Wall clock time and date at job start Mon Mar 30 2020 07:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00310 * 2 1 4 4 C 1.52997 * 109.47238 * 124.99919 * 3 2 1 5 5 C 1.52996 * 109.47131 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47131 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.47289 * 180.02562 * 6 5 4 8 8 C 1.39668 * 120.00181 * 180.02562 * 7 6 5 9 9 C 1.38907 * 120.07584 * 359.71907 * 8 7 6 10 10 C 1.38108 * 119.92754 * 179.77093 * 9 8 7 11 11 C 1.38283 * 120.07138 * 0.50866 * 10 9 8 12 12 C 1.50700 * 119.92567 * 179.72344 * 11 10 9 13 13 C 1.50699 * 109.47004 * 270.02519 * 12 11 10 14 14 H 1.08005 * 120.00240 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00044 * 180.02562 * 13 12 11 16 16 N 1.31521 * 120.00216 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99929 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47154 * 90.00290 * 17 15 13 19 19 H 1.48501 * 109.47175 * 210.00420 * 17 15 13 20 20 H 1.48499 * 109.47259 * 329.99815 * 17 15 13 21 21 C 1.38292 * 120.15211 * 359.74911 * 11 10 9 22 22 C 1.38103 * 120.06781 * 359.97438 * 21 11 10 23 23 H 1.08000 * 119.99695 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.00332 * 180.02562 * 1 2 3 25 25 H 1.08009 * 119.99993 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46460 * 5.00310 * 3 2 1 27 27 H 1.09001 * 109.46740 * 245.00221 * 3 2 1 28 28 H 1.09001 * 109.46832 * 60.00314 * 4 3 2 29 29 H 1.09004 * 109.47261 * 300.00295 * 4 3 2 30 30 H 1.09001 * 109.46997 * 60.00426 * 5 4 3 31 31 H 1.08996 * 109.47452 * 300.00000 * 5 4 3 32 32 H 1.09001 * 109.47289 * 60.00050 * 6 5 4 33 33 H 1.09004 * 109.47261 * 300.00306 * 6 5 4 34 34 H 0.97001 * 119.99251 * 0.02562 * 7 6 5 35 35 H 1.08004 * 120.03686 * 0.02562 * 9 8 7 36 36 H 1.07998 * 119.96672 * 180.25929 * 10 9 8 37 37 H 1.08997 * 109.47151 * 30.02383 * 12 11 10 38 38 H 1.08997 * 109.47346 * 150.02750 * 12 11 10 39 39 H 0.96998 * 119.99949 * 180.02562 * 16 15 13 40 40 H 1.07994 * 119.96476 * 180.02562 * 21 11 10 41 41 H 1.08003 * 120.03201 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8006 2.6578 1.1812 6 6 4.7716 2.6860 2.3632 7 7 5.5042 3.9547 2.3632 8 6 6.4542 4.2126 3.3540 9 6 6.7015 3.2697 4.3436 10 6 7.6450 3.5259 5.3191 11 6 8.3356 4.7239 5.3176 12 6 9.3599 5.0026 6.3872 13 6 8.6927 5.6773 7.5580 14 1 7.6330 5.8841 7.5301 15 6 9.4353 6.0317 8.6643 16 7 8.8529 6.6201 9.6863 17 14 11.2682 5.6748 8.7123 18 1 12.0125 6.8308 8.1510 19 1 11.6919 5.4484 10.1175 20 1 11.5576 4.4614 7.9066 21 6 8.0880 5.6671 4.3370 22 6 7.1500 5.4149 3.3553 23 1 -0.5399 0.9353 0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4025 -0.9314 28 1 3.7400 0.5065 1.0920 29 1 2.4773 1.2356 2.1130 30 1 3.0959 3.4846 1.2706 31 1 4.3584 2.7548 0.2499 32 1 5.4763 1.8592 2.2744 33 1 4.2134 2.5891 3.2944 34 1 5.3294 4.6156 1.6750 35 1 6.1596 2.3355 4.3477 36 1 7.8408 2.7915 6.0863 37 1 9.8072 4.0644 6.7152 38 1 10.1359 5.6545 5.9862 39 1 9.3755 6.8697 10.4645 40 1 8.6294 6.6016 4.3384 41 1 6.9568 6.1521 2.5900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902228034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:04 Heat of formation + Delta-G solvation = 18.728031 kcal Electronic energy + Delta-G solvation = -17685.942671 eV Core-core repulsion = 14950.963203 eV Total energy + Delta-G solvation = -2734.979468 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.96975 -37.12906 -35.56664 -33.39688 -32.43209 -30.56520 -30.21217 -28.32391 -26.18311 -23.89042 -22.54880 -21.89046 -21.09359 -20.09728 -19.86738 -16.81819 -16.67803 -16.24695 -15.74271 -15.23675 -14.72245 -14.24322 -14.03143 -13.86228 -13.54287 -13.20695 -12.91706 -12.67082 -12.44966 -12.33516 -12.14636 -11.71745 -11.52356 -11.44368 -11.30798 -11.10808 -10.90228 -10.58007 -10.19772 -10.08923 -9.87928 -9.69746 -9.39346 -9.05215 -8.51095 -8.24465 -6.74108 -6.00061 -3.97848 1.90790 2.11394 2.34754 3.33466 3.40843 3.44758 3.62776 4.41973 4.48028 4.57891 4.61825 4.64650 4.81761 5.06939 5.10211 5.24025 5.31964 5.42587 5.43572 5.51603 5.53650 5.57971 5.61809 5.74563 5.95199 5.96273 6.00864 6.12301 6.25660 6.27362 6.39467 6.41810 6.67360 6.83328 7.10072 7.12736 7.22530 7.44940 7.77266 7.77461 7.85658 8.06055 8.59910 9.06848 9.61136 11.13098 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.046725 B = 0.002691 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.107192 B =10403.143105 C =10598.175151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.095 4.095 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.130 3.870 7 N -0.759 5.759 8 C 0.184 3.816 9 C -0.194 4.194 10 C -0.078 4.078 11 C -0.082 4.082 12 C 0.020 3.980 13 C -0.508 4.508 14 H 0.073 0.927 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.077 4.077 22 C -0.194 4.194 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.393 0.607 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.024 0.976 38 H 0.020 0.980 39 H 0.263 0.737 40 H 0.117 0.883 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 -10.798 -20.098 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.171 4.171 3 C -0.132 4.132 4 C -0.150 4.150 5 C -0.168 4.168 6 C 0.005 3.995 7 N -0.392 5.392 8 C 0.085 3.915 9 C -0.217 4.217 10 C -0.096 4.096 11 C -0.084 4.084 12 C -0.018 4.018 13 C -0.546 4.546 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.542 5.542 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.096 4.096 22 C -0.216 4.216 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.126 0.874 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.226 0.774 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.042 0.958 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.135 0.865 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.617 -10.915 -19.865 25.469 hybrid contribution 0.748 0.150 -0.023 0.763 sum -10.869 -10.765 -19.888 25.091 Atomic orbital electron populations 1.23868 0.96027 1.01836 1.01694 1.22998 0.96061 0.98627 0.99439 1.20782 0.98221 0.95348 0.98876 1.21448 0.97812 0.97231 0.98537 1.21769 0.98197 0.98295 0.98518 1.21199 0.93610 0.86799 0.97920 1.44422 1.43827 1.19414 1.31493 1.17630 0.90280 0.94097 0.89537 1.20506 1.03691 0.99617 0.97854 1.20816 0.94965 0.97097 0.96764 1.20047 0.99130 0.93207 0.95972 1.18704 0.93223 0.96944 0.92892 1.21025 0.97138 1.37873 0.98598 0.90908 1.25029 0.98342 0.94712 0.95445 1.69914 1.36165 1.41619 1.06510 0.86799 0.86064 0.79404 0.77191 1.20268 1.21389 1.18939 1.20800 0.96773 0.98565 0.93473 1.20454 1.01954 0.96697 1.02476 0.88628 0.88596 0.87411 0.91482 0.90983 0.91511 0.91474 0.91425 0.91452 0.92805 0.92717 0.77361 0.87240 0.86566 0.95785 0.96222 0.92757 0.86513 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.25 14.32 29.02 0.42 -0.84 16 2 C -0.15 -1.01 9.52 -36.02 -0.34 -1.35 16 3 C -0.10 -0.60 5.66 -27.88 -0.16 -0.76 16 4 C -0.11 -0.77 5.20 -26.73 -0.14 -0.90 16 5 C -0.13 -0.98 5.33 -26.73 -0.14 -1.13 16 6 C 0.13 1.34 4.91 -4.04 -0.02 1.32 16 7 N -0.76 -9.50 5.73 -58.63 -0.34 -9.84 16 8 C 0.18 3.01 6.65 -83.79 -0.56 2.45 16 9 C -0.19 -3.37 9.31 -39.38 -0.37 -3.74 16 10 C -0.08 -1.55 9.69 -39.61 -0.38 -1.93 16 11 C -0.08 -1.80 5.07 -104.59 -0.53 -2.33 16 12 C 0.02 0.48 4.17 -29.04 -0.12 0.36 16 13 C -0.51 -14.80 9.65 -34.44 -0.33 -15.13 16 14 H 0.07 2.33 7.98 -52.48 -0.42 1.91 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -28.18 13.96 55.43 0.77 -27.40 16 17 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 21 C -0.08 -1.53 9.69 -39.61 -0.38 -1.92 16 22 C -0.19 -3.31 9.90 -39.38 -0.39 -3.70 16 23 H 0.10 0.57 7.84 -52.49 -0.41 0.16 16 24 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 25 H 0.11 0.64 8.06 -52.48 -0.42 0.22 16 26 H 0.07 0.42 7.79 -51.93 -0.40 0.02 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.57 7.96 -51.93 -0.41 0.15 16 33 H 0.05 0.61 7.94 -51.93 -0.41 0.19 16 34 H 0.39 4.19 8.49 -40.82 -0.35 3.85 16 35 H 0.11 1.65 6.73 -52.48 -0.35 1.30 16 36 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 37 H 0.02 0.59 7.14 -51.93 -0.37 0.22 16 38 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -31.63 341.14 -9.56 -41.19 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.92 Total: 1.51 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -3.55 Total: -27.76 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.44 Total: -37.24 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.63 -9.56 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902228034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.915 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds