Wall clock time and date at job start Mon Mar 30 2020 06:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 112.84586 * 2 1 4 4 C 1.53781 * 113.61374 * 228.69169 * 2 1 3 5 5 C 1.53778 * 87.08034 * 220.02048 * 4 2 1 6 6 C 1.53775 * 113.61084 * 131.19627 * 2 1 3 7 7 H 1.09005 * 113.61209 * 254.61123 * 6 2 1 8 8 N 1.46500 * 113.61994 * 25.43131 * 6 2 1 9 9 C 1.39676 * 120.00062 * 204.99676 * 8 6 2 10 10 C 1.38906 * 120.07171 * 179.97438 * 9 8 6 11 11 C 1.38111 * 119.92343 * 179.97438 * 10 9 8 12 12 C 1.38288 * 120.07382 * 0.28047 * 11 10 9 13 13 C 1.50698 * 119.92407 * 179.69843 * 12 11 10 14 14 C 1.50695 * 109.47077 * 90.00107 * 13 12 11 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00403 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99758 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00253 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47046 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46895 * 119.99964 * 18 16 14 21 21 H 1.48502 * 109.47138 * 239.99653 * 18 16 14 22 22 C 1.38286 * 120.14755 * 359.44532 * 12 11 10 23 23 C 1.38112 * 120.07587 * 0.55318 * 22 12 11 24 24 H 1.08994 * 109.47534 * 288.80146 * 1 2 3 25 25 H 1.09002 * 109.47206 * 48.80609 * 1 2 3 26 26 H 1.09005 * 109.47066 * 168.80507 * 1 2 3 27 27 H 1.09000 * 109.46710 * 191.19959 * 3 2 1 28 28 H 1.09000 * 109.46895 * 311.19321 * 3 2 1 29 29 H 1.08996 * 109.47369 * 71.19512 * 3 2 1 30 30 H 1.09000 * 113.61393 * 334.57222 * 4 2 1 31 31 H 1.09002 * 113.61104 * 105.38339 * 4 2 1 32 32 H 1.09002 * 113.61402 * 270.88646 * 5 4 2 33 33 H 1.08999 * 113.61683 * 139.98376 * 5 4 2 34 34 H 0.96994 * 119.99675 * 25.00105 * 8 6 2 35 35 H 1.08000 * 120.03932 * 359.96119 * 10 9 8 36 36 H 1.08002 * 119.96028 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.46776 * 210.00059 * 13 12 11 38 38 H 1.09003 * 109.47041 * 330.00009 * 13 12 11 39 39 H 0.96990 * 120.00273 * 179.97438 * 17 16 14 40 40 H 1.08002 * 119.96005 * 180.25011 * 22 12 11 41 41 H 1.07998 * 120.03717 * 179.70130 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9301 -1.0584 5 6 3.1923 -1.3136 0.0013 6 6 2.1459 -0.9280 1.0602 7 1 2.5637 -0.3970 1.9156 8 7 1.2703 -2.0358 1.4506 9 6 1.4176 -2.6340 2.7041 10 6 0.5878 -3.6841 3.0760 11 6 0.7364 -4.2738 4.3160 12 6 1.7061 -3.8161 5.1893 13 6 1.8609 -4.4575 6.5441 14 6 2.8408 -5.5985 6.4508 15 1 3.3055 -5.8352 5.5050 16 6 3.1451 -6.3396 7.5729 17 7 2.5804 -6.0504 8.7249 18 14 4.3604 -7.7535 7.4573 19 1 4.8511 -7.8714 6.0607 20 1 5.5069 -7.4962 8.3653 21 1 3.6888 -9.0172 7.8539 22 6 2.5376 -2.7746 4.8200 23 6 2.3944 -2.1805 3.5814 24 1 -0.3634 0.3312 0.9728 25 1 -0.3634 0.6768 -0.7733 26 1 -0.3633 -1.0082 -0.1995 27 1 3.1941 1.3533 -0.1996 28 1 1.6414 2.0075 -0.7733 29 1 1.9599 1.8734 0.9728 30 1 1.4945 -1.7548 -1.3473 31 1 2.5637 -0.4008 -1.9149 32 1 4.0710 -0.6687 0.0007 33 1 3.4443 -2.3741 0.0024 34 1 0.5884 -2.3538 0.8385 35 1 -0.1729 -4.0389 2.3964 36 1 0.0913 -5.0900 4.6060 37 1 2.2299 -3.7189 7.2557 38 1 0.8949 -4.8347 6.8800 39 1 2.7941 -6.5719 9.5143 40 1 3.2965 -2.4223 5.5028 41 1 3.0409 -1.3640 3.2956 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903294148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:20 Heat of formation + Delta-G solvation = 30.287319 kcal Electronic energy + Delta-G solvation = -18794.355679 eV Core-core repulsion = 16059.877459 eV Total energy + Delta-G solvation = -2734.478220 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34305 -38.38921 -34.48918 -32.70941 -30.85375 -30.16396 -29.83101 -27.65240 -26.32376 -24.87698 -22.90455 -22.45649 -21.79909 -20.02625 -18.16089 -17.10839 -16.21596 -15.81173 -14.95493 -14.85898 -14.61842 -14.28202 -13.97648 -13.50846 -13.34253 -12.83809 -12.73433 -12.62901 -12.47178 -12.31274 -12.15231 -11.70946 -11.47808 -11.21056 -11.16686 -10.93656 -10.61261 -10.47683 -10.38678 -10.21160 -9.96760 -9.65315 -9.38069 -8.94303 -8.35293 -8.18929 -6.71429 -5.94969 -3.99402 2.17042 2.40507 3.33531 3.40950 3.46614 3.59607 4.21980 4.40308 4.47685 4.64379 4.67784 4.83013 5.00808 5.28830 5.35161 5.37645 5.44210 5.47924 5.56690 5.58678 5.62354 5.68126 5.76607 5.84669 5.88270 5.96418 6.06997 6.14666 6.19287 6.25127 6.37318 6.54566 6.76459 6.91145 7.34724 7.35222 7.50311 7.65887 7.90528 8.00631 8.01915 8.11385 8.44270 9.06857 9.64014 11.13322 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.038446 B = 0.003735 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.121719 B = 7494.517664 C = 7684.584146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.126 4.126 4 C -0.131 4.131 5 C -0.162 4.162 6 C 0.145 3.855 7 H 0.089 0.911 8 N -0.736 5.736 9 C 0.183 3.817 10 C -0.194 4.194 11 C -0.080 4.080 12 C -0.084 4.084 13 C 0.053 3.947 14 C -0.507 4.507 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.081 4.081 23 C -0.194 4.194 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.393 0.607 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.260 0.740 40 H 0.115 0.885 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 12.823 -18.298 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.100 4.100 3 C -0.183 4.183 4 C -0.168 4.168 5 C -0.202 4.202 6 C 0.038 3.962 7 H 0.107 0.893 8 N -0.367 5.367 9 C 0.084 3.916 10 C -0.216 4.216 11 C -0.099 4.099 12 C -0.086 4.086 13 C 0.016 3.984 14 C -0.545 4.545 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.099 4.099 23 C -0.216 4.216 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.228 0.772 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.476 12.891 -18.099 22.358 hybrid contribution 0.464 -1.018 -0.279 1.153 sum -2.013 11.873 -18.378 21.972 Atomic orbital electron populations 1.21633 0.94090 1.01389 1.01828 1.22252 0.95687 0.95137 0.96888 1.21551 1.00601 0.94076 1.02097 1.23015 0.98389 0.98826 0.96609 1.23466 0.97413 1.02167 0.97111 1.21757 0.90915 0.87886 0.95672 0.89269 1.44089 1.39519 1.37457 1.15618 1.17593 0.95375 0.93249 0.85350 1.20445 1.02750 0.99885 0.98528 1.20821 0.98001 0.98391 0.92650 1.20456 0.94209 0.95025 0.98912 1.18250 0.97485 0.95070 0.87625 1.21182 1.24424 1.13865 0.95044 0.92512 1.25024 0.96440 0.97629 0.95408 1.69972 1.43525 1.40429 0.99652 0.86521 0.81084 0.82241 0.78120 1.19715 1.21018 1.21031 1.20852 0.98235 0.95727 0.95116 1.20556 1.01595 1.03891 0.95606 0.92244 0.92818 0.92768 0.92235 0.92276 0.92119 0.90438 0.91648 0.89811 0.90995 0.77223 0.87527 0.86631 0.95699 0.95704 0.93040 0.86681 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.58 37.16 0.32 -0.81 16 2 C -0.10 -0.86 1.35 -153.70 -0.21 -1.07 16 3 C -0.13 -0.95 9.07 37.16 0.34 -0.61 16 4 C -0.13 -1.12 7.07 -25.92 -0.18 -1.31 16 5 C -0.16 -1.62 7.53 -25.92 -0.20 -1.81 16 6 C 0.15 1.59 3.58 -67.12 -0.24 1.35 16 7 H 0.09 1.05 6.10 -51.93 -0.32 0.73 16 8 N -0.74 -9.32 4.95 -51.38 -0.25 -9.58 16 9 C 0.18 3.00 6.65 -83.79 -0.56 2.44 16 10 C -0.19 -3.35 9.90 -39.38 -0.39 -3.74 16 11 C -0.08 -1.62 9.69 -39.61 -0.38 -2.00 16 12 C -0.08 -1.90 5.07 -104.59 -0.53 -2.43 16 13 C 0.05 1.39 5.10 -29.04 -0.15 1.25 16 14 C -0.51 -14.56 9.09 -34.44 -0.31 -14.87 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.08 -1.64 9.69 -39.61 -0.38 -2.02 16 23 C -0.19 -3.39 9.26 -39.38 -0.36 -3.76 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.45 6.63 -51.93 -0.34 0.11 16 27 H 0.06 0.42 7.35 -51.93 -0.38 0.04 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.08 0.74 7.66 -51.93 -0.40 0.35 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.39 4.43 7.18 -40.82 -0.29 4.14 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.02 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 41 H 0.11 1.67 6.05 -52.49 -0.32 1.35 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -30.23 330.34 -9.55 -39.78 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.65 Total: 2.03 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -3.34 Total: -27.89 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.48 Total: -35.83 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.23 -9.55 -39.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903294148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.066 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds