900 -14.50393 -13.98001 -13.88721 -13.71180 -13.51570 -13.21756 -13.16829 -12.86120 -12.81422 -12.62071 -12.52799 -12.14644 -11.95359 -11.82306 -11.48852 -11.30618 -11.18011 -10.97147 -10.91006 -10.60652 -10.27347 -9.60043 -8.19496 -7.87346 -6.33403 0.72320 0.90832 1.39656 1.41795 1.52666 2.36753 3.01386 3.09471 3.13396 3.87575 3.93137 3.98893 4.18202 4.27621 4.28714 4.44436 4.50710 4.60230 4.69821 4.73779 4.81966 4.92782 4.97909 4.99903 5.01089 5.13141 5.17613 5.19466 5.28400 5.31352 5.40685 5.43360 5.54799 5.61666 5.68675 5.72011 5.77855 5.88215 6.04741 6.16189 6.29220 6.58954 6.90749 7.26672 7.39885 8.86421 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.036828 B = 0.004340 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.106642 B = 6449.682184 C = 6647.128743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.284 3.716 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.058 0.942 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.963 3.037 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.278 1.278 13 N -0.733 5.733 14 C 0.208 3.792 15 C -0.219 4.219 16 C -0.071 4.071 17 C -0.149 4.149 18 C -0.060 4.060 19 C -0.140 4.140 20 C -0.134 4.134 21 C -0.134 4.134 22 C -0.074 4.074 23 C -0.215 4.215 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.265 0.735 30 H 0.391 0.609 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.123 0.877 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.677 6.665 -7.299 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.180 3.820 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.077 0.923 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.789 3.211 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.358 5.358 14 C 0.102 3.898 15 C -0.242 4.242 16 C -0.089 4.089 17 C -0.151 4.151 18 C -0.079 4.079 19 C -0.178 4.178 20 C -0.172 4.172 21 C -0.172 4.172 22 C -0.092 4.092 23 C -0.238 4.238 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.225 0.775 31 H 0.141 0.859 32 H 0.157 0.843 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.141 0.859 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.593 6.466 -6.921 16.568 hybrid contribution 1.614 -0.376 0.244 1.675 sum -11.979 6.090 -6.677 15.006 Atomic orbital electron populations 1.22023 0.96655 0.99975 1.00666 1.21847 0.94263 0.99615 1.00662 1.18329 0.93197 0.88861 0.81620 0.97555 1.21613 0.92261 1.38536 1.06296 0.92344 1.25650 1.02856 0.94436 0.95107 1.70004 1.36675 1.38494 1.09785 0.85426 0.79807 0.77832 0.78056 1.19266 1.20623 1.20385 1.45213 1.13338 1.60436 1.16772 1.18235 0.85966 0.91374 0.94232 1.20714 0.99378 1.07220 0.96928 1.20933 0.92109 0.97307 0.98574 1.19585 0.97173 1.04207 0.94140 1.21402 0.89876 0.97335 0.99242 1.23060 0.96895 1.00307 0.97489 1.22815 0.95955 0.97883 1.00498 1.22986 0.96488 0.96943 1.00768 1.20778 0.94678 0.96094 0.97688 1.20978 0.95918 1.07993 0.98868 0.93815 0.93770 0.92794 0.95347 0.91104 0.92571 0.77505 0.85851 0.84342 0.87897 0.90845 0.91064 0.88926 0.91241 0.90894 0.91201 0.85924 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 8.23 71.98 0.59 -5.03 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.24 2.20 44.24 0.10 14.34 16 4 H 0.01 0.38 6.47 -2.39 -0.02 0.36 16 5 C -0.55 -29.60 8.73 25.60 0.22 -29.38 16 6 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 7 C 0.02 1.06 5.29 84.65 0.45 1.51 16 8 N -0.91 -51.09 11.30 21.45 0.24 -50.84 16 9 Si 0.96 42.68 29.54 68.60 2.03 44.70 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 13 N -0.73 -31.47 5.18 -322.51 -1.67 -33.14 16 14 C 0.21 8.10 5.47 38.21 0.21 8.31 16 15 C -0.22 -7.19 9.90 22.40 0.22 -6.97 16 16 C -0.07 -1.99 9.70 22.25 0.22 -1.78 16 17 C -0.15 -4.15 5.29 -19.84 -0.10 -4.26 16 18 C -0.06 -1.28 3.98 -11.01 -0.04 -1.32 16 19 C -0.14 -2.74 7.45 31.12 0.23 -2.51 16 20 C -0.13 -2.18 8.08 31.12 0.25 -1.93 16 21 C -0.13 -2.59 7.55 31.12 0.23 -2.35 16 22 C -0.07 -2.36 8.60 22.25 0.19 -2.17 16 23 C -0.21 -8.27 6.73 22.40 0.15 -8.12 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.04 1.82 6.36 -2.39 -0.02 1.81 16 26 H 0.05 2.17 5.40 -2.39 -0.01 2.16 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 3.81 5.95 -2.39 -0.01 3.80 16 29 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.39 15.80 8.55 -92.70 -0.79 15.00 16 31 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.14 3.02 8.05 -2.91 -0.02 3.00 16 33 H 0.10 1.87 8.09 -2.39 -0.02 1.85 16 34 H 0.07 1.60 6.30 -2.39 -0.02 1.58 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.53 7.72 -2.39 -0.02 1.51 16 40 H 0.12 3.51 6.65 -2.91 -0.02 3.49 16 41 H 0.11 4.63 4.04 -2.91 -0.01 4.62 16 Total: -1.00 -57.61 316.52 3.91 -53.69 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.23 Total: 33.07 kcal Atomic # 6 Polarization: -50.58 SS G_CDS: 3.09 Total: -47.49 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.43 Total: -83.98 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -57.61 3.91 -53.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709667826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.033 kcal (2) G-P(sol) polarization free energy of solvation -57.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds