Wall clock time and date at job start Mon Mar 30 2020 06:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 115.55297 * 2 1 4 4 C 1.53080 * 117.51347 * 214.27179 * 2 1 3 5 5 C 1.53004 * 117.49683 * 145.66394 * 2 1 3 6 6 H 1.08997 * 117.49998 * 215.00832 * 5 2 1 7 7 C 1.53000 * 117.49839 * 0.02562 * 5 2 1 8 8 N 1.46497 * 109.47231 * 184.91216 * 7 5 2 9 9 C 1.46497 * 120.00160 * 89.99836 * 8 7 5 10 10 C 1.50694 * 109.47115 * 270.00206 * 9 8 7 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.39678 * 119.99876 * 269.99863 * 8 7 5 19 19 C 1.38911 * 120.07688 * 359.72733 * 18 8 7 20 20 C 1.38100 * 119.92791 * 179.77029 * 19 18 8 21 21 C 1.38292 * 120.07156 * 0.50160 * 20 19 18 22 22 C 1.38281 * 120.15092 * 359.74582 * 21 20 19 23 23 C 1.38105 * 120.07381 * 0.02562 * 22 21 20 24 24 H 1.08996 * 109.47314 * 274.33193 * 1 2 3 25 25 H 1.09003 * 109.46655 * 34.33232 * 1 2 3 26 26 H 1.08995 * 109.46994 * 154.33027 * 1 2 3 27 27 H 1.08998 * 109.47325 * 205.66660 * 3 2 1 28 28 H 1.09008 * 109.47053 * 325.66369 * 3 2 1 29 29 H 1.08998 * 109.47794 * 85.66448 * 3 2 1 30 30 H 1.08999 * 117.49037 * 145.03843 * 4 2 1 31 31 H 1.08998 * 117.51343 * 0.02562 * 4 2 1 32 32 H 1.09004 * 109.46887 * 64.91012 * 7 5 2 33 33 H 1.08995 * 109.47263 * 304.91223 * 7 5 2 34 34 H 1.09007 * 109.47078 * 149.99845 * 9 8 7 35 35 H 1.09003 * 109.46733 * 30.00568 * 9 8 7 36 36 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 37 37 H 1.08004 * 120.03160 * 359.97438 * 19 18 8 38 38 H 1.08005 * 119.96743 * 180.25378 * 20 19 18 39 39 H 1.08007 * 119.92156 * 179.76831 * 21 20 19 40 40 H 1.08001 * 119.96212 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.03623 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 6 2.2372 -1.1219 -0.7645 5 6 2.2365 -1.1207 0.7655 6 1 3.1713 -0.8746 1.2691 7 6 1.3588 -2.1559 1.4719 8 7 2.2058 -3.0713 2.2405 9 6 2.5398 -2.7648 3.6336 10 6 3.8092 -1.9540 3.6790 11 1 4.3168 -1.6934 2.7620 12 6 4.3234 -1.5457 4.8915 13 7 3.7057 -1.8634 6.0083 14 14 5.8974 -0.5412 4.9478 15 1 6.2359 -0.2304 6.3600 16 1 7.0030 -1.3186 4.3328 17 1 5.7040 0.7244 4.1956 18 6 2.6948 -4.2363 1.6451 19 6 2.3744 -4.5314 0.3261 20 6 2.8635 -5.6817 -0.2610 21 6 3.6630 -6.5447 0.4660 22 6 3.9797 -6.2567 1.7809 23 6 3.4978 -5.1057 2.3726 24 1 -0.3634 0.0776 1.0247 25 1 -0.3633 0.8487 -0.5796 26 1 -0.3633 -0.9262 -0.4451 27 1 3.1823 1.3086 -0.4451 28 1 1.5811 2.0742 -0.5797 29 1 2.2767 1.7417 1.0247 30 1 3.1724 -0.8762 -1.2675 31 1 1.6124 -1.8598 -1.2678 32 1 0.7938 -2.7201 0.7299 33 1 0.6683 -1.6481 2.1452 34 1 2.6820 -3.6937 4.1860 35 1 1.7279 -2.1944 4.0848 36 1 4.0677 -1.5765 6.8612 37 1 1.7462 -3.8601 -0.2407 38 1 2.6182 -5.9096 -1.2878 39 1 4.0411 -7.4456 0.0056 40 1 4.6046 -6.9326 2.3457 41 1 3.7458 -4.8811 3.3995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722881113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:27 Heat of formation + Delta-G solvation = 32.746960 kcal Electronic energy + Delta-G solvation = -19613.242218 eV Core-core repulsion = 16878.870657 eV Total energy + Delta-G solvation = -2734.371562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.57157 -39.26226 -36.86512 -34.69468 -31.89173 -30.94498 -30.36570 -29.09651 -28.32074 -26.58421 -24.63786 -23.12697 -22.11572 -21.09515 -19.63830 -18.47263 -18.42940 -16.87078 -16.47589 -15.93441 -15.79041 -15.41426 -15.05983 -14.72210 -14.54699 -14.34623 -14.17848 -13.75066 -13.51248 -13.30215 -13.15894 -13.09312 -12.87905 -12.68033 -12.56201 -12.45947 -12.22190 -12.04180 -11.98112 -11.61650 -11.36958 -10.70655 -10.63014 -10.56359 -10.25103 -9.64343 -8.35261 -7.81148 -6.33352 0.72548 0.94601 1.34429 1.35776 1.43766 2.32932 2.54432 2.92577 3.08052 3.20392 3.80867 3.91861 3.96048 4.15884 4.24532 4.29466 4.40212 4.56921 4.63502 4.69454 4.78825 4.80842 4.81377 4.88821 4.99335 5.01067 5.06405 5.10779 5.13727 5.14067 5.20739 5.30829 5.36534 5.41902 5.53041 5.63508 5.73835 5.79302 5.90984 6.10723 6.25604 6.54160 6.86728 6.98265 7.37234 8.85010 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.011018 B = 0.009633 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.613838 B = 2905.902694 C = 4756.977700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.123 4.123 3 C -0.114 4.114 4 C -0.157 4.157 5 C -0.174 4.174 6 H 0.074 0.926 7 C 0.167 3.833 8 N -0.620 5.620 9 C 0.270 3.730 10 C -0.528 4.528 11 H 0.049 0.951 12 C 0.013 3.987 13 N -0.927 5.927 14 Si 0.954 3.046 15 H -0.279 1.279 16 H -0.275 1.275 17 H -0.271 1.271 18 C 0.214 3.786 19 C -0.213 4.213 20 C -0.074 4.074 21 C -0.197 4.197 22 C -0.083 4.083 23 C -0.222 4.222 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.009 0.991 35 H 0.006 0.994 36 H 0.265 0.735 37 H 0.130 0.870 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.127 0.873 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 -0.894 -14.434 15.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.123 4.123 3 C -0.171 4.171 4 C -0.193 4.193 5 C -0.193 4.193 6 H 0.092 0.908 7 C 0.044 3.956 8 N -0.326 5.326 9 C 0.148 3.852 10 C -0.566 4.566 11 H 0.068 0.932 12 C -0.186 4.186 13 N -0.567 5.567 14 Si 0.779 3.221 15 H -0.204 1.204 16 H -0.200 1.200 17 H -0.196 1.196 18 C 0.110 3.890 19 C -0.236 4.236 20 C -0.093 4.093 21 C -0.217 4.217 22 C -0.101 4.101 23 C -0.245 4.245 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.027 0.973 35 H 0.024 0.976 36 H 0.074 0.926 37 H 0.148 0.852 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.145 0.855 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.894 -0.687 -14.120 14.960 hybrid contribution 1.157 0.686 1.042 1.701 sum -3.737 -0.001 -13.078 13.602 Atomic orbital electron populations 1.21342 0.90722 1.02951 1.01841 1.21739 0.95799 0.91112 1.03681 1.21349 1.00056 0.94341 1.01358 1.23316 1.02091 1.01066 0.92861 1.22921 1.01286 1.00603 0.94530 0.90753 1.20838 0.91000 0.89431 0.94315 1.46943 1.52939 1.20299 1.12437 1.18735 0.94184 0.94404 0.77851 1.21711 1.09351 1.33416 0.92167 0.93239 1.25716 1.00363 0.97321 0.95226 1.70027 1.41225 1.47387 0.98093 0.85676 0.79978 0.79243 0.77212 1.20450 1.19994 1.19600 1.18196 0.92009 0.86160 0.92679 1.20825 1.07962 1.01390 0.93428 1.21156 0.95352 0.92728 1.00016 1.21080 1.04063 1.02107 0.94473 1.21062 0.97884 0.95267 0.95916 1.20847 1.05112 0.98050 1.00446 0.92951 0.90558 0.91521 0.92982 0.90157 0.93700 0.89389 0.87458 0.89673 0.92098 0.97323 0.97615 0.92560 0.85224 0.83513 0.84253 0.85530 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 8.86 71.98 0.64 -1.79 16 2 C -0.12 -3.28 2.70 -52.15 -0.14 -3.42 16 3 C -0.11 -2.89 9.85 71.98 0.71 -2.18 16 4 C -0.16 -4.17 9.25 30.62 0.28 -3.88 16 5 C -0.17 -5.98 5.73 -10.79 -0.06 -6.04 16 6 H 0.07 3.24 6.57 -2.39 -0.02 3.23 16 7 C 0.17 5.99 4.57 86.38 0.39 6.39 16 8 N -0.62 -27.16 2.59 -701.64 -1.82 -28.98 16 9 C 0.27 14.29 4.96 85.63 0.42 14.71 16 10 C -0.53 -29.74 9.03 25.60 0.23 -29.51 16 11 H 0.05 2.84 6.66 -2.91 -0.02 2.82 16 12 C 0.01 0.72 5.46 84.66 0.46 1.18 16 13 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 14 Si 0.95 44.90 29.54 68.60 2.03 46.92 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 C 0.21 8.84 6.55 38.21 0.25 9.09 16 19 C -0.21 -7.11 9.21 22.40 0.21 -6.90 16 20 C -0.07 -2.10 10.04 22.25 0.22 -1.88 16 21 C -0.20 -5.75 10.04 22.29 0.22 -5.52 16 22 C -0.08 -2.87 10.04 22.25 0.22 -2.65 16 23 C -0.22 -9.50 9.21 22.40 0.21 -9.29 16 24 H 0.05 1.23 7.84 -2.39 -0.02 1.21 16 25 H 0.08 1.35 7.92 -2.39 -0.02 1.33 16 26 H 0.07 1.29 7.90 -2.39 -0.02 1.27 16 27 H 0.05 1.31 7.90 -2.39 -0.02 1.29 16 28 H 0.08 1.61 7.92 -2.38 -0.02 1.59 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 2.32 8.05 -2.39 -0.02 2.30 16 31 H 0.11 2.43 7.43 -2.39 -0.02 2.42 16 32 H 0.09 2.57 5.92 -2.39 -0.01 2.56 16 33 H 0.06 2.24 7.52 -2.39 -0.02 2.22 16 34 H 0.01 0.51 6.20 -2.38 -0.01 0.49 16 35 H 0.01 0.33 7.89 -2.39 -0.02 0.31 16 36 H 0.27 14.93 8.31 -92.71 -0.77 14.15 16 37 H 0.13 3.78 5.39 -2.91 -0.02 3.76 16 38 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 39 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 41 H 0.09 4.62 6.14 -2.91 -0.02 4.60 16 Total: -1.00 -63.35 330.11 5.76 -57.58 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.99 Total: 20.94 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 4.27 Total: -41.70 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.53 Total: -83.74 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -63.35 5.76 -57.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722881113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.331 kcal (2) G-P(sol) polarization free energy of solvation -63.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds