Wall clock time and date at job start Mon Mar 30 2020 07:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47488 * 2 1 4 4 H 1.09003 * 112.90677 * 316.25444 * 3 2 1 5 5 C 1.53785 * 113.61390 * 87.50084 * 3 2 1 6 6 C 1.53781 * 87.08034 * 139.98126 * 5 3 2 7 7 C 1.53777 * 87.08163 * 334.56999 * 6 5 3 8 8 H 1.09007 * 113.61812 * 140.06514 * 7 6 5 9 9 N 1.46502 * 113.61611 * 270.87742 * 7 6 5 10 10 C 1.39669 * 120.00681 * 255.49927 * 9 7 6 11 11 C 1.38905 * 120.07711 * 179.97438 * 10 9 7 12 12 C 1.38102 * 119.92398 * 179.72013 * 11 10 9 13 13 C 1.38284 * 120.07730 * 0.28542 * 12 11 10 14 14 C 1.50702 * 119.92910 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47375 * 89.99517 * 14 13 12 16 16 H 1.07992 * 119.99685 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99882 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99556 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00134 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47316 * 89.99705 * 19 17 15 21 21 H 1.48502 * 109.46923 * 209.99771 * 19 17 15 22 22 H 1.48499 * 109.47000 * 329.99243 * 19 17 15 23 23 C 1.38288 * 120.14784 * 0.02562 * 13 12 11 24 24 C 1.38104 * 120.07422 * 359.96444 * 23 13 12 25 25 H 1.09003 * 109.47031 * 300.00037 * 1 2 3 26 26 H 1.09005 * 109.47096 * 59.99702 * 1 2 3 27 27 H 1.09000 * 109.47370 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47031 * 239.99963 * 2 1 3 29 29 H 1.09005 * 109.47096 * 120.00298 * 2 1 3 30 30 H 1.09005 * 113.61050 * 25.43647 * 5 3 2 31 31 H 1.08999 * 113.69456 * 254.54272 * 5 3 2 32 32 H 1.08994 * 113.61614 * 220.01736 * 6 5 3 33 33 H 1.09002 * 113.69005 * 89.12582 * 6 5 3 34 34 H 0.97008 * 119.99236 * 75.49439 * 9 7 6 35 35 H 1.08002 * 120.04044 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.96256 * 180.29943 * 12 11 10 37 37 H 1.08998 * 109.46900 * 209.99776 * 14 13 12 38 38 H 1.09005 * 109.46585 * 329.99345 * 14 13 12 39 39 H 0.97002 * 119.99370 * 180.02562 * 18 17 15 40 40 H 1.08007 * 119.96217 * 179.97438 * 23 13 12 41 41 H 1.07997 * 120.03623 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.4976 2.0843 -0.6943 5 6 2.1875 2.0437 1.4077 6 6 3.4888 2.6933 0.9084 7 6 3.5687 1.5553 -0.1227 8 1 3.9063 1.8806 -1.1069 9 7 4.2854 0.3732 0.3622 10 6 5.5840 0.1129 -0.0811 11 6 6.2651 -1.0072 0.3782 12 6 7.5469 -1.2646 -0.0667 13 6 8.1547 -0.4055 -0.9638 14 6 9.5538 -0.6893 -1.4466 15 6 9.4937 -1.5405 -2.6887 16 1 8.5380 -1.8451 -3.0887 17 6 10.6588 -1.9294 -3.3149 18 7 10.6063 -2.6727 -4.3986 19 14 12.3119 -1.4019 -2.6233 20 1 12.7885 -2.4177 -1.6506 21 1 13.2943 -1.2770 -3.7299 22 1 12.1671 -0.0915 -1.9398 23 6 7.4820 0.7140 -1.4181 24 6 6.1999 0.9773 -0.9774 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.3430 1.2976 2.1871 31 1 1.4090 2.7636 1.6603 32 1 4.2950 2.6756 1.6417 33 1 3.3440 3.6773 0.4623 34 1 3.8578 -0.2289 0.9914 35 1 5.7909 -1.6788 1.0786 36 1 8.0751 -2.1379 0.2863 37 1 10.0572 0.2503 -1.6740 38 1 10.1058 -1.2185 -0.6697 39 1 11.4260 -2.9467 -4.8390 40 1 7.9597 1.3832 -2.1184 41 1 5.6749 1.8515 -1.3329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903293964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:45 Heat of formation + Delta-G solvation = 13.899503 kcal Electronic energy + Delta-G solvation = -18652.365661 eV Core-core repulsion = 15917.176812 eV Total energy + Delta-G solvation = -2735.188849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00551 -39.64018 -35.95192 -34.57549 -33.42246 -31.89753 -31.66910 -28.33255 -26.51938 -25.94588 -24.31783 -23.36820 -22.50855 -21.66036 -19.73456 -18.92811 -18.42433 -16.89818 -16.48256 -16.21497 -15.83573 -15.46036 -15.24378 -14.78509 -14.61837 -14.45713 -14.09027 -14.04930 -13.73501 -13.50684 -13.39225 -13.15080 -12.80549 -12.45045 -12.38407 -12.04719 -11.86658 -11.79810 -11.68891 -11.52077 -11.43421 -11.13051 -10.91565 -10.76068 -10.42267 -9.68693 -8.28055 -8.04094 -6.31376 0.67161 0.87495 1.37180 1.39114 1.51761 2.37630 2.53975 3.06865 3.11975 3.55528 3.76131 3.89691 4.03251 4.13715 4.21541 4.36235 4.43232 4.47424 4.56744 4.64557 4.75503 4.76533 4.81462 4.93500 4.99028 5.05044 5.11773 5.13591 5.15868 5.18342 5.22138 5.30744 5.39181 5.42744 5.51302 5.55761 5.61715 5.71212 6.07826 6.16338 6.32436 6.60528 6.75513 6.96678 7.31949 8.89562 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.039266 B = 0.003679 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.909370 B = 7609.740877 C = 7861.632439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.108 0.892 5 C -0.125 4.125 6 C -0.158 4.158 7 C 0.122 3.878 8 H 0.080 0.920 9 N -0.722 5.722 10 C 0.202 3.798 11 C -0.195 4.195 12 C -0.088 4.088 13 C -0.123 4.123 14 C 0.028 3.972 15 C -0.517 4.517 16 H 0.025 0.975 17 C 0.004 3.996 18 N -0.952 5.952 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.247 1.247 23 C -0.089 4.089 24 C -0.196 4.196 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.403 0.597 35 H 0.137 0.863 36 H 0.115 0.885 37 H 0.025 0.975 38 H 0.024 0.976 39 H 0.267 0.733 40 H 0.113 0.887 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.943 10.586 13.608 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.127 4.127 4 H 0.126 0.874 5 C -0.163 4.163 6 C -0.197 4.197 7 C 0.016 3.984 8 H 0.098 0.902 9 N -0.352 5.352 10 C 0.099 3.901 11 C -0.217 4.217 12 C -0.107 4.107 13 C -0.125 4.125 14 C -0.010 4.010 15 C -0.555 4.555 16 H 0.043 0.957 17 C -0.192 4.192 18 N -0.593 5.593 19 Si 0.775 3.225 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.170 1.170 23 C -0.108 4.108 24 C -0.219 4.219 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.240 0.760 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.131 0.869 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.921 10.663 13.401 25.520 hybrid contribution 0.869 -0.525 -0.205 1.036 sum -18.051 10.138 13.196 24.552 Atomic orbital electron populations 1.21725 0.94888 1.01721 1.02139 1.21387 0.96506 0.95689 1.01458 1.22976 0.93811 0.97330 0.98594 0.87387 1.22917 0.97430 0.99980 0.95956 1.23438 0.98390 0.98645 0.99262 1.21973 0.92775 0.86312 0.97370 0.90169 1.44136 1.11876 1.28187 1.51046 1.17703 0.85703 0.93333 0.93317 1.20660 0.95539 0.99388 1.06128 1.20875 0.95132 0.98109 0.96584 1.19912 0.97775 0.96147 0.98641 1.18534 0.91776 0.96000 0.94643 1.21265 0.92938 1.31354 1.09928 0.95671 1.26023 1.03697 0.94588 0.94930 1.70075 1.29524 1.38516 1.21185 0.85621 0.78131 0.80349 0.78350 1.18969 1.20807 1.17041 1.20888 0.94803 0.96792 0.98304 1.20726 0.95815 1.02312 1.03015 0.92039 0.92579 0.92880 0.93174 0.91971 0.90393 0.90288 0.92299 0.88505 0.76030 0.84557 0.86663 0.95685 0.95746 0.92455 0.86885 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.90 71.98 0.71 -1.09 16 2 C -0.11 -1.66 5.01 30.59 0.15 -1.50 16 3 C -0.11 -1.51 3.62 -10.27 -0.04 -1.55 16 4 H 0.11 1.32 8.13 -2.39 -0.02 1.30 16 5 C -0.13 -1.59 7.53 31.12 0.23 -1.35 16 6 C -0.16 -2.47 7.88 31.12 0.25 -2.23 16 7 C 0.12 2.27 3.91 45.51 0.18 2.45 16 8 H 0.08 1.65 6.28 -2.38 -0.01 1.63 16 9 N -0.72 -16.03 5.00 -316.48 -1.58 -17.62 16 10 C 0.20 6.10 6.65 38.21 0.25 6.36 16 11 C -0.19 -6.32 9.90 22.40 0.22 -6.10 16 12 C -0.09 -3.48 9.69 22.25 0.22 -3.27 16 13 C -0.12 -5.46 5.07 -19.84 -0.10 -5.56 16 14 C 0.03 1.39 4.17 29.10 0.12 1.51 16 15 C -0.52 -31.23 9.65 25.60 0.25 -30.99 16 16 H 0.02 1.70 7.98 -2.91 -0.02 1.67 16 17 C 0.00 0.24 5.47 84.65 0.46 0.70 16 18 N -0.95 -61.30 13.96 21.45 0.30 -61.01 16 19 Si 0.95 45.31 27.47 68.60 1.88 47.19 16 20 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 23 C -0.09 -3.56 9.69 22.25 0.22 -3.34 16 24 C -0.20 -6.50 9.25 22.40 0.21 -6.30 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.88 6.74 -2.38 -0.02 0.86 16 30 H 0.08 1.01 7.90 -2.38 -0.02 0.99 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.40 7.67 7.21 -92.70 -0.67 7.00 16 35 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 36 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.02 1.22 7.14 -2.39 -0.02 1.21 16 38 H 0.02 1.18 7.51 -2.38 -0.02 1.16 16 39 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 40 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.13 3.74 6.12 -2.91 -0.02 3.72 16 Total: -1.00 -68.92 329.06 4.21 -64.71 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.27 Total: 18.96 kcal Atomic # 6 Polarization: -55.58 SS G_CDS: 3.33 Total: -52.25 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -1.28 Total: -78.62 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.19 kcal Total: -68.92 4.21 -64.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903293964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.611 kcal (2) G-P(sol) polarization free energy of solvation -68.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds