Wall clock time and date at job start Mon Mar 30 2020 06:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 115.55297 * 2 1 4 4 C 1.53080 * 117.51347 * 214.27179 * 2 1 3 5 5 C 1.53004 * 117.49683 * 145.66394 * 2 1 3 6 6 H 1.08997 * 117.49998 * 215.00832 * 5 2 1 7 7 C 1.53000 * 117.49839 * 0.02562 * 5 2 1 8 8 N 1.46497 * 109.47231 * 184.91216 * 7 5 2 9 9 C 1.46497 * 120.00160 * 89.99836 * 8 7 5 10 10 C 1.50694 * 109.47115 * 270.00206 * 9 8 7 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.39678 * 119.99876 * 269.99863 * 8 7 5 19 19 C 1.38911 * 120.07688 * 359.72733 * 18 8 7 20 20 C 1.38100 * 119.92791 * 179.77029 * 19 18 8 21 21 C 1.38292 * 120.07156 * 0.50160 * 20 19 18 22 22 C 1.38281 * 120.15092 * 359.74582 * 21 20 19 23 23 C 1.38105 * 120.07381 * 0.02562 * 22 21 20 24 24 H 1.08996 * 109.47314 * 274.33193 * 1 2 3 25 25 H 1.09003 * 109.46655 * 34.33232 * 1 2 3 26 26 H 1.08995 * 109.46994 * 154.33027 * 1 2 3 27 27 H 1.08998 * 109.47325 * 205.66660 * 3 2 1 28 28 H 1.09008 * 109.47053 * 325.66369 * 3 2 1 29 29 H 1.08998 * 109.47794 * 85.66448 * 3 2 1 30 30 H 1.08999 * 117.49037 * 145.03843 * 4 2 1 31 31 H 1.08998 * 117.51343 * 0.02562 * 4 2 1 32 32 H 1.09004 * 109.46887 * 64.91012 * 7 5 2 33 33 H 1.08995 * 109.47263 * 304.91223 * 7 5 2 34 34 H 1.09007 * 109.47078 * 149.99845 * 9 8 7 35 35 H 1.09003 * 109.46733 * 30.00568 * 9 8 7 36 36 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 37 37 H 1.08004 * 120.03160 * 359.97438 * 19 18 8 38 38 H 1.08005 * 119.96743 * 180.25378 * 20 19 18 39 39 H 1.08007 * 119.92156 * 179.76831 * 21 20 19 40 40 H 1.08001 * 119.96212 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.03623 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 6 2.2372 -1.1219 -0.7645 5 6 2.2365 -1.1207 0.7655 6 1 3.1713 -0.8746 1.2691 7 6 1.3588 -2.1559 1.4719 8 7 2.2058 -3.0713 2.2405 9 6 2.5398 -2.7648 3.6336 10 6 3.8092 -1.9540 3.6790 11 1 4.3168 -1.6934 2.7620 12 6 4.3234 -1.5457 4.8915 13 7 3.7057 -1.8634 6.0083 14 14 5.8974 -0.5412 4.9478 15 1 6.2359 -0.2304 6.3600 16 1 7.0030 -1.3186 4.3328 17 1 5.7040 0.7244 4.1956 18 6 2.6948 -4.2363 1.6451 19 6 2.3744 -4.5314 0.3261 20 6 2.8635 -5.6817 -0.2610 21 6 3.6630 -6.5447 0.4660 22 6 3.9797 -6.2567 1.7809 23 6 3.4978 -5.1057 2.3726 24 1 -0.3634 0.0776 1.0247 25 1 -0.3633 0.8487 -0.5796 26 1 -0.3633 -0.9262 -0.4451 27 1 3.1823 1.3086 -0.4451 28 1 1.5811 2.0742 -0.5797 29 1 2.2767 1.7417 1.0247 30 1 3.1724 -0.8762 -1.2675 31 1 1.6124 -1.8598 -1.2678 32 1 0.7938 -2.7201 0.7299 33 1 0.6683 -1.6481 2.1452 34 1 2.6820 -3.6937 4.1860 35 1 1.7279 -2.1944 4.0848 36 1 4.0677 -1.5765 6.8612 37 1 1.7462 -3.8601 -0.2407 38 1 2.6182 -5.9096 -1.2878 39 1 4.0411 -7.4456 0.0056 40 1 4.6046 -6.9326 2.3457 41 1 3.7458 -4.8811 3.3995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722881113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:27 Heat of formation + Delta-G solvation = 44.870769 kcal Electronic energy + Delta-G solvation = -19612.716491 eV Core-core repulsion = 16878.870657 eV Total energy + Delta-G solvation = -2733.845834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.16670 -37.99999 -35.29832 -32.66812 -30.45627 -29.61600 -28.84579 -27.74372 -27.05172 -24.98854 -22.85061 -21.73799 -20.71616 -19.65115 -18.39835 -16.95909 -16.41459 -15.17149 -14.98536 -14.50387 -14.24766 -14.11978 -13.69887 -13.57780 -12.93760 -12.86354 -12.67284 -12.33693 -12.14146 -12.06005 -11.83396 -11.59444 -11.27507 -11.16740 -11.00349 -10.90800 -10.70700 -10.66067 -10.26968 -9.98467 -9.63196 -9.38040 -9.24592 -8.83586 -8.48045 -8.23561 -6.47037 -6.00741 -4.14615 2.13790 2.35534 3.27935 3.32548 3.35748 3.93659 4.21466 4.41494 4.62489 4.99236 5.04354 5.18010 5.24113 5.31271 5.51726 5.57751 5.74335 5.79133 5.79754 5.89542 5.99647 6.03854 6.08213 6.09203 6.14711 6.19574 6.24519 6.32517 6.35545 6.46995 6.53471 6.67507 6.83614 7.03191 7.11676 7.21952 7.29361 7.38944 7.64921 7.83374 8.18298 8.30791 8.52884 8.93592 9.51535 10.97468 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.011018 B = 0.009633 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.613838 B = 2905.902694 C = 4756.977700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.135 4.135 3 C -0.112 4.112 4 C -0.175 4.175 5 C -0.145 4.145 6 H 0.119 0.881 7 C 0.162 3.838 8 N -0.609 5.609 9 C 0.251 3.749 10 C -0.526 4.526 11 H 0.060 0.940 12 C 0.062 3.938 13 N -0.895 5.895 14 Si 0.892 3.108 15 H -0.287 1.287 16 H -0.276 1.276 17 H -0.277 1.277 18 C 0.240 3.760 19 C -0.216 4.216 20 C -0.080 4.080 21 C -0.205 4.205 22 C -0.078 4.078 23 C -0.188 4.188 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.029 0.971 36 H 0.264 0.736 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 -0.570 -11.199 12.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.135 4.135 3 C -0.169 4.169 4 C -0.212 4.212 5 C -0.165 4.165 6 H 0.137 0.863 7 C 0.038 3.962 8 N -0.314 5.314 9 C 0.131 3.869 10 C -0.564 4.564 11 H 0.078 0.922 12 C -0.140 4.140 13 N -0.535 5.535 14 Si 0.720 3.280 15 H -0.212 1.212 16 H -0.202 1.202 17 H -0.203 1.203 18 C 0.134 3.866 19 C -0.239 4.239 20 C -0.099 4.099 21 C -0.226 4.226 22 C -0.097 4.097 23 C -0.210 4.210 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.682 -0.351 -10.853 11.825 hybrid contribution 1.087 0.678 0.101 1.285 sum -3.595 0.327 -10.753 11.342 Atomic orbital electron populations 1.21305 0.92570 1.01326 1.01754 1.21560 0.94460 0.91433 1.06077 1.21310 0.99553 0.94159 1.01887 1.23260 1.01717 1.00896 0.95283 1.23235 1.02322 0.98144 0.92780 0.86330 1.20770 0.91399 0.89618 0.94422 1.47115 1.51699 1.18971 1.13611 1.19273 0.95738 0.96459 0.75427 1.21539 1.08757 1.33596 0.92548 0.92226 1.24945 0.97329 0.96208 0.95537 1.69917 1.39690 1.46201 0.97641 0.86642 0.83763 0.80627 0.76943 1.21245 1.20175 1.20279 1.17906 0.91038 0.86354 0.91270 1.20589 1.08070 1.00437 0.94792 1.20669 0.96860 0.94050 0.98330 1.20648 1.05259 1.01158 0.95499 1.20810 0.98049 0.96143 0.94716 1.20916 1.02759 0.95821 1.01513 0.92156 0.92680 0.92708 0.92800 0.92767 0.92093 0.89549 0.89439 0.92077 0.91038 0.94747 0.95299 0.92672 0.86989 0.87555 0.87761 0.87209 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 8.86 37.16 0.33 -1.03 16 2 C -0.13 -1.90 2.70 -154.47 -0.42 -2.32 16 3 C -0.11 -1.49 9.85 37.15 0.37 -1.12 16 4 C -0.17 -2.51 9.25 -26.69 -0.25 -2.76 16 5 C -0.15 -2.48 5.73 -90.61 -0.52 -3.00 16 6 H 0.12 2.45 6.57 -51.93 -0.34 2.11 16 7 C 0.16 2.86 4.57 -4.04 -0.02 2.85 16 8 N -0.61 -12.75 2.59 -173.12 -0.45 -13.19 16 9 C 0.25 6.17 4.96 -5.20 -0.03 6.14 16 10 C -0.53 -14.01 9.03 -34.44 -0.31 -14.32 16 11 H 0.06 1.62 6.66 -52.49 -0.35 1.27 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.90 -25.48 13.29 55.43 0.74 -24.74 16 14 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 C 0.24 4.88 6.55 -83.78 -0.55 4.33 16 19 C -0.22 -3.83 9.21 -39.38 -0.36 -4.19 16 20 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 21 C -0.21 -3.34 10.04 -39.55 -0.40 -3.74 16 22 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 23 C -0.19 -3.85 9.21 -39.38 -0.36 -4.22 16 24 H 0.06 0.75 7.84 -51.93 -0.41 0.34 16 25 H 0.05 0.58 7.92 -51.93 -0.41 0.17 16 26 H 0.05 0.62 7.90 -51.93 -0.41 0.21 16 27 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16 28 H 0.05 0.61 7.92 -51.92 -0.41 0.20 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 31 H 0.09 1.16 7.43 -51.93 -0.39 0.78 16 32 H 0.06 0.97 5.92 -51.93 -0.31 0.66 16 33 H 0.07 1.26 7.52 -51.93 -0.39 0.87 16 34 H 0.03 0.90 6.20 -51.92 -0.32 0.58 16 35 H 0.03 0.75 7.89 -51.93 -0.41 0.34 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.11 1.81 5.39 -52.48 -0.28 1.53 16 38 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.10 1.43 8.06 -52.48 -0.42 1.01 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.13 2.93 6.14 -52.49 -0.32 2.61 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -27.76 330.11 -9.57 -37.33 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.41 Total: 4.65 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -3.41 Total: -25.26 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.29 Total: -37.94 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.76 -9.57 -37.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722881113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.204 kcal (2) G-P(sol) polarization free energy of solvation -27.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds