Wall clock time and date at job start Mon Mar 30 2020 07:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47488 * 2 1 4 4 H 1.09003 * 112.90677 * 316.25444 * 3 2 1 5 5 C 1.53785 * 113.61390 * 87.50084 * 3 2 1 6 6 C 1.53781 * 87.08034 * 139.98126 * 5 3 2 7 7 C 1.53777 * 87.08163 * 334.56999 * 6 5 3 8 8 H 1.09007 * 113.61812 * 140.06514 * 7 6 5 9 9 N 1.46502 * 113.61611 * 270.87742 * 7 6 5 10 10 C 1.39669 * 120.00681 * 255.49927 * 9 7 6 11 11 C 1.38905 * 120.07711 * 179.97438 * 10 9 7 12 12 C 1.38102 * 119.92398 * 179.72013 * 11 10 9 13 13 C 1.38284 * 120.07730 * 0.28542 * 12 11 10 14 14 C 1.50702 * 119.92910 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47375 * 89.99517 * 14 13 12 16 16 H 1.07992 * 119.99685 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99882 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99556 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00134 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47316 * 89.99705 * 19 17 15 21 21 H 1.48502 * 109.46923 * 209.99771 * 19 17 15 22 22 H 1.48499 * 109.47000 * 329.99243 * 19 17 15 23 23 C 1.38288 * 120.14784 * 0.02562 * 13 12 11 24 24 C 1.38104 * 120.07422 * 359.96444 * 23 13 12 25 25 H 1.09003 * 109.47031 * 300.00037 * 1 2 3 26 26 H 1.09005 * 109.47096 * 59.99702 * 1 2 3 27 27 H 1.09000 * 109.47370 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47031 * 239.99963 * 2 1 3 29 29 H 1.09005 * 109.47096 * 120.00298 * 2 1 3 30 30 H 1.09005 * 113.61050 * 25.43647 * 5 3 2 31 31 H 1.08999 * 113.69456 * 254.54272 * 5 3 2 32 32 H 1.08994 * 113.61614 * 220.01736 * 6 5 3 33 33 H 1.09002 * 113.69005 * 89.12582 * 6 5 3 34 34 H 0.97008 * 119.99236 * 75.49439 * 9 7 6 35 35 H 1.08002 * 120.04044 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.96256 * 180.29943 * 12 11 10 37 37 H 1.08998 * 109.46900 * 209.99776 * 14 13 12 38 38 H 1.09005 * 109.46585 * 329.99345 * 14 13 12 39 39 H 0.97002 * 119.99370 * 180.02562 * 18 17 15 40 40 H 1.08007 * 119.96217 * 179.97438 * 23 13 12 41 41 H 1.07997 * 120.03623 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4976 2.0843 -0.6943 5 6 2.1875 2.0437 1.4077 6 6 3.4888 2.6933 0.9084 7 6 3.5687 1.5553 -0.1227 8 1 3.9063 1.8806 -1.1069 9 7 4.2854 0.3732 0.3622 10 6 5.5840 0.1129 -0.0811 11 6 6.2651 -1.0072 0.3782 12 6 7.5469 -1.2646 -0.0667 13 6 8.1547 -0.4055 -0.9638 14 6 9.5538 -0.6893 -1.4466 15 6 9.4937 -1.5405 -2.6887 16 1 8.5380 -1.8451 -3.0887 17 6 10.6588 -1.9294 -3.3149 18 7 10.6063 -2.6727 -4.3986 19 14 12.3119 -1.4019 -2.6233 20 1 12.7885 -2.4177 -1.6506 21 1 13.2943 -1.2770 -3.7299 22 1 12.1671 -0.0915 -1.9398 23 6 7.4820 0.7140 -1.4181 24 6 6.1999 0.9773 -0.9774 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.3430 1.2976 2.1871 31 1 1.4090 2.7636 1.6603 32 1 4.2950 2.6756 1.6417 33 1 3.3440 3.6773 0.4623 34 1 3.8578 -0.2289 0.9914 35 1 5.7909 -1.6788 1.0786 36 1 8.0751 -2.1379 0.2863 37 1 10.0572 0.2503 -1.6740 38 1 10.1058 -1.2185 -0.6697 39 1 11.4260 -2.9467 -4.8390 40 1 7.9597 1.3832 -2.1184 41 1 5.6749 1.8515 -1.3329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903293964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:46 Heat of formation + Delta-G solvation = 30.295798 kcal Electronic energy + Delta-G solvation = -18651.654664 eV Core-core repulsion = 15917.176812 eV Total energy + Delta-G solvation = -2734.477852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07177 -38.36824 -34.48567 -32.90195 -32.44001 -30.27417 -30.17823 -26.73779 -25.81175 -24.96715 -22.51671 -22.12898 -21.73647 -20.14163 -18.81981 -17.28637 -16.68327 -15.81519 -15.36418 -14.86329 -14.53636 -14.27491 -13.97628 -13.69454 -13.37401 -13.00878 -12.87318 -12.70169 -12.48003 -12.32334 -12.16989 -11.67543 -11.54828 -11.43011 -11.15392 -10.97952 -10.57099 -10.47776 -10.26595 -10.08551 -10.02728 -9.88227 -9.37450 -9.03763 -8.51455 -8.24945 -6.74120 -6.00491 -3.98294 2.11081 2.33377 3.33250 3.40661 3.44553 3.58141 4.28277 4.43280 4.47767 4.58720 4.60807 4.80615 4.99993 5.09168 5.22564 5.31563 5.37249 5.46281 5.52452 5.55787 5.63508 5.70178 5.78674 5.84950 5.87757 5.93169 5.99908 6.09015 6.12509 6.19308 6.27495 6.46056 6.67169 6.83543 7.09707 7.12583 7.22616 7.46383 7.77091 7.77318 7.85708 8.06199 8.59525 9.06496 9.60821 11.12745 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.039266 B = 0.003679 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.909370 B = 7609.740877 C = 7861.632439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.118 4.118 4 H 0.097 0.903 5 C -0.134 4.134 6 C -0.163 4.163 7 C 0.139 3.861 8 H 0.088 0.912 9 N -0.735 5.735 10 C 0.187 3.813 11 C -0.193 4.193 12 C -0.077 4.077 13 C -0.081 4.081 14 C 0.020 3.980 15 C -0.509 4.509 16 H 0.073 0.927 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.078 4.078 24 C -0.194 4.194 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.394 0.606 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.024 0.976 38 H 0.019 0.981 39 H 0.263 0.737 40 H 0.116 0.884 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.656 9.138 11.605 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.137 4.137 4 H 0.115 0.885 5 C -0.172 4.172 6 C -0.202 4.202 7 C 0.032 3.968 8 H 0.106 0.894 9 N -0.366 5.366 10 C 0.088 3.912 11 C -0.216 4.216 12 C -0.096 4.096 13 C -0.082 4.082 14 C -0.018 4.018 15 C -0.547 4.547 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.097 4.097 24 C -0.216 4.216 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.229 0.771 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.042 0.958 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.134 0.866 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.580 9.199 11.371 22.868 hybrid contribution 0.687 -0.078 0.430 0.814 sum -16.893 9.121 11.800 22.535 Atomic orbital electron populations 1.21751 0.95926 1.01466 1.01591 1.21398 0.95572 0.95827 1.02224 1.23006 0.95703 0.97109 0.97906 0.88526 1.22952 0.97838 0.99942 0.96423 1.23463 0.98105 0.98523 1.00132 1.21711 0.91363 0.86444 0.97298 0.89361 1.44095 1.13298 1.27549 1.51672 1.17609 0.84568 0.94346 0.94711 1.20437 0.96502 0.98672 1.05940 1.20788 0.93846 0.98400 0.96574 1.20040 0.98422 0.93890 0.95884 1.18704 0.89281 0.97098 0.96673 1.21026 0.94734 1.30746 1.08176 0.90905 1.25022 0.99034 0.94694 0.94719 1.69915 1.28084 1.36834 1.19398 0.86803 0.84050 0.79838 0.78802 1.20257 1.21390 1.18920 1.20821 0.93606 0.97157 0.98074 1.20548 0.96710 1.01320 1.02984 0.92913 0.92820 0.92907 0.91442 0.92168 0.90442 0.91760 0.91039 0.89838 0.77148 0.87371 0.86548 0.95802 0.96245 0.92749 0.86600 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.90 37.16 0.37 -0.73 16 2 C -0.11 -0.96 5.01 -26.73 -0.13 -1.09 16 3 C -0.12 -1.00 3.62 -89.81 -0.32 -1.32 16 4 H 0.10 0.75 8.13 -51.93 -0.42 0.33 16 5 C -0.13 -1.07 7.53 -25.92 -0.20 -1.27 16 6 C -0.16 -1.51 7.88 -25.92 -0.20 -1.71 16 7 C 0.14 1.46 3.91 -67.12 -0.26 1.20 16 8 H 0.09 1.00 6.28 -51.92 -0.33 0.68 16 9 N -0.73 -9.01 5.00 -51.38 -0.26 -9.27 16 10 C 0.19 2.98 6.65 -83.79 -0.56 2.42 16 11 C -0.19 -3.26 9.90 -39.38 -0.39 -3.65 16 12 C -0.08 -1.52 9.69 -39.61 -0.38 -1.90 16 13 C -0.08 -1.75 5.07 -104.59 -0.53 -2.28 16 14 C 0.02 0.48 4.17 -29.03 -0.12 0.36 16 15 C -0.51 -14.78 9.65 -34.44 -0.33 -15.11 16 16 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 19 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 23 C -0.08 -1.53 9.69 -39.61 -0.38 -1.92 16 24 C -0.19 -3.29 9.25 -39.38 -0.36 -3.65 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.50 6.74 -51.93 -0.35 0.15 16 30 H 0.08 0.63 7.90 -51.93 -0.41 0.22 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.39 4.29 7.21 -40.82 -0.29 4.00 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 37 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 38 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 41 H 0.11 1.64 6.12 -52.49 -0.32 1.32 16 LS Contribution 329.06 15.07 4.96 4.96 Total: -1.00 -30.92 329.06 -9.81 -40.73 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.70 Total: 2.65 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -3.91 Total: -28.81 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.52 Total: -36.65 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.92 -9.81 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903293964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.021 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds