Wall clock time and date at job start Mon Mar 30 2020 07:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00310 * 2 1 4 4 C 1.52997 * 109.47238 * 124.99919 * 3 2 1 5 5 C 1.52996 * 109.47131 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47131 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.47289 * 180.02562 * 6 5 4 8 8 C 1.39668 * 120.00181 * 180.02562 * 7 6 5 9 9 C 1.38907 * 120.07584 * 359.71907 * 8 7 6 10 10 C 1.38108 * 119.92754 * 179.77093 * 9 8 7 11 11 C 1.38283 * 120.07138 * 0.50866 * 10 9 8 12 12 C 1.50700 * 119.92567 * 179.72344 * 11 10 9 13 13 C 1.50699 * 109.47004 * 270.02519 * 12 11 10 14 14 H 1.08005 * 120.00240 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00044 * 180.02562 * 13 12 11 16 16 N 1.31521 * 120.00216 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99929 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47154 * 90.00290 * 17 15 13 19 19 H 1.48501 * 109.47175 * 210.00420 * 17 15 13 20 20 H 1.48499 * 109.47259 * 329.99815 * 17 15 13 21 21 C 1.38292 * 120.15211 * 359.74911 * 11 10 9 22 22 C 1.38103 * 120.06781 * 359.97438 * 21 11 10 23 23 H 1.08000 * 119.99695 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.00332 * 180.02562 * 1 2 3 25 25 H 1.08009 * 119.99993 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46460 * 5.00310 * 3 2 1 27 27 H 1.09001 * 109.46740 * 245.00221 * 3 2 1 28 28 H 1.09001 * 109.46832 * 60.00314 * 4 3 2 29 29 H 1.09004 * 109.47261 * 300.00295 * 4 3 2 30 30 H 1.09001 * 109.46997 * 60.00426 * 5 4 3 31 31 H 1.08996 * 109.47452 * 300.00000 * 5 4 3 32 32 H 1.09001 * 109.47289 * 60.00050 * 6 5 4 33 33 H 1.09004 * 109.47261 * 300.00306 * 6 5 4 34 34 H 0.97001 * 119.99251 * 0.02562 * 7 6 5 35 35 H 1.08004 * 120.03686 * 0.02562 * 9 8 7 36 36 H 1.07998 * 119.96672 * 180.25929 * 10 9 8 37 37 H 1.08997 * 109.47151 * 30.02383 * 12 11 10 38 38 H 1.08997 * 109.47346 * 150.02750 * 12 11 10 39 39 H 0.96998 * 119.99949 * 180.02562 * 16 15 13 40 40 H 1.07994 * 119.96476 * 180.02562 * 21 11 10 41 41 H 1.08003 * 120.03201 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8006 2.6578 1.1812 6 6 4.7716 2.6860 2.3632 7 7 5.5042 3.9547 2.3632 8 6 6.4542 4.2126 3.3540 9 6 6.7015 3.2697 4.3436 10 6 7.6450 3.5259 5.3191 11 6 8.3356 4.7239 5.3176 12 6 9.3599 5.0026 6.3872 13 6 8.6927 5.6773 7.5580 14 1 7.6330 5.8841 7.5301 15 6 9.4353 6.0317 8.6643 16 7 8.8529 6.6201 9.6863 17 14 11.2682 5.6748 8.7123 18 1 12.0125 6.8308 8.1510 19 1 11.6919 5.4484 10.1175 20 1 11.5576 4.4614 7.9066 21 6 8.0880 5.6671 4.3370 22 6 7.1500 5.4149 3.3553 23 1 -0.5399 0.9353 0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4025 -0.9314 28 1 3.7400 0.5065 1.0920 29 1 2.4773 1.2356 2.1130 30 1 3.0959 3.4846 1.2706 31 1 4.3584 2.7548 0.2499 32 1 5.4763 1.8592 2.2744 33 1 4.2134 2.5891 3.2944 34 1 5.3294 4.6156 1.6750 35 1 6.1596 2.3355 4.3477 36 1 7.8408 2.7915 6.0863 37 1 9.8072 4.0644 6.7152 38 1 10.1359 5.6545 5.9862 39 1 9.3755 6.8697 10.4645 40 1 8.6294 6.6016 4.3384 41 1 6.9568 6.1521 2.5900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902228034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:03 Heat of formation + Delta-G solvation = 1.639958 kcal Electronic energy + Delta-G solvation = -17686.683666 eV Core-core repulsion = 14950.963203 eV Total energy + Delta-G solvation = -2735.720463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.32312 -37.92819 -36.53660 -35.06385 -33.72258 -32.05277 -31.66768 -29.42210 -27.59565 -24.90746 -24.21965 -23.05930 -21.92960 -21.42906 -20.57265 -18.92594 -18.05788 -16.94367 -16.78439 -16.47530 -15.91779 -15.77441 -15.04634 -14.98555 -14.75796 -14.43084 -14.22594 -14.15548 -13.71586 -13.49090 -13.35513 -13.20076 -12.72039 -12.46551 -12.35958 -12.09554 -11.92840 -11.74267 -11.62344 -11.59287 -11.50954 -11.42944 -10.75970 -10.54796 -10.18171 -9.68889 -8.27757 -8.05446 -6.31014 0.66797 0.87473 1.37331 1.39355 1.42624 1.51957 2.37799 2.60182 3.06966 3.12946 3.84319 4.02634 4.05842 4.11624 4.23638 4.27923 4.44350 4.49829 4.53584 4.63299 4.70574 4.76400 4.79509 4.89541 4.94409 4.97693 5.08246 5.12261 5.13034 5.19272 5.35139 5.35464 5.43030 5.52645 5.61641 5.69350 5.78857 5.91926 6.05412 6.16001 6.32176 6.57545 6.75656 6.98430 7.32094 8.89747 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.046725 B = 0.002691 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.107192 B =10403.143105 C =10598.175151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.093 4.093 4 C -0.109 4.109 5 C -0.119 4.119 6 C 0.125 3.875 7 N -0.746 5.746 8 C 0.196 3.804 9 C -0.198 4.198 10 C -0.090 4.090 11 C -0.125 4.125 12 C 0.027 3.973 13 C -0.516 4.516 14 H 0.025 0.975 15 C 0.003 3.997 16 N -0.951 5.951 17 Si 0.953 3.047 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.247 1.247 21 C -0.089 4.089 22 C -0.194 4.194 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.405 0.595 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.266 0.734 40 H 0.116 0.884 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.461 -11.783 -22.422 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.181 4.181 3 C -0.130 4.130 4 C -0.147 4.147 5 C -0.157 4.157 6 C 0.000 4.000 7 N -0.378 5.378 8 C 0.093 3.907 9 C -0.221 4.221 10 C -0.108 4.108 11 C -0.126 4.126 12 C -0.010 4.010 13 C -0.554 4.554 14 H 0.043 0.957 15 C -0.194 4.194 16 N -0.592 5.592 17 Si 0.776 3.224 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.171 1.171 21 C -0.108 4.108 22 C -0.216 4.216 23 H 0.116 0.884 24 H 0.121 0.879 25 H 0.130 0.870 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.241 0.759 35 H 0.150 0.850 36 H 0.132 0.868 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.134 0.866 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.535 -11.911 -22.239 27.739 hybrid contribution 0.508 0.434 0.610 0.905 sum -11.027 -11.476 -21.629 26.854 Atomic orbital electron populations 1.24015 0.96186 1.02343 1.01457 1.23123 0.96271 0.98999 0.99665 1.20759 0.98120 0.95251 0.98870 1.21404 0.97826 0.96903 0.98530 1.21682 0.97647 0.98798 0.97577 1.21373 0.93931 0.85679 0.98975 1.44527 1.42395 1.20495 1.30408 1.17754 0.90007 0.93322 0.89573 1.20691 1.03127 1.00855 0.97397 1.20890 0.95697 0.96595 0.97647 1.19937 1.00618 0.95209 0.96881 1.18539 0.93938 0.96301 0.92217 1.21256 0.95274 1.38183 1.00687 0.95692 1.26039 1.04195 0.94360 0.94785 1.70075 1.38519 1.43177 1.07465 0.85612 0.78906 0.80193 0.77675 1.18965 1.20809 1.17062 1.20902 0.97743 0.98188 0.93936 1.20697 1.00962 0.97677 1.02303 0.88419 0.87950 0.86965 0.91469 0.90358 0.91197 0.92056 0.91125 0.90482 0.92508 0.93313 0.75932 0.84977 0.86832 0.95650 0.95671 0.92471 0.86555 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.29 14.32 67.79 0.97 -1.32 16 2 C -0.16 -1.86 9.52 25.65 0.24 -1.62 16 3 C -0.09 -0.97 5.66 29.85 0.17 -0.80 16 4 C -0.11 -1.22 5.20 30.59 0.16 -1.07 16 5 C -0.12 -1.45 5.33 30.59 0.16 -1.29 16 6 C 0.12 2.21 4.91 86.38 0.42 2.64 16 7 N -0.75 -16.38 5.73 -339.41 -1.95 -18.32 16 8 C 0.20 5.97 6.65 38.21 0.25 6.22 16 9 C -0.20 -6.61 9.31 22.40 0.21 -6.40 16 10 C -0.09 -3.59 9.69 22.25 0.22 -3.37 16 11 C -0.12 -5.55 5.07 -19.84 -0.10 -5.65 16 12 C 0.03 1.37 4.17 29.10 0.12 1.49 16 13 C -0.52 -31.17 9.65 25.60 0.25 -30.93 16 14 H 0.02 1.68 7.98 -2.91 -0.02 1.66 16 15 C 0.00 0.15 5.47 84.65 0.46 0.62 16 16 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 17 Si 0.95 45.31 27.47 68.60 1.88 47.19 16 18 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 21 C -0.09 -3.51 9.69 22.25 0.22 -3.30 16 22 C -0.19 -6.28 9.90 22.40 0.22 -6.06 16 23 H 0.10 1.03 7.84 -2.91 -0.02 1.00 16 24 H 0.10 0.98 8.06 -2.91 -0.02 0.96 16 25 H 0.11 1.15 8.06 -2.91 -0.02 1.13 16 26 H 0.07 0.70 7.79 -2.39 -0.02 0.68 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.02 7.96 -2.39 -0.02 1.00 16 33 H 0.05 0.96 7.94 -2.38 -0.02 0.94 16 34 H 0.41 7.16 8.49 -92.71 -0.79 6.38 16 35 H 0.13 3.71 6.73 -2.91 -0.02 3.69 16 36 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.03 1.24 7.14 -2.39 -0.02 1.22 16 38 H 0.03 1.21 7.51 -2.39 -0.02 1.19 16 39 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 40 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -69.97 341.14 4.35 -65.62 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.14 Total: 17.27 kcal Atomic # 6 Polarization: -54.81 SS G_CDS: 3.98 Total: -50.83 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -1.65 Total: -79.24 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.19 kcal Total: -69.97 4.35 -65.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902228034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.259 kcal (2) G-P(sol) polarization free energy of solvation -69.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds