Wall clock time and date at job start Mon Mar 30 2020 06:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 112.84586 * 2 1 4 4 C 1.53781 * 113.61374 * 228.69169 * 2 1 3 5 5 C 1.53778 * 87.08034 * 220.02048 * 4 2 1 6 6 C 1.53775 * 113.61084 * 131.19627 * 2 1 3 7 7 H 1.09005 * 113.61209 * 254.61123 * 6 2 1 8 8 N 1.46500 * 113.61994 * 25.43131 * 6 2 1 9 9 C 1.39676 * 120.00062 * 204.99676 * 8 6 2 10 10 C 1.38906 * 120.07171 * 179.97438 * 9 8 6 11 11 C 1.38111 * 119.92343 * 179.97438 * 10 9 8 12 12 C 1.38288 * 120.07382 * 0.28047 * 11 10 9 13 13 C 1.50698 * 119.92407 * 179.69843 * 12 11 10 14 14 C 1.50695 * 109.47077 * 90.00107 * 13 12 11 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00403 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99758 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00253 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47046 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46895 * 119.99964 * 18 16 14 21 21 H 1.48502 * 109.47138 * 239.99653 * 18 16 14 22 22 C 1.38286 * 120.14755 * 359.44532 * 12 11 10 23 23 C 1.38112 * 120.07587 * 0.55318 * 22 12 11 24 24 H 1.08994 * 109.47534 * 288.80146 * 1 2 3 25 25 H 1.09002 * 109.47206 * 48.80609 * 1 2 3 26 26 H 1.09005 * 109.47066 * 168.80507 * 1 2 3 27 27 H 1.09000 * 109.46710 * 191.19959 * 3 2 1 28 28 H 1.09000 * 109.46895 * 311.19321 * 3 2 1 29 29 H 1.08996 * 109.47369 * 71.19512 * 3 2 1 30 30 H 1.09000 * 113.61393 * 334.57222 * 4 2 1 31 31 H 1.09002 * 113.61104 * 105.38339 * 4 2 1 32 32 H 1.09002 * 113.61402 * 270.88646 * 5 4 2 33 33 H 1.08999 * 113.61683 * 139.98376 * 5 4 2 34 34 H 0.96994 * 119.99675 * 25.00105 * 8 6 2 35 35 H 1.08000 * 120.03932 * 359.96119 * 10 9 8 36 36 H 1.08002 * 119.96028 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.46776 * 210.00059 * 13 12 11 38 38 H 1.09003 * 109.47041 * 330.00009 * 13 12 11 39 39 H 0.96990 * 120.00273 * 179.97438 * 17 16 14 40 40 H 1.08002 * 119.96005 * 180.25011 * 22 12 11 41 41 H 1.07998 * 120.03717 * 179.70130 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9301 -1.0584 5 6 3.1923 -1.3136 0.0013 6 6 2.1459 -0.9280 1.0602 7 1 2.5637 -0.3970 1.9156 8 7 1.2703 -2.0358 1.4506 9 6 1.4176 -2.6340 2.7041 10 6 0.5878 -3.6841 3.0760 11 6 0.7364 -4.2738 4.3160 12 6 1.7061 -3.8161 5.1893 13 6 1.8609 -4.4575 6.5441 14 6 2.8408 -5.5985 6.4508 15 1 3.3055 -5.8352 5.5050 16 6 3.1451 -6.3396 7.5729 17 7 2.5804 -6.0504 8.7249 18 14 4.3604 -7.7535 7.4573 19 1 4.8511 -7.8714 6.0607 20 1 5.5069 -7.4962 8.3653 21 1 3.6888 -9.0172 7.8539 22 6 2.5376 -2.7746 4.8200 23 6 2.3944 -2.1805 3.5814 24 1 -0.3634 0.3312 0.9728 25 1 -0.3634 0.6768 -0.7733 26 1 -0.3633 -1.0082 -0.1995 27 1 3.1941 1.3533 -0.1996 28 1 1.6414 2.0075 -0.7733 29 1 1.9599 1.8734 0.9728 30 1 1.4945 -1.7548 -1.3473 31 1 2.5637 -0.4008 -1.9149 32 1 4.0710 -0.6687 0.0007 33 1 3.4443 -2.3741 0.0024 34 1 0.5884 -2.3538 0.8385 35 1 -0.1729 -4.0389 2.3964 36 1 0.0913 -5.0900 4.6060 37 1 2.2299 -3.7189 7.2557 38 1 0.8949 -4.8347 6.8800 39 1 2.7941 -6.5719 9.5143 40 1 3.2965 -2.4223 5.5028 41 1 3.0409 -1.3640 3.2956 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903294148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:20 Heat of formation + Delta-G solvation = 14.971463 kcal Electronic energy + Delta-G solvation = -18795.019824 eV Core-core repulsion = 16059.877459 eV Total energy + Delta-G solvation = -2735.142365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23891 -39.76897 -36.02675 -34.61759 -31.90820 -31.62788 -31.22581 -28.47700 -27.84638 -26.00231 -24.64782 -23.48528 -23.05926 -21.56586 -19.04984 -18.50044 -18.28125 -16.88763 -16.61029 -15.83906 -15.79329 -15.48726 -15.26071 -14.59385 -14.48639 -14.30398 -14.21836 -14.00471 -13.68773 -13.20764 -13.19187 -13.08806 -12.94110 -12.56349 -12.44067 -12.34855 -12.31760 -11.76731 -11.57361 -11.51254 -11.33530 -11.12068 -10.87904 -10.58443 -10.42504 -9.68425 -8.29738 -7.94242 -6.30146 0.67321 0.88516 1.39729 1.39780 1.53972 2.41597 2.52687 3.12625 3.14393 3.48417 3.71352 3.90490 4.01673 4.15606 4.21431 4.33032 4.49387 4.58040 4.63766 4.76655 4.77986 4.79911 4.84268 4.93277 5.01322 5.03463 5.09657 5.15984 5.20157 5.22998 5.27161 5.38205 5.40332 5.50382 5.53839 5.56835 5.70806 5.82086 6.06614 6.23485 6.25889 6.61467 6.83417 6.97490 7.38215 8.92276 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.038446 B = 0.003735 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.121719 B = 7494.517664 C = 7684.584146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 C -0.126 4.126 4 C -0.124 4.124 5 C -0.160 4.160 6 C 0.129 3.871 7 H 0.082 0.918 8 N -0.722 5.722 9 C 0.201 3.799 10 C -0.191 4.191 11 C -0.089 4.089 12 C -0.124 4.124 13 C 0.063 3.937 14 C -0.525 4.525 15 H 0.052 0.948 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.090 4.090 23 C -0.194 4.194 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.403 0.597 35 H 0.138 0.862 36 H 0.111 0.889 37 H -0.003 1.003 38 H -0.002 1.002 39 H 0.265 0.735 40 H 0.109 0.891 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 13.464 -21.287 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.184 4.184 4 C -0.161 4.161 5 C -0.199 4.199 6 C 0.022 3.978 7 H 0.100 0.900 8 N -0.352 5.352 9 C 0.099 3.901 10 C -0.214 4.214 11 C -0.108 4.108 12 C -0.125 4.125 13 C 0.026 3.974 14 C -0.563 4.563 15 H 0.070 0.930 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.108 4.108 23 C -0.216 4.216 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.156 0.844 36 H 0.129 0.871 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.073 0.927 40 H 0.127 0.873 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.044 13.558 -21.133 25.192 hybrid contribution 0.288 -1.104 0.545 1.264 sum -1.757 12.454 -20.589 24.127 Atomic orbital electron populations 1.21647 0.93852 1.01839 1.01691 1.22212 0.95843 0.95418 0.95482 1.21578 1.01074 0.93296 1.02414 1.22995 0.97669 0.98783 0.96676 1.23456 0.97934 1.01433 0.97124 1.22027 0.91623 0.87893 0.96274 0.89960 1.44126 1.39667 1.37242 1.14193 1.17667 0.93902 0.92245 0.86291 1.20645 1.03400 0.99659 0.97661 1.20828 0.97531 0.98709 0.93693 1.20143 0.97276 0.97327 0.97788 1.17983 0.95425 0.94167 0.89807 1.21480 1.24998 1.14812 0.95014 0.92990 1.25959 0.98338 1.00460 0.94885 1.70096 1.44937 1.41785 1.00455 0.85387 0.78566 0.78622 0.78414 1.19047 1.20090 1.20090 1.20836 0.97963 0.95610 0.96431 1.20708 1.02221 1.04173 0.94512 0.93348 0.91484 0.92595 0.91637 0.91049 0.92449 0.90332 0.90269 0.88579 0.92590 0.76006 0.84442 0.87107 0.98447 0.98386 0.92652 0.87314 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.58 71.98 0.62 -1.25 16 2 C -0.09 -1.27 1.35 -51.66 -0.07 -1.34 16 3 C -0.13 -1.50 9.07 71.98 0.65 -0.85 16 4 C -0.12 -1.69 7.07 31.12 0.22 -1.47 16 5 C -0.16 -2.74 7.53 31.12 0.23 -2.51 16 6 C 0.13 2.46 3.58 45.52 0.16 2.62 16 7 H 0.08 1.72 6.10 -2.38 -0.01 1.71 16 8 N -0.72 -16.32 4.95 -316.48 -1.57 -17.89 16 9 C 0.20 6.18 6.65 38.21 0.25 6.44 16 10 C -0.19 -6.33 9.90 22.40 0.22 -6.11 16 11 C -0.09 -3.66 9.69 22.25 0.22 -3.44 16 12 C -0.12 -5.80 5.07 -19.84 -0.10 -5.90 16 13 C 0.06 3.57 5.10 29.10 0.15 3.72 16 14 C -0.53 -31.33 9.09 25.60 0.23 -31.09 16 15 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 16 C 0.00 0.07 5.46 84.65 0.46 0.53 16 17 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 18 Si 0.97 45.64 29.54 68.60 2.03 47.66 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 C -0.09 -3.73 9.69 22.25 0.22 -3.51 16 23 C -0.19 -6.58 9.26 22.40 0.21 -6.37 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.76 6.63 -2.38 -0.02 0.74 16 27 H 0.06 0.71 7.35 -2.39 -0.02 0.69 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 1.08 7.96 -2.39 -0.02 1.06 16 31 H 0.08 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.10 1.42 7.66 -2.39 -0.02 1.40 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.40 7.76 7.18 -92.71 -0.67 7.10 16 35 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 36 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 37 H 0.00 -0.17 8.09 -2.39 -0.02 -0.19 16 38 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 39 H 0.26 15.30 8.31 -92.72 -0.77 14.53 16 40 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.13 3.83 6.05 -2.91 -0.02 3.81 16 Total: -1.00 -66.98 330.34 4.75 -62.23 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.33 Total: 16.13 kcal Atomic # 6 Polarization: -54.22 SS G_CDS: 3.68 Total: -50.55 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -1.28 Total: -75.48 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -66.98 4.75 -62.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903294148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.200 kcal (2) G-P(sol) polarization free energy of solvation -66.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds